View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5156-Insertion-3 (Length: 461)
Name: NF5156-Insertion-3
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5156-Insertion-3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 26 - 461
Target Start/End: Original strand, 886937 - 887366
Alignment:
| Q |
26 |
cactattttgcaggacaagcggatctgctttacaatgaaattcatactcctattaagggtcttaacgttatgtttgatagtggaaccaccctttcatacc |
125 |
Q |
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| T |
886937 |
cactattatgcaggacaagcggatctgctttacaatggaattcatactcctattagggttcttagccttttgtttgatagtggaaccaccctttcatacc |
887036 |
T |
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| Q |
126 |
tcaattctaaggactatgaagttcttctcaaacttgtgagcaaaaatcatagaaattaaataactataacgttttcagttcatagtggttgttgatcaaa |
225 |
Q |
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| T |
887037 |
tcaattctaaagactataaagttcttctcgatcttgtgagcaaaaatcatagaaattaaataactataacgttttcagttcatagtggttgttgatcaaa |
887136 |
T |
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| Q |
226 |
tattaattgatattttagataaacacagaattgaataataaaggaacgtttaaacaagctgaggaagacgatctaatttgttggacgggtaagatatttc |
325 |
Q |
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| T |
887137 |
tattaattgatattttagataaacacagaattgaataataaaggaacgtttaaaaaagctgaggaagacgatctaatttgttggacgggtaagatatttc |
887236 |
T |
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| Q |
326 |
agtctatagaccaagtgagcaaggattatttgaagcctataatattgagcatcacaaacaacaaaaacaatgtgaagtttgaattactagttaaacatta |
425 |
Q |
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| T |
887237 |
agtctatagaccaagtgagcaaagattatttgaagcctataatattgagcatcacaaac------aacaatgtgaagtttgaattacaagttgaacatta |
887330 |
T |
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| Q |
426 |
tataaaactgtcggtgagcacctttttattaagcta |
461 |
Q |
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| T |
887331 |
tataaccctctcggtgagcacctttttgtgaagcta |
887366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 31875246 - 31875184
Alignment:
| Q |
188 |
actataacgttttcagttcatagtggttgttgatcaaatattaattgatattttagataaaca |
250 |
Q |
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| T |
31875246 |
actataacattttcagttcatagtggttgttgatcaaatattaattaatattttagataaaca |
31875184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 372
Target Start/End: Complemental strand, 31881715 - 31881544
Alignment:
| Q |
207 |
atagtggttgttgatcaaatattaattgatattttagataaacacagaattgaataataaag---gaacgtttaaacaagctgaggaagacgatctaatt |
303 |
Q |
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| T |
31881715 |
atagtggttgttgatcaaatattaattaatatttcagatacacattgaattgaattttaaaggaagaaagtttacacctattaaggaagacggtctaaat |
31881616 |
T |
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| Q |
304 |
tgttggacgggt---aagatatttcagtctatagaccaagtgagcaaggattatttgaagcctataatattg |
372 |
Q |
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| T |
31881615 |
tgttggaagggtgacaaaccatttaagtctatagacgaagtgagcaaagggtatttgaagcctatgatattg |
31881544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 31875100 - 31875053
Alignment:
| Q |
327 |
gtctatagaccaagtgagcaaggattatttgaagcctataatattgag |
374 |
Q |
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| T |
31875100 |
gtctatagacgaagtgagcaaagactatttgaagcctataataatgag |
31875053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 29146696 - 29146628
Alignment:
| Q |
226 |
tattaattgatattttagataaacacagaattgaataataaaggaacgtttaaacaagctgaggaagac |
294 |
Q |
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| T |
29146696 |
tattaattgatatttcagataaacaaagaattgaattcgaaagaaacgtttacacaagctaaggaagac |
29146628 |
T |
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