View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5156-Insertion-2 (Length: 510)
Name: NF5156-Insertion-2
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5156-Insertion-2 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Complemental strand, 675179 - 674679
Alignment:
| Q |
8 |
ttatattgtctcaatattttaatttt-gcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
675179 |
ttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtcgtgtt |
675080 |
T |
|
| Q |
107 |
tgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaaggattat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
675079 |
tgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaaggattat |
674980 |
T |
|
| Q |
207 |
agttttagggccgtggaattttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtgcttaatagacaggctaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
674979 |
agttttagggccgtggaattttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggttcttaatagacaggctaaa |
674880 |
T |
|
| Q |
307 |
cttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttcactgtgttattctagtcta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
674879 |
cttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttcactgtgttattctagtcta |
674780 |
T |
|
| Q |
407 |
atgtgttagtacatcaattgtaaaaaacttgtagttccagcacactgcaatgacaatttgaattcagacatatatacttgaatttttcggtacattctgt |
506 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
674779 |
atgtgttagtacatcaattgtaacaaacttgtagttccagcacactgcaatgacaatttgaattcagacatatatacttgaatttttcggtacattctgt |
674680 |
T |
|
| Q |
507 |
g |
507 |
Q |
| |
|
| |
|
|
| T |
674679 |
g |
674679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Complemental strand, 749775 - 749275
Alignment:
| Q |
8 |
ttatattgtctcaatattttaatttt-gcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
749775 |
ttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtcgtgtt |
749676 |
T |
|
| Q |
107 |
tgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaaggattat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
749675 |
tgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaaggattat |
749576 |
T |
|
| Q |
207 |
agttttagggccgtggaattttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtgcttaatagacaggctaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
749575 |
agttttagggccgtggaattttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggttcttaatagacaggctaaa |
749476 |
T |
|
| Q |
307 |
cttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttcactgtgttattctagtcta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
749475 |
cttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttcactgtgttattctagtcta |
749376 |
T |
|
| Q |
407 |
atgtgttagtacatcaattgtaaaaaacttgtagttccagcacactgcaatgacaatttgaattcagacatatatacttgaatttttcggtacattctgt |
506 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
749375 |
atgtgttagtacatcaattgtaacaaacttgtagttccagcacactgcaatgacaatttgaattcagacatatatacttgaatttttcggtacattctgt |
749276 |
T |
|
| Q |
507 |
g |
507 |
Q |
| |
|
| |
|
|
| T |
749275 |
g |
749275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 2634190 - 2634581
Alignment:
| Q |
8 |
ttatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgttt |
107 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||| |
|
|
| T |
2634190 |
ttataatgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataacatcatagttcaaatgtctctttttcaggctggttgtgttt |
2634289 |
T |
|
| Q |
108 |
gttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaaggattata |
207 |
Q |
| |
|
|||| ||||||||||||||| |||| ||| |||||| |||||||| ||| || || |||||||||||| ||||||||||||| || ||||||| | || |
|
|
| T |
2634290 |
gttcgtttcaatagaagggttattctctatctggctgaattgcttcggt--atcttgtggtctggagcggtgctgaagatggccgtgaaaaagggtagta |
2634387 |
T |
|
| Q |
208 |
gttttagggccgtggaat-tttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtgcttaatagacaggctaaa |
306 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||| ||||||||||||||| || || |||||| |||||||| |
|
|
| T |
2634388 |
gttttagggttgtggaatccccaagttcattttgattatttattatggtgtaaaccttgatgaggtgaaaaaactatatgttctaaatagataggctaaa |
2634487 |
T |
|
| Q |
307 |
cttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttcactgtgttattct |
400 |
Q |
| |
|
||| |||| || | |||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
2634488 |
cttttctcgggctgtattataatatgttgtttgtaagaaaatacaatcttcaaagtgtaatatgtttgacttgcatgtttcaccgtgttattct |
2634581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 61 - 320
Target Start/End: Complemental strand, 9564474 - 9564214
Alignment:
| Q |
61 |
ttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcat |
160 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
9564474 |
ttataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcattagaagggttattcactagctggctgaattgcttaggttcat |
9564375 |
T |
|
| Q |
161 |
tttctggtctggagcgttgctgaagatggctgttaaaaaggattatagttttagggccgtggaa-ttttaagttcattttgattatttattatgtagtaa |
259 |
Q |
| |
|
||| |||||||||| |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
9564374 |
tttgtggtctggagtattgctgaagatggcggtgaaaaaggatcgtagttttagggtcgtggaatttttaagtttattttgattatttactatgtagtaa |
9564275 |
T |
|
| Q |
260 |
aactagatggggtgaaaaaactataggtgcttaatagacaggctaaacttgtctctggttt |
320 |
Q |
| |
|
||||||||| ||||||||||||||| || || ||||||| |||||||||||||||||||| |
|
|
| T |
9564274 |
aactagatgaggtgaaaaaactatatgttctgtatagacaagctaaacttgtctctggttt |
9564214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 2495766 - 2495948
Alignment:
| Q |
8 |
ttatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgttt |
107 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2495766 |
ttataatgtctcaatatttttattttaattgcacctgaagcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttgtgttt |
2495865 |
T |
|
| Q |
108 |
gttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggc |
190 |
Q |
| |
|
|||| ||||||||||||||| | || || ||||||| |||| |||||||| |||| ||||||||||| | ||||||||||| |
|
|
| T |
2495866 |
gttcctttcaatagaagggttactcgctggctggctgaattccttaggtttgttttgtggtctggagcttcactgaagatggc |
2495948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 74 - 284
Target Start/End: Original strand, 2485414 - 2485625
Alignment:
| Q |
74 |
gttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctgga |
173 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||| ||||| | ||||||| |||| | ||||||| | ||||||| ||||||||| ||||||||| |
|
|
| T |
2485414 |
gttgaaatgtcactttttcaggttgattgtgtttgttcgtttcagttgaagggttattcgcaggctggctgagttgcttatgttcattttgtggtctgga |
2485513 |
T |
|
| Q |
174 |
gcgttgctgaagatggctgttaaaaaggattatagttttagggccgtggaatt-ttaagttcattttgattatttattatgtagtaaaactagatggggt |
272 |
Q |
| |
|
|| ||||||||||||| || |||| || | |||||| ||| | || ||||| |||||||| ||| ||||||| || || ||| |||||||||| | | |
|
|
| T |
2485514 |
gccttgctgaagatggtggtgaaaaggggtaatagttctagtgttgtcgaattcctaagttcagtttaattatttcttgtggagtcaaactagatgagat |
2485613 |
T |
|
| Q |
273 |
gaaaaaactata |
284 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2485614 |
gaaaaaactata |
2485625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 2504161 - 2504487
Alignment:
| Q |
8 |
ttatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagac-ttataacttcatagttgaaatgtctctttttcaggttggtcgtgtt |
106 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |||| |||||||| || ||||||| | ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2504161 |
ttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttataacatattagttgaaatgtctc--tttcaggttggctgtgtt |
2504258 |
T |
|
| Q |
107 |
tgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaaggattat |
206 |
Q |
| |
|
|||| ||||||||||||||| |||||| | | | ||||||| ||||| |||| |||| |||||| ||||||||||||| | | |||||| | | |
|
|
| T |
2504259 |
tgtttgtttcaatagaagggttattcacaatcag----aattgctcgggttctttttgtggtgtggagctttgctgaagatgg--ggtgaaaagggtagt |
2504352 |
T |
|
| Q |
207 |
agttttagggccgtggaa--ttttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtgcttaatagacaggcta |
304 |
Q |
| |
|
|||| ||||| | || | |||||||| ||||||||||| || || ||| |||||||| | ||||||||| ||| | || | |||||| ||| || |
|
|
| T |
2504353 |
agttatagggtaatttaacttcttaagttctgtttgattatttcttctgaagtcaaactagaggaggtgaaaaacctacatgttttaaatagataggata |
2504452 |
T |
|
| Q |
305 |
aacttgtctctggttttattattatatgttgtttg |
339 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||| |
|
|
| T |
2504453 |
aacttgtctctgactttattattgtctgttgtttg |
2504487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 2447037 - 2447109
Alignment:
| Q |
37 |
tgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgtt |
110 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
2447037 |
tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtgtttgtt |
2447109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 2447116 - 2447172
Alignment:
| Q |
145 |
aattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaagg |
201 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
2447116 |
aattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagg |
2447172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 7331940 - 7331830
Alignment:
| Q |
14 |
tgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagact-tataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttca |
112 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||| || ||||| | |||||||| ||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
7331940 |
tgtctcaatattataattttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttg |
7331841 |
T |
|
| Q |
113 |
tttcaatagaa |
123 |
Q |
| |
|
||||||||||| |
|
|
| T |
7331840 |
tttcaatagaa |
7331830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 2641633 - 2641519
Alignment:
| Q |
71 |
atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtct |
170 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| | | | |||||||| ||||| |||| |||||| |
|
|
| T |
2641633 |
atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattcaaaatcag----aattgcttgggttctttttgtggtct |
2641538 |
T |
|
| Q |
171 |
ggagcgttgctgaagatgg |
189 |
Q |
| |
|
||||| ||||| ||||||| |
|
|
| T |
2641537 |
ggagctttgctaaagatgg |
2641519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 2649126 - 2649064
Alignment:
| Q |
71 |
atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattca |
133 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| |
|
|
| T |
2649126 |
atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattca |
2649064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 400
Target Start/End: Original strand, 2496063 - 2496092
Alignment:
| Q |
371 |
tttgacttgtatgtttcactgtgttattct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2496063 |
tttgacttgtatgtttcactgtgttattct |
2496092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 388
Target Start/End: Original strand, 2436 - 2810
Alignment:
| Q |
14 |
tgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcat |
113 |
Q |
| |
|
||||||||||||||||| || |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
2436 |
tgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataacgtcatagttgaaatgtctctttttcaggttggttgtgtttgttcgt |
2535 |
T |
|
| Q |
114 |
ttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaaggattatagtttta |
213 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| || ||||||| | ||||||||| |
|
|
| T |
2536 |
ttcaatagaagggttattctctagctggctgaattgcttaggttcatttgtgggtctggagcgttgctgaatatggcggtgaaaaagggtaatagtttta |
2635 |
T |
|
| Q |
214 |
gggccgtggaatt-ttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtgcttaatagacaggctaaacttgtc |
312 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||| || || |||||| |||||||| ||||| |
|
|
| T |
2636 |
gggttgtggaattcctaagttcattttgattatttattatggtgtaaaacttgatgaggtgaaaaaact---tgttctgaatagataggctaaatttgtc |
2732 |
T |
|
| Q |
313 |
tctggttttattattatatgttgtttg--gaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttca |
388 |
Q |
| |
|
||||| |||||||||| |||||||||| | | |||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
2733 |
tctggctttattattaaatgttgtttgtaggaaaaaatacaatcttcaaagtctaatatgtttgattttcatgtttca |
2810 |
T |
|
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