View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5156-Insertion-5 (Length: 794)

Name: NF5156-Insertion-5
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5156-Insertion-5
NF5156-Insertion-5
[»] chr1 (2 HSPs)
chr1 (87-794)||(36907085-36907793)
chr1 (7-87)||(36906980-36907060)


Alignment Details
Target: chr1 (Bit Score: 645; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 87 - 794
Target Start/End: Original strand, 36907085 - 36907793
Alignment:
Q  87 atatatagttcaactactaatgtggtgagatgtgttcagaatttgtgtgacatgtaattgttttcaagtatatttatacaagaagacaatgtattattgt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36907085 atatatagttcaactactaatgtggtgagatgtgttcagaatttgtgtgacatgtaattgttttcaagtatatttatacaagaagacaatgtattattgt 36907184  T
Q  187 taaagctgcaattgaaactgtatgtttagtagaatcaaaacagaaatatttgatttagttcacactttacacttctgagcatctttatttttagcactac 286  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36907185 taaagctgcaattgaaactgtatgtttagtagaatcaaaacataaatatttgatttagttcacactttacacttctgagcatctttatttttagcactac 36907284  T
Q  287 agatcagaattaataccaagaataaactgttcaaaaaagcaatggatacgatggcacattatcaatttatcatgtcttttgttgaggatcacttctttcc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36907285 agatcagaattaataccaagaataaactgttcaaaaaagcaatggatacgatggcacattatcaatttatcatgtcttttgttgaggatcacttctttcc 36907384  T
Q  387 taactcttaccccaagtattatattatgataaggtagaattcaatctaatcagaagcttagtgagtaagattatcctgtgacttcaaggataaggattaa 486  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36907385 taactcttaccccaagtattatattatgataaggtagaatttaatctaatcagaagcttagtgagtaagattatcctgtgacttcaaggataaggattta 36907484  T
Q  487 tggtgaatcagaatctatttatgaaaggaaaatttgatattctgttttcatcttgtctttttggaataatttagaattgctttactgcttttgataagtt 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36907485 tggtgaatcagaatctatttatgaaaggaaaatttgatattctgttttcatcttgtctttttggaataatttagaattgctttactgcttttgataagtt 36907584  T
Q  587 tgtcttatgctgtcggttgcaagaaccttaggattcagaatggtgtattgatgatgacaattgcaccctttatttattgacttcaagtcagagaaatgct 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  36907585 tgtcttatgctgtcggttgcaagaaccttaggattcagaatggtgaattgatgatgacaattgcaacctttatttattgatttcaagtcagagaaatgct 36907684  T
Q  687 atgaacagtgtcttaactcttacatatactacagaggtgaattccaatactttcatgtttctggattggaaggctttgaaaacttt-gagcctcgtaaac 785  Q
    ||||||| ||| |||||||||| ||  ||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||    
T  36907685 atgaacactgttttaactcttatatgcactacagaggtgaattcaaatactttcatgtttccggattggtaggctttgaaaactttggagcctcgtaaac 36907784  T
Q  786 attttttgt 794  Q
    |||||||||    
T  36907785 attttttgt 36907793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 36906980 - 36907060
Alignment:
Q  7 atcatgttgggtaaggcaggcaagtctctactttaaatccactattatctagctcctctccatcggagacttgagactgga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36906980 atcatgttgggtaaggcaggcaagtctctactttaaatccactattatctagctcctctccatcggagacttgagactgga 36907060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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