View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5156-Insertion-8 (Length: 505)
Name: NF5156-Insertion-8
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5156-Insertion-8 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Complemental strand, 10237628 - 10237129
Alignment:
| Q |
8 |
tccttatccttatgatcacaatgattatcatcaattcaatcatccttaccctaaccctaattggtacaacatgccacaaaatactcatcaattcaatcat |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10237628 |
tccttatccttatgatcacaatggttatcatcaattcaatcatccttaccctaaccctaattggtacaacatgccacaaaatactcatcaattcaatcat |
10237529 |
T |
|
| Q |
108 |
cctaaccctaattggcacaacatgccacaaaatgcttttccctatgggaatcatcatggttttgagcatcaacatggtactagaaacatgtttgaagata |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10237528 |
cctaaccctaattggcacaacatgccacaaaatgcttttccctatgggaatcatcatggttttgaacatcaacatggtactagaaacatgtttgaagata |
10237429 |
T |
|
| Q |
208 |
gaagcatcccaagtggatcatttgattctcatggtccaatgcgttcaaacaaccatcatgatgatccagggagttcttcacagccatatattccgccaga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10237428 |
gaagcatcccaagtggatcatttgattctcacggtccaatgcgttcaaacaaccatcatgatgatccagggagttcttcacagccatatattccgccaga |
10237329 |
T |
|
| Q |
308 |
aatgaataatcaaacagacgatcaacctcaacctgctaaaccgtcatctttgctgaagaaaatagctgtgaagttatgctttaaatcctaagtaatttgg |
407 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
10237328 |
aaccaataatcaaacagacgatcaacctcaacctgctaaaccgtcatctttgctgaagaaaatggttgtgaagttatgctttaaatcctaagtaattagg |
10237229 |
T |
|
| Q |
408 |
tatttttgcatatttatgacttataaattgtgagtttgtttttccaattactcttaacatgg--gtattatatattgatgagacctaatgttcggtttta |
505 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10237228 |
tatttttgcatatttatgacttagaaattgtgagtttgtttttctaattactcttaacatgggtgtattatatattgatgagacctaatgttcagtttta |
10237129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 10246922 - 10246980
Alignment:
| Q |
94 |
atcaattcaatcatcctaaccctaattggcacaacatgccacaaaatgcttttccctat |
152 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||| ||| | |||||||| |
|
|
| T |
10246922 |
atcaattcaatcatccaaaccctaattggaacaacatgccacaatatggtcttccctat |
10246980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 10247149 - 10247251
Alignment:
| Q |
336 |
caacctgctaaaccgtcatctttgctgaagaaaatagctgtgaagttatgctttaaatcctaagtaatttggtatttttgcatatttatgacttataaat |
435 |
Q |
| |
|
||||||||| ||| || ||||| |||||||||| |||| |||||||||||| |||||||||||||| ||| | |||||||||| | |||||||||| |
|
|
| T |
10247149 |
caacctgctcaacgatcttcttttatgaagaaaattgctgagaagttatgcttagcatcctaagtaattttgtactattgcatatttttaacttataaat |
10247248 |
T |
|
| Q |
436 |
tgt |
438 |
Q |
| |
|
||| |
|
|
| T |
10247249 |
tgt |
10247251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 31282014 - 31282073
Alignment:
| Q |
104 |
tcatcctaaccctaattggcacaacatgccacaaaatgcttttccctatgggaatcatca |
163 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
31282014 |
tcatcccaaccctagttggtacaacatgccacaaaatgctcttcactatggaaatcatca |
31282073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University