View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5156-Insertion-1 (Length: 1189)
Name: NF5156-Insertion-1
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5156-Insertion-1 |
 | |
|
| [»] scaffold0543 (2 HSPs) |
| | |
|
| [»] scaffold0492 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 34356227 - 34356631
Alignment:
| Q |
8 |
aaaagtgagtgagagaagtcaatgttgaggttctcaactcctctttgaattgctatataaagaaaattgtagatatccctgcaatcgtagtcgttccaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356227 |
aaaagtgagtgagagaagtcaatgttgaggttctcaactcctctttgaattgctatataaagaaaattgtagatatccctgcaatcgtagtcgttccaac |
34356326 |
T |
|
| Q |
108 |
attgaagatggaatgagaggatgggtagagtgatatctcgcatggccatgagtgagtatacaaaattgcaaaatgtcagtgagtctggaaatggttcgtc |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34356327 |
attgaagatggaaagagaggatgggtagagtgatatctcgcatggccatgagtgagtatacaaaattgcaaaatgtcggtgagtctggaaatggttcgtc |
34356426 |
T |
|
| Q |
208 |
atccaagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356427 |
atccaagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaata |
34356526 |
T |
|
| Q |
308 |
taataaagaagtgaatcaggtagagcacttattttgtcttcccctaaaattgaacaacaagaatcacatcaaaaccaaattttatgtaaattttatcacg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34356527 |
taataaagaagtgaatcaggtagagcacttattttatcttcccctgaaattgaacaacaagaatcacatcaaaaccgaattttatgtaaattttatcacg |
34356626 |
T |
|
| Q |
408 |
gtaat |
412 |
Q |
| |
|
||||| |
|
|
| T |
34356627 |
gtaat |
34356631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 560 - 968
Target Start/End: Original strand, 34356628 - 34357033
Alignment:
| Q |
560 |
taataaaaagtaagaacaaacacttgactaagctacatatcctctaaattaaaattaaaaactaatccacgttaaaggaaattgtagagaattggaataa |
659 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34356628 |
taataaaaagtaagaacaaacacttgactaagctacatatcctctaaattaaaattaaaaactaatccacgttaaaggaaattgtagag--ttggaataa |
34356725 |
T |
|
| Q |
660 |
gaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacgtttaacacatgatgggtggtaaggattggggcatcccctgn |
759 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34356726 |
gaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacgtttaacacatgatgggtggtaaggattgggacatcccctga |
34356825 |
T |
|
| Q |
760 |
nnnnnnnnnnnnnnnnnnncaatgaattttcataatagtaaataccaattgtagtccatacaaacagtttgtatctcgaatatattctgtaacaaatttt |
859 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34356826 |
aaaacacaaaaagaaaaaacaatgaattttcaaaatagtaaataccaattgtagtccatacaaacagtttgtatctcgaatatattctgtgacaaatttt |
34356925 |
T |
|
| Q |
860 |
aaacataaaattgatgactaaattaatatatgctaatcctaattttataaatttaaggtacgatttatagactttctgggtaggtaaattagggttttaa |
959 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356926 |
aaacataaaattgatgact-aattaatatatgccaatcctaattttataaatttaaggtacgatttatagactttctgggtaggtaaattagggttttaa |
34357024 |
T |
|
| Q |
960 |
agagtcttt |
968 |
Q |
| |
|
||||||||| |
|
|
| T |
34357025 |
agagtcttt |
34357033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 35047513 - 35047128
Alignment:
| Q |
19 |
agagaagtcaatgttgaggttctcaactcctctttgaattgctatataaagaaaattgtagatatcc------------ctgcaatcgtagtcgttccaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
35047513 |
agagaagtcaatgttgaggttctcaactcctctttgaattgctatattaacaaatttgtagatatcctcggagatatccctgcaatcgtagtagttccaa |
35047414 |
T |
|
| Q |
107 |
cattgaagatggaatgagaggatgggtagagtgatatctcgcatggccatgagtgagtatacaaaattgcaaaatgtcagtgagtctggaaatggttcgt |
206 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35047413 |
cattcaagatggaaagagaggatgggtagagtgatatctcgcatggccatgagtgaatatccaaaattgcaaaaggtcagtgagtctggaaatggttcgt |
35047314 |
T |
|
| Q |
207 |
catccaagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
35047313 |
catccaagttgaggaagagttgtgagagccaaagtggtctcgacctctttgagaggatacttgtggtggcggcatctttaatcgaaataaaggaaagaat |
35047214 |
T |
|
| Q |
307 |
ataataaagaagtgaatcaggtagagcacttattttgtcttcccctaaaattgaacaacaagaatcacatcaaaaccaaattttat |
392 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35047213 |
ataataaagaagtgaatcaggtagcgcacttattttgtcttctcctggaattgaacaaggagaatcacatcaaaaccaaattttat |
35047128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 638 - 757
Target Start/End: Complemental strand, 35046982 - 35046862
Alignment:
| Q |
638 |
aaattgtagagaattggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacg-tttaacacatgatgggtg |
736 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
35046982 |
aaattgtagagagttggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcccgttttaacacatgatgggtg |
35046883 |
T |
|
| Q |
737 |
gtaaggattggggcatcccct |
757 |
Q |
| |
|
||||||||| | ||||||||| |
|
|
| T |
35046882 |
gtaaggattagtgcatcccct |
35046862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 3832 - 3981
Alignment:
| Q |
212 |
aagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataat |
311 |
Q |
| |
|
|||||||| | |||||||||||| | |||||| ||||||| |||||||||| |||| | ||| | ||||| || | || ||| |||||||| | || |
|
|
| T |
3832 |
aagttgagtatgagttgtgagaggaagagtggtttccacctttttgagaggaccgttgttgcggcagtgtctttcattggaagaaaagaaagaatgtgat |
3931 |
T |
|
| Q |
312 |
aaagaagtgaatcaggtagagcacttattttgtcttcccctaaaattgaa |
361 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| ||| ||||||| |
|
|
| T |
3932 |
aaagaagtgaatccggtagagcactgattctgtcttctcctggaattgaa |
3981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 321
Target Start/End: Original strand, 4123 - 4221
Alignment:
| Q |
223 |
gagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataataaagaagtga |
321 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||| ||||| |||||| ||| || ||||| ||| || ||||||||||||| |||||||||||| |
|
|
| T |
4123 |
gagttgtgagagccatagtggcttccacctttttgataggattgttgtggcggcagcgtctttggtcggaagaaaggaaagaatacgataaagaagtga |
4221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 5378 - 5527
Alignment:
| Q |
212 |
aagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataat |
311 |
Q |
| |
|
|||||||| | |||||||||||| | |||||| ||||||| |||||||||| |||| | ||| | ||||| || | || ||| |||||||| | || |
|
|
| T |
5378 |
aagttgagtatgagttgtgagaggaagagtggtttccacctttttgagaggaccgttgttgcggcagtgtctttcattggaagaaaagaaagaatgtgat |
5477 |
T |
|
| Q |
312 |
aaagaagtgaatcaggtagagcacttattttgtcttcccctaaaattgaa |
361 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| ||| ||||||| |
|
|
| T |
5478 |
aaagaagtgaatccggtagagcactgattctgtcttctcctggaattgaa |
5527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 321
Target Start/End: Original strand, 5669 - 5767
Alignment:
| Q |
223 |
gagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaacaaaggaaagaatataataaagaagtga |
321 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||| ||||| |||||| ||| || ||||| ||| || ||||||||||||| |||||||||||| |
|
|
| T |
5669 |
gagttgtgagagccatagtggcttccacctttttgataggattgttgtggcggcagcgtctttggtcggaagaaaggaaagaatacgataaagaagtga |
5767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 348
Target Start/End: Original strand, 49974083 - 49974236
Alignment:
| Q |
195 |
gaaatggttcgtcatccaagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtggtggctgcatctttaatcgaaac |
294 |
Q |
| |
|
|||| |||| |||||| ||| ||||| ||||||||||||||| |||||| ||||| |||| ||||| || ||||||| ||| |||||| | | || |
|
|
| T |
49974083 |
gaaagggttggtcatcgaagcggaggatgagttgtgagagccagagtggtttccacttcttcgagagaatgcttgtggcggcactgtctttagtagtaag |
49974182 |
T |
|
| Q |
295 |
aaaggaaagaatataataaagaagtgaatcaggtagagcacttattttgtcttc |
348 |
Q |
| |
|
||||||||||| || |||||||||||| || || | |||||| ||| ||||||| |
|
|
| T |
49974183 |
aaaggaaagaacatgataaagaagtgagtccggcaaagcactgattctgtcttc |
49974236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 681 - 732
Target Start/End: Original strand, 49761569 - 49761620
Alignment:
| Q |
681 |
ttcaagttttccttggcttgaaccaagactttctcacgtttaacacatgatg |
732 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49761569 |
ttcaagtttaccttggcttgaaaggagactttctcacgtttaacacatgatg |
49761620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 49760875 - 49760972
Alignment:
| Q |
116 |
tggaatgagaggatgggtagagtgatatctcgcatggccatgagtgagtatacaaaattgcaaaatgtcagtgagtctggaaatggttcgtcatccaa |
213 |
Q |
| |
|
|||||||||| ||||| || ||||||||| |||||||| | | |||||| |||||||||||||| || | ||||| |||||||||||||||||| |
|
|
| T |
49760875 |
tggaatgagaagatggataaggtgatatcttgcatggccgtcattgagtaaacaaaattgcaaaaggttataaagtctaaaaatggttcgtcatccaa |
49760972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University