View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5156_high_1 (Length: 637)
Name: NF5156_high_1
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5156_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Original strand, 44315627 - 44316018
Alignment:
| Q |
19 |
tagtgcgcgtatgaatgaccatttacaaatatgatccgagttaacaagccgaaacgagttgtgttcaggctaagatcactctagagttgagtttgtcatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44315627 |
tagtgcgcgtatgaatgaccatttacaaatatgatccgagttaacaagccgaaacgagttgtgttcaggctaagatcactctagagttgagtttgtcatc |
44315726 |
T |
|
| Q |
119 |
agtagagtcatagaccatcaagagtgttcaaacaaccattgaatagtgtccataactcgtgcatttggtgattcaatgcctaaatgttttagcatcctcc |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
44315727 |
agtagagtcatagaccatcaatagtgttcaaacaaccattgaatagtgtccataactcgtgcatttggtgattcaaagtctaaatgttttagcatcctcc |
44315826 |
T |
|
| Q |
219 |
aagagcaagagtcaatctcaatataacaaaactattgttctacttaactgggctaagcattatagtgtcactgtactgatagcatttctctttactactc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44315827 |
aagagcaagagtcaatctcaatataacaaaactatttttctacttaattgggctaagcattatagtgtcactgtactgatagcatttctctttactactc |
44315926 |
T |
|
| Q |
319 |
atttatgagcatagcaacgctacggagaaagnnnnnnnntctaatccattttcctctcaaagcatgactcgaaatacccacattacttcttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44315927 |
atttatgagcatagcaacgctacggagaaagaaaaaaaatctaattcattgtcctctcaaagcaagactcgaaatacccacattacttcttt |
44316018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 413 - 632
Target Start/End: Original strand, 44316068 - 44316287
Alignment:
| Q |
413 |
ttaattcctctgaaatcaggaattcacaagagaaaagagtaacaaatcatagtcactaatttgaaaattggtgtttgacatttaaacaacaacttcataa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44316068 |
ttaattcctctgaaatcaggaattcacaagagaaaagagtaacaaatcatagtcactaatttgaaaattggtgtttgacatttaaacaacaacttcataa |
44316167 |
T |
|
| Q |
513 |
tttgcagcacataccttccacatgctgagtgactgtccttgtacaatgcaattgcgtcaatttagtctatgttgatgtccgtaatcacttcttcatagat |
612 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44316168 |
tttgcatcacataccttccacatgctgagtgactgtccttgtacaatgcaattgcgtcaatttagtctatgttgatgtccgtaatcacttcttcatagat |
44316267 |
T |
|
| Q |
613 |
cttgctggctggagaataat |
632 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44316268 |
cttgctggctggagaataat |
44316287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University