View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5156-Insertion-7 (Length: 507)
Name: NF5156-Insertion-7
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5156-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 229 - 507
Target Start/End: Original strand, 40572443 - 40572721
Alignment:
| Q |
229 |
tggagggatcaattattacatactacagtacgatgccaaaaacgtcccatgcttccttcgtactgtaataatttcacctatctatagaaatataaccaga |
328 |
Q |
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| T |
40572443 |
tggagggatcaattattacatactacagtacgatgccaaaaacgtcccatgctcccttcgtactgtaattatttcacctatctatagaaatataactaga |
40572542 |
T |
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| Q |
329 |
aaacttgctctcatcagactccaagaggcagagctacttcaaagcggtactactcatctccaaagccagattgttgtcgttgtcaacaaataatagcaca |
428 |
Q |
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| T |
40572543 |
aaacttgctctcatcagactccaagaggcagagctacttcaaagcggtactactcatctccaaagcgagattgttgtagttgtcaacaaataatagcaca |
40572642 |
T |
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| Q |
429 |
gtagccatttgtcattacatggcgtcaccaaatgggatggtgagagaaagagaaacgatataagggtaagggatttggg |
507 |
Q |
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| T |
40572643 |
gtagccatttgtcattacatggcgtcaccaaatgggatggtgaaagaaagagaaacgatataagggtaagggatttggg |
40572721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 40572253 - 40572459
Alignment:
| Q |
7 |
atgggaaagacaaaatatggatattggagaattggcaaatggaaaaggggaacaaccaaaaagaaaccgccgtacatgaattcggtttataagtaaagaa |
106 |
Q |
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| T |
40572253 |
atgggaaagacaaaatatggatattggagaattggcaaatggaaaaggggaacaaccaaaaagaaaccaccgtacatgaattcggtttataagtaaaaaa |
40572352 |
T |
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| Q |
107 |
aatgaatgattggcaagaaaatcttgtgaggtttgctgatggatatcttcttgaatagcagctttagtttttgagtaatcatacaaaatttggagggatc |
206 |
Q |
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| T |
40572353 |
aatgaatgattggcaagaaaatcttgtgaggtttgctgatggatatcttcttgaatagcagctttagtttttgagtaatcatacaaaatttggagggatc |
40572452 |
T |
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| Q |
207 |
aattatt |
213 |
Q |
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| T |
40572453 |
aattatt |
40572459 |
T |
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