View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5156_low_2 (Length: 625)

Name: NF5156_low_2
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5156_low_2
NF5156_low_2
[»] chr4 (17 HSPs)
chr4 (217-606)||(54230522-54230910)
chr4 (426-577)||(56080600-56080753)
chr4 (33-192)||(54230339-54230503)
chr4 (436-577)||(2623299-2623442)
chr4 (432-577)||(39499258-39499405)
chr4 (432-577)||(39502597-39502744)
chr4 (464-577)||(24072428-24072543)
chr4 (426-577)||(29052013-29052167)
chr4 (436-570)||(26695836-26695972)
chr4 (426-577)||(9034013-9034167)
chr4 (427-577)||(40591113-40591265)
chr4 (442-576)||(127994-128130)
chr4 (464-577)||(45620382-45620496)
chr4 (474-576)||(37995500-37995604)
chr4 (476-577)||(44506168-44506271)
chr4 (436-577)||(51790163-51790310)
chr4 (44-76)||(39449473-39449505)
[»] chr1 (12 HSPs)
chr1 (425-576)||(5555195-5555348)
chr1 (426-570)||(32550405-32550551)
chr1 (426-577)||(45360173-45360326)
chr1 (475-577)||(40125463-40125567)
chr1 (426-577)||(14236399-14236544)
chr1 (448-577)||(43069065-43069196)
chr1 (440-575)||(4643601-4643738)
chr1 (450-577)||(19565191-19565320)
chr1 (464-577)||(21620079-21620195)
chr1 (497-577)||(3656589-3656669)
chr1 (478-570)||(6694052-6694147)
chr1 (443-570)||(3027742-3027872)
[»] chr8 (11 HSPs)
chr8 (426-577)||(38567570-38567723)
chr8 (426-575)||(9686366-9686517)
chr8 (426-577)||(2734850-2735003)
chr8 (436-570)||(1197614-1197750)
chr8 (464-577)||(35563785-35563900)
chr8 (426-570)||(18916207-18916353)
chr8 (426-575)||(38526485-38526636)
chr8 (426-570)||(11661329-11661475)
chr8 (425-577)||(41486469-41486623)
chr8 (426-517)||(24697547-24697640)
chr8 (426-496)||(1996318-1996388)
[»] chr5 (10 HSPs)
chr5 (426-577)||(22213267-22213420)
chr5 (426-577)||(25897974-25898127)
chr5 (426-570)||(36275536-36275682)
chr5 (448-577)||(30493934-30494065)
chr5 (448-577)||(30534277-30534408)
chr5 (426-577)||(26945663-26945816)
chr5 (426-576)||(26674058-26674210)
chr5 (426-575)||(11740535-11740686)
chr5 (480-576)||(42394081-42394179)
chr5 (497-577)||(13946435-13946515)
[»] chr3 (17 HSPs)
chr3 (426-577)||(8082398-8082551)
chr3 (426-577)||(30801059-30801212)
chr3 (426-576)||(28246921-28247073)
chr3 (426-577)||(45572658-45572811)
chr3 (436-577)||(11685798-11685941)
chr3 (426-575)||(18996574-18996725)
chr3 (426-575)||(18999113-18999264)
chr3 (426-577)||(37609150-37609303)
chr3 (426-577)||(41957977-41958130)
chr3 (426-577)||(24373070-24373222)
chr3 (464-577)||(53151593-53151708)
chr3 (474-570)||(30260702-30260800)
chr3 (426-577)||(13696721-13696874)
chr3 (464-577)||(3777296-3777411)
chr3 (436-565)||(20307330-20307461)
chr3 (509-577)||(30260804-30260872)
chr3 (474-567)||(54162907-54163002)
[»] chr2 (6 HSPs)
chr2 (426-577)||(15805807-15805960)
chr2 (426-577)||(30518450-30518603)
chr2 (426-570)||(32597354-32597500)
chr2 (426-570)||(27641023-27641169)
chr2 (426-577)||(5614591-5614744)
chr2 (44-77)||(17896892-17896925)
[»] chr7 (11 HSPs)
chr7 (426-577)||(20372496-20372649)
chr7 (426-576)||(31293024-31293176)
chr7 (426-577)||(30586062-30586215)
chr7 (426-577)||(49142000-49142153)
chr7 (436-577)||(47266258-47266403)
chr7 (464-577)||(41743161-41743276)
chr7 (464-577)||(44079877-44079992)
chr7 (480-577)||(22916732-22916831)
chr7 (426-527)||(32031362-32031465)
chr7 (427-578)||(31577394-31577546)
chr7 (44-76)||(41000834-41000866)
[»] chr6 (3 HSPs)
chr6 (426-576)||(4653576-4653728)
chr6 (436-526)||(24765207-24765299)
chr6 (464-575)||(33756435-33756548)
[»] scaffold0051 (1 HSPs)
scaffold0051 (426-577)||(59017-59170)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 217 - 606
Target Start/End: Original strand, 54230522 - 54230910
Alignment:
Q  217 tataactttctttcaattgaggtaatccacttctagacactcttaagcacgggtagcatttaagagacatagaattagtgatattgatcaatgacaaaaa 316  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  54230522 tataactttctttcaattgaggtaatccacttctagaccctgttaagcacgggtagcatttaagagacatagaattagtgacattgatcaatgaaaaaaa 54230621  T
Q  317 gagnnnnnnnntcacttataatattgtggttgacaaatgtcatcaattatatatcatccaaatgctgccatgttgagcacaatgctagtattgttaagaa 416  Q
    |||        | | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54230622 gagaaaaaaatt-atttataatattgtggttgacaaatgtcaccaattatatgtcatccaaatgctgccatgttgagcacaatgctagtattgttaagaa 54230720  T
Q  417 aatctactaggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaattattcctgggtatttgttaaa 516  Q
    |||||||||||||||||||||||||| ||||||||||||||||   |||||||| | |||||||||||||||||||||||||| | ||||||||||||||    
T  54230721 aatctactaggggcatttattttgggaaaaaacaaattattctcggtaataacatatccgggaatgaaaatatgaaaattatttcggggtatttgttaaa 54230820  T
Q  517 agaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttcttttttccaaatataagtagatgggaatacacatt 606  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54230821 agaggtgtttgccgattagcttggcatttttggaaaaattgaaagttacaatttcttttttccaaatctaagtagatgggaatacacatt 54230910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 56080600 - 56080753
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| |||||||| |||||| |||||||||||  |  ||||||| ||||| |||||||||||||||||||  |||| |||||||||||||||| | |||    
T  56080600 ggggcgtttatttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 56080699  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  56080700 tttgacaaataacttgacattcctggaaaaattggaagttacaatttttttttt 56080753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 54230339 - 54230503
Alignment:
Q  33 ctgaatctaaattattcaccttaaaaaatgggaattctaaccacttgattatctgaaagnnnnnnnnnca-----agtgagaattaatttgaactaacag 127  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||          |     |||||||||||||||||||||||||    
T  54230339 ctgaatctaaattattcaccttaaaaaatggaaattctaaccacttgactatccgaaagaaagaaagaaaaaattagtgagaattaatttgaactaacag 54230438  T
Q  128 ctacaaacacgtgatcannnnnnnnnnnnaccaaaccagcatgtcatattggtgagtgataaaca 192  Q
    |||||||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  54230439 ctacaaacacgtgatcatttttattttttaccaaaccagcatgtcatattggtgagtgataaaca 54230503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 436 - 577
Target Start/End: Complemental strand, 2623442 - 2623299
Alignment:
Q  436 ttttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgatt 533  Q
    |||| |||||| ||||||||||| ||  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | ||||||| | | |    
T  2623442 tttttgggaaacacaaattattcctaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcaaat 2623343  T
Q  534 agcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    | |||||||||  || ||||||||||||||||||||| ||||||    
T  2623342 aacttgacattcctgaaaaaattggaagttacaatttttttttt 2623299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 432 - 577
Target Start/End: Original strand, 39499258 - 39499405
Alignment:
Q  432 tttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgcc 529  Q
    |||||||| |||||| |||||||||| | |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | ||||||| |    
T  39499258 tttatttttgggaaacacaaattattttcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggc 39499357  T
Q  530 gattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
     | || |||||||||  || ||||||||||||||||||||| ||||||    
T  39499358 aaataacttgacattcctgaaaaaattggaagttacaatttttttttt 39499405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 432 - 577
Target Start/End: Original strand, 39502597 - 39502744
Alignment:
Q  432 tttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgcc 529  Q
    |||||||| |||||| |||||||||| | |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | ||||||| |    
T  39502597 tttatttttgggaaacacaaattattttcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggc 39502696  T
Q  530 gattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
     | || |||||||||  || ||||||||||||||||||||| ||||||    
T  39502697 aaataacttgacattcctgaaaaaattggaagttacaatttttttttt 39502744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 464 - 577
Target Start/End: Original strand, 24072428 - 24072543
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaag 561  Q
    ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | ||||||| | | || |||||||||  |||||||||||||||    
T  24072428 aataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcaaataacttgacattcctggaaaaattggaag 24072527  T
Q  562 ttacaatttctttttt 577  Q
    ||||||||| ||||||    
T  24072528 ttacaatttttttttt 24072543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 29052167 - 29052013
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||| |  |||||||  ||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  29052167 ggggcgtttgtttttgggaaacacaaattattctcaggaataacatgcccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 29052068  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttac-aatttctttttt 577  Q
    |||| | | || |||||||||  ||||||||||||||||||| ||||| ||||||    
T  29052067 tttggcaaataacttgacattcctggaaaaattggaagttactaatttttttttt 29052013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 436 - 570
Target Start/End: Original strand, 26695836 - 26695972
Alignment:
Q  436 ttttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgatt 533  Q
    |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | ||||||| | | |    
T  26695836 tttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcaaat 26695935  T
Q  534 agcttgacatttttggaaaaattggaagttacaattt 570  Q
    | |||||||||  | ||||||||||||||||||||||    
T  26695936 aacttgacattcctagaaaaattggaagttacaattt 26695972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 9034167 - 9034013
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaaccc-gggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggt 522  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||| |||||||||||||| ||||||  |||| |||||||||||||||| | ||    
T  9034167 ggggcgtttgtttttgggaaacacaaattattcccaggaataacataccccgggaatgaaaatattaaaatttgattcttgggtatttgttaaaaaaagt 9034068  T
Q  523 gtttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    ||||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  9034067 gtttgacaaataacttgacattcctggaaaaattggaagttacaatttttttttt 9034013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 577
Target Start/End: Complemental strand, 40591265 - 40591113
Alignment:
Q  427 gggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgt 524  Q
    |||| ||| |||| |||||| |||||||||||  |  ||||||| ||||| |||||||||||||||||||  |||| ||||||||| |||||| | ||||    
T  40591265 gggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttattaaaaaaagtgt 40591166  T
Q  525 ttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    ||| | | ||  ||||||||  |||||||||||||||||||||||| ||||||    
T  40591165 ttggcaaataatttgacattcctggaaaaattggaagttacaatttttttttt 40591113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 576
Target Start/End: Complemental strand, 128130 - 127994
Alignment:
Q  442 ggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttg 539  Q
    ||||| |||||||||||| |  ||||||| |||||||||||||||||||||||||  |||| ||  |||||||||||||| ||||||  | | || ||||    
T  128130 ggaaacacaaattattctcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgaatatttgttaaaagatgtgttttgcaaataacttg 128031  T
Q  540 acatttttggaaaaattggaagttacaatttcttttt 576  Q
    |||||  | ||||||||  |||||||||||| |||||    
T  128030 acattccttgaaaaattaaaagttacaattttttttt 127994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 464 - 577
Target Start/End: Complemental strand, 45620496 - 45620382
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaag 561  Q
    ||||||| || |||||||||||||| |||||||  ||||||||||||||| ||||| | ||||||||  || | |||||||||  ||| |||||||||||    
T  45620496 aataacatacacgggaatgaaaatacgaaaatttgattcctgggtatttgctaaaaaaagtgtttgcaaataa-cttgacattcctgggaaaattggaag 45620398  T
Q  562 ttacaatttctttttt 577  Q
    ||||||||| ||||||    
T  45620397 ttacaatttttttttt 45620382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 576
Target Start/End: Original strand, 37995500 - 37995604
Alignment:
Q  474 ccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttc 571  Q
    |||||||||||||||||||||||  |||| |||||||||||||||| |  |||||| | | || ||||| |||| ||||||||||| |||||||| |||     
T  37995500 ccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaatgtttggcaaataacttgatatttctggaaaaattgaaagttacattttt 37995599  T
Q  572 ttttt 576  Q
    |||||    
T  37995600 ttttt 37995604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 577
Target Start/End: Original strand, 44506168 - 44506271
Alignment:
Q  476 gggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttctt 573  Q
    |||||||||||||||||||||  |||| |||||||||||||||| | ||||||| | | || ||| |||||  || ||||||||||| ||||||||| ||    
T  44506168 gggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcaaataacttaacattcctgaaaaaattggaaattacaatttttt 44506267  T
Q  574 tttt 577  Q
    ||||    
T  44506268 tttt 44506271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 577
Target Start/End: Complemental strand, 51790310 - 51790163
Alignment:
Q  436 ttttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttg----cc 529  Q
    ||||||||||| |||||||||||  |  ||||||| ||  |||||||||||||||||||||  |||| || |||||| |||||| | |||||||    |     
T  51790310 ttttggggaaacacaaattattcccatgaataacatacatgggaatgaaaatatgaaaatttgattcatgagtatttattaaaataagtgtttggcaact 51790211  T
Q  530 gattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
     | || |||||||||||| | |||||||||||||||| ||| ||||||    
T  51790210 aactaacttgacatttttaggaaaattggaagttacattttttttttt 51790163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 39449473 - 39449505
Alignment:
Q  44 ttattcaccttaaaaaatgggaattctaaccac 76  Q
    ||||||||||||||||||| |||||||||||||    
T  39449473 ttattcaccttaaaaaatgtgaattctaaccac 39449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 425 - 576
Target Start/End: Original strand, 5555195 - 5555348
Alignment:
Q  425 aggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggt 522  Q
    |||||| ||| |||| |||||| |||||||||||| |  ||||||| |||||||||||||||||| ||||||  |||| ||| |||||||||||| | ||    
T  5555195 aggggcgtttgtttttgggaaacacaaattattctcagaaataacatacccgggaatgaaaatataaaaatttgattcttggatatttgttaaaaaaagt 5555294  T
Q  523 gtttgccgattagcttgacatttttggaaaaattggaagttacaatttcttttt 576  Q
    ||||| ||| || |||||||||| |||||||||||||||||||||||| |||||    
T  5555295 gtttggcgaataacttgacatttctggaaaaattggaagttacaattttttttt 5555348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 426 - 570
Target Start/End: Complemental strand, 32550551 - 32550405
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||| ||||  |  ||||||| || ||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  32550551 ggggcgtttgtttttgggaaacacaaataattcacaggaataacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 32550452  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaattt 570  Q
    |||| | | || |||||||||  ||||||||||||||||||||||||    
T  32550451 tttggcaaataacttgacattcctggaaaaattggaagttacaattt 32550405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 45360173 - 45360326
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||  ||||||||||||| ||||||  |||| |||||||||||||||| | |||    
T  45360173 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacctcggaatgaaaatatcaaaatttgattcttgggtatttgttaaaaaaagtg 45360272  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  45360273 tttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 45360326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 475 - 577
Target Start/End: Original strand, 40125463 - 40125567
Alignment:
Q  475 cgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttct 572  Q
    ||||||||||||||||||||||  |||| |||||||||||||||| | ||||||| |   || |||||||||  |||||||||||||||||||||||| |    
T  40125463 cgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcatataacttgacattcctggaaaaattggaagttacaattttt 40125562  T
Q  573 ttttt 577  Q
    |||||    
T  40125563 ttttt 40125567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 14236399 - 14236544
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaattattcctgggtatttgttaaaagaggtgtt 525  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||| |||      ||| |||||||||||||||| | |||||    
T  14236399 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatttga------ttcttgggtatttgttaaaaaaagtgtt 14236492  T
Q  526 tgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    || | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  14236493 tggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 14236544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 448 - 577
Target Start/End: Complemental strand, 43069196 - 43069065
Alignment:
Q  448 acaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacattt 545  Q
    |||||||||||  |  ||||||| || ||||||||||||||||||||||  |||| |||||||||||||||| |  |||||| | | ||  |||||||||    
T  43069196 acaaattattcccaggaataacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaatgtttggcaaataatttgacattt 43069097  T
Q  546 ttggaaaaattggaagttacaatttctttttt 577  Q
     || ||||||||||||||||||||| ||||||    
T  43069096 ctgaaaaaattggaagttacaatttttttttt 43069065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 575
Target Start/End: Original strand, 4643601 - 4643738
Alignment:
Q  440 ggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagct 537  Q
    ||||||| |||||||||||  || ||||||| | || ||||||||||||||||||||  |||| |||||||||||||||| | ||||||| ||| ||  |    
T  4643601 ggggaaacacaaattattcccaagaataacatatccaggaatgaaaatatgaaaatttgattcatgggtatttgttaaaaaaagtgtttggcgaataatt 4643700  T
Q  538 tgacatttttggaaaaattggaagttacaatttctttt 575  Q
    |||||||  |   |||||||||||||||||||| ||||    
T  4643701 tgacattcctaagaaaattggaagttacaatttttttt 4643738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 577
Target Start/End: Original strand, 19565191 - 19565320
Alignment:
Q  450 aaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacattttt 547  Q
    |||||||||  || ||||||| |  ||| ||||||||||||||||||  |||| ||||||||| |||||| | ||||||| | | || |||||||||  |    
T  19565191 aaattattcccaagaataacatattcggaaatgaaaatatgaaaatttgattcttgggtatttcttaaaaaaagtgtttggcaaataacttgacattcct 19565290  T
Q  548 ggaaaaattggaagttacaatttctttttt 577  Q
    ||||||||||||||||||||||| ||||||    
T  19565291 ggaaaaattggaagttacaatttttttttt 19565320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 464 - 577
Target Start/End: Original strand, 21620079 - 21620195
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaaga-ggtgtttgccgattagcttgacatttttggaaaaattggaa 560  Q
    ||||||| ||| |||||||||||||||||||||  |||| |||||||||||||||| | |||||||  | | || |||||||||  | ||||||||||||    
T  21620079 aataacatacctgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaggtgtttagcaaataacttgacattcctagaaaaattggaa 21620178  T
Q  561 gttacaatttctttttt 577  Q
    |||||||||| ||||||    
T  21620179 gttacaatttttttttt 21620195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 577
Target Start/End: Original strand, 3656589 - 3656669
Alignment:
Q  497 attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| ||||| |||||||||| | ||||||| | | || |||||||||  ||||||||||| |||||||||||| ||||||    
T  3656589 attcttgggtgtttgttaaaaaaagtgtttggcaaataacttgacattcctggaaaaattgaaagttacaatttttttttt 3656669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 6694147 - 6694052
Alignment:
Q  478 gaatgaaaatatgaaaatt--attcctggg-tatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaattt 570  Q
    |||||||||||||||||||  |||| |||| |||||||||||| | ||||||  | | || |||||||||  || |||||||||||||||||||||    
T  6694147 gaatgaaaatatgaaaatttgattcgtggggtatttgttaaaaaaagtgtttagcaaataacttgacattcctgaaaaaattggaagttacaattt 6694052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 570
Target Start/End: Original strand, 3027742 - 3027872
Alignment:
Q  443 gaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgt-taaaagaggtgtttgccgattagcttg 539  Q
    |||| |||||||||||| |  ||||||  |||  ||||||||||||||||||||  ||||||||||||||||  |||| | ||||||| | | || ||||    
T  3027742 gaaacacaaattattctcaggaataacttacctcggaatgaaaatatgaaaatttgattcctgggtatttgtcaaaaaaaagtgtttgacaaataacttg 3027841  T
Q  540 acatttttggaaaaattggaagttacaattt 570  Q
    |||||   || ||||||| ||||||||||||    
T  3027842 acattcacgggaaaattgtaagttacaattt 3027872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 38567723 - 38567570
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||| ||| | |||    
T  38567723 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttcaaaaaagtg 38567624  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || ||||||||| ||||||||||||||||||||||||| ||||||    
T  38567623 tttggcaaataacttgacattcttggaaaaattggaagttacaatttttttttt 38567570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 426 - 575
Target Start/End: Original strand, 9686366 - 9686517
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  9686366 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 9686465  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttt 575  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||    
T  9686466 tttgtcaaataacttgacattcctggaaaaattggaagttacaatttttttt 9686517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 2734850 - 2735003
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| ||||| |||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  2734850 ggggcgtttgtttttgggaaacacaaactattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 2734949  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  2734950 tttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 2735003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 436 - 570
Target Start/End: Complemental strand, 1197750 - 1197614
Alignment:
Q  436 ttttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgatt 533  Q
    |||| |||||| |||||||||||| |  ||||||| | |||||||||||||||||||||||  ||||||||||||||||||||| | ||||||| | | |    
T  1197750 tttttgggaaacacaaattattctcaggaataacatatccgggaatgaaaatatgaaaatttgattcctgggtatttgttaaaaaaagtgtttggcaaat 1197651  T
Q  534 agcttgacatttttggaaaaattggaagttacaattt 570  Q
    | |||||||||   | |||||||||||||||||||||    
T  1197650 aacttgacattccagaaaaaattggaagttacaattt 1197614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 464 - 577
Target Start/End: Complemental strand, 35563900 - 35563785
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaag 561  Q
    ||||||| | |||||||||||||||||||||||  |||| |||||||||||||||| | ||||||| | | || |||||||||  |||||||||||||||    
T  35563900 aataacatatccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcaaataacttgacattcctggaaaaattggaag 35563801  T
Q  562 ttacaatttctttttt 577  Q
    ||||||||| ||||||    
T  35563800 ttacaatttttttttt 35563785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 426 - 570
Target Start/End: Complemental strand, 18916353 - 18916207
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| ||| |||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  18916353 ggggcgtttgtttttgggaaacacaaattattccgaggaataacatacctgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 18916254  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaattt 570  Q
    |||| | | ||  ||||||||  ||||||||||||||||||||||||    
T  18916253 tttggcaaataatttgacattcctggaaaaattggaagttacaattt 18916207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 426 - 575
Target Start/End: Original strand, 38526485 - 38526636
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| | |||||||||  |  ||||||| |||||||||||||||||||||||||  |||| || ||||||||||||| | |||    
T  38526485 ggggcgtttgtttttgggaaacataaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgagtatttgttaaaaaaagtg 38526584  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttt 575  Q
    |||| | | || |||||||||  || ||||||||||||||||||||| ||||    
T  38526585 tttggcaaataacttgacattcctgaaaaaattggaagttacaatttttttt 38526636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 570
Target Start/End: Complemental strand, 11661475 - 11661329
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  || ||||| | || ||||||||||||||||||||||  |||| |  ||||||||||||| | |||    
T  11661475 ggggcgtttgtttttgggaaacacaaattattcccaagaataagatactcgggaatgaaaatatgaaaatttgattcttaagtatttgttaaaaaaagtg 11661376  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaattt 570  Q
    |||| | | || ||||||||| ||| |||||||||||||||||||||    
T  11661375 tttggcaaataacttgacattcttgaaaaaattggaagttacaattt 11661329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 41486469 - 41486623
Alignment:
Q  425 aggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggt 522  Q
    |||||| ||| |||| |||||| |||||||||||  |  ||||||| | |||||| ||||||||||||||||  |||| ||| |||||||||||| | ||    
T  41486469 aggggcgtttgtttttgggaaacacaaattattcccaggaataacatatccgggactgaaaatatgaaaatttgattcttggatatttgttaaaaaaagt 41486568  T
Q  523 gtttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    ||||| | | || |||||||||  |||| ||||||||||||||||||| ||||||    
T  41486569 gtttggcaaataacttgacattcctggataaattggaagttacaatttttttttt 41486623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 517
Target Start/End: Original strand, 24697547 - 24697640
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaa 517  Q
    ||||| ||| ||||||||||| | ||||||||| ||  ||||||| ||  |||||||||||||||||||||  |||| ||||||||||||||||    
T  24697547 ggggcgtttgttttggggaaacataaattattcctaggaataacatacatgggaatgaaaatatgaaaatttgattcatgggtatttgttaaaa 24697640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 496
Target Start/End: Original strand, 1996318 - 1996388
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt 496  Q
    ||||| ||| |||| |||||| |||||||||||| |  ||||||| | ||||||| |||||||||||||||    
T  1996318 ggggcgtttgtttttgggaaacacaaattattctcaggaataacatatccgggaacgaaaatatgaaaatt 1996388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 22213267 - 22213420
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  22213267 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 22213366  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || ||||||||| ||| ||||||||||||||||||||| ||||||    
T  22213367 tttggcaaataacttgacattcttgaaaaaattggaagttacaatttttttttt 22213420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 25898127 - 25897974
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  25898127 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 25898028  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  || ||||||||||||||||||||| ||||||    
T  25898027 tttggcaaataacttgacattcctgaaaaaattggaagttacaatttttttttt 25897974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 426 - 570
Target Start/End: Original strand, 36275536 - 36275682
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| ||||||||||   |  ||||||| || ||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  36275536 ggggcgtttgtttttgggaaacacaaattatttccaggaataacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 36275635  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaattt 570  Q
    |||| | | || |||||||||  ||||||||||||||||||||||||    
T  36275636 tttggcaaataacttgacattcctggaaaaattggaagttacaattt 36275682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 448 - 577
Target Start/End: Complemental strand, 30494065 - 30493934
Alignment:
Q  448 acaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacattt 545  Q
    |||||||||||  |  ||||| | |||||||||||||||||||||||||  |||  |||||||||||||||| | ||||||| | | || |||||||||     
T  30494065 acaaattattcccaggaataatatacccgggaatgaaaatatgaaaatttgattattgggtatttgttaaaaaaagtgtttggcaaataacttgacattc 30493966  T
Q  546 ttggaaaaattggaagttacaatttctttttt 577  Q
     |||||||||||||||||||||||| ||||||    
T  30493965 ctggaaaaattggaagttacaatttttttttt 30493934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 448 - 577
Target Start/End: Complemental strand, 30534408 - 30534277
Alignment:
Q  448 acaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacattt 545  Q
    |||||||||||  |  ||||| | |||||||||||||||||||||||||  |||  |||||||||||||||| | ||||||| | | || |||||||||     
T  30534408 acaaattattcccaggaataatatacccgggaatgaaaatatgaaaatttgattattgggtatttgttaaaaaaagtgtttggcaaataacttgacattc 30534309  T
Q  546 ttggaaaaattggaagttacaatttctttttt 577  Q
     |||||||||||||||||||||||| ||||||    
T  30534308 ctggaaaaattggaagttacaatttttttttt 30534277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 26945663 - 26945816
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| ||||||||||| ||||||||||   |  ||||||| |   |||||||||||||||||||||  |||| || ||||||||||||| | |||    
T  26945663 ggggcgtttgttttggggaaacacaaattatttccagaaataacatatatgggaatgaaaatatgaaaatttgattcttgtgtatttgttaaaaaaagtg 26945762  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  26945763 tttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 26945816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 426 - 576
Target Start/End: Original strand, 26674058 - 26674210
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| ||||||||||| ||||||||||   |  ||||||| |   |||||||||||||||||||||  |||| || ||||||||||||| | |||    
T  26674058 ggggcgtttgttttggggaaacacaaattatttccagaaataacatatatgggaatgaaaatatgaaaatttgattcttgtgtatttgttaaaaaaagtg 26674157  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttcttttt 576  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| |||||    
T  26674158 tttggcaaataacttgacattcctggaaaaattggaagttacaattttttttt 26674210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 575
Target Start/End: Original strand, 11740535 - 11740686
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| ||||||||||| |||||||| ||| |  ||||||| || ||||||||||||||||||||||  ||||||| ||||||||||||| | |||    
T  11740535 ggggcgtttgttttggggaaacacaaattactctcagaaataacatactcgggaatgaaaatatgaaaatttgattcctgtgtatttgttaaaaaaagtg 11740634  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttt 575  Q
    |||| | | || |||||||||  | | ||||| |||||||||| ||| ||||    
T  11740635 tttggcaaataacttgacattccttggaaaataggaagttacattttttttt 11740686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 576
Target Start/End: Complemental strand, 42394179 - 42394081
Alignment:
Q  480 atgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttcttttt 576  Q
    |||||||||||||||||  |||| |||||||||||||||| | ||||||| | | || |||||||||  ||||||||||| |||||||||||| |||||    
T  42394179 atgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcaaataacttgacattcatggaaaaattgaaagttacaattttttttt 42394081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 497 - 577
Target Start/End: Complemental strand, 13946515 - 13946435
Alignment:
Q  497 attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| |||||||||||||||| |  |||||| | | || |||||||||| |||||||||||||||||||||||| ||||||    
T  13946515 attcttgggtatttgttaaaaaaaatgtttggcaaataacttgacatttctggaaaaattggaagttacaatttttttttt 13946435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 8082551 - 8082398
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  8082551 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 8082452  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  8082451 tttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 8082398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 30801212 - 30801059
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||| |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  30801212 ggggcgtttgtttttgggaaacacaaattattctcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 30801113  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||| ||| ||||||    
T  30801112 tttggcaaataacttgacattcctggaaaaattggaagttacattttttttttt 30801059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 426 - 576
Target Start/End: Complemental strand, 28247073 - 28246921
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  28247073 ggggcgtttgtttttgggaaatacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 28246974  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttcttttt 576  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| |||||    
T  28246973 tttgtcaaataacttgacattcgtggaaaaattggaagttacaattttttttt 28246921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 45572658 - 45572811
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| | ||||||||||    ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  45572658 ggggcgtttgtttttgggaaacataaattattctcgggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 45572757  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  45572758 tttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 45572811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 436 - 577
Target Start/End: Complemental strand, 11685941 - 11685798
Alignment:
Q  436 ttttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgatt 533  Q
    |||| |||||| ||||||||||| ||  ||||||| ||||| |||||||||||||||||||  |||| |||||||||||||||| | ||||||| | | |    
T  11685941 tttttgggaaacacaaattattcataggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcaaat 11685842  T
Q  534 agcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    | |||||||||  || ||||||||||||||||||||| ||||||    
T  11685841 aacttgacattcctgtaaaaattggaagttacaatttttttttt 11685798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 426 - 575
Target Start/End: Original strand, 18996574 - 18996725
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| ||||||||||| ||  ||||||| ||||| |||||||||||||||||||  |||| |||||||||||||||| | |||    
T  18996574 ggggcgtttgtttttgggaaacacaaattattcctaggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 18996673  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttt 575  Q
    ||||   | || |||||||||  |||||||||||||||||||||||| ||||    
T  18996674 tttggtaaataacttgacattcctggaaaaattggaagttacaatttttttt 18996725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 426 - 575
Target Start/End: Original strand, 18999113 - 18999264
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| ||||||||||| ||  ||||||| ||||| |||||||||||||||||||  |||| |||||||||||||||| | |||    
T  18999113 ggggcgtttgtttttgggaaacacaaattattcctaggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 18999212  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttt 575  Q
    ||||   | || |||||||||  |||||||||||||||||||||||| ||||    
T  18999213 tttggtaaataacttgacattcctggaaaaattggaagttacaatttttttt 18999264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 37609303 - 37609150
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||| ||||||||||||||||  |||| |||||||||||||||| | |||    
T  37609303 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggagtgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 37609204  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  | |||||||||||||||||||||| ||||||    
T  37609203 tttggcaaataacttgacattcctagaaaaattggaagttacaatttttttttt 37609150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 41957977 - 41958130
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||| | |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  41957977 ggggcgtttgtttttgggaaacacaaattattttcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 41958076  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  || |||||||||||||||| |||| ||||||    
T  41958077 tttggcaaataacttgacattcctgaaaaaattggaagttacgatttttttttt 41958130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 24373070 - 24373222
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |  ||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  24373070 ggggcgtttgtttttgggaaacacaaattattcccaggaataacata-tcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 24373168  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  24373169 tttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 24373222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 464 - 577
Target Start/End: Complemental strand, 53151708 - 53151593
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaag 561  Q
    ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| |  |||||| | | || |||||||||  |||||||||||||||    
T  53151708 aataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaatgtttggcaaataacttgacattcctggaaaaattggaag 53151609  T
Q  562 ttacaatttctttttt 577  Q
    ||||| ||| ||||||    
T  53151608 ttacattttttttttt 53151593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 474 - 570
Target Start/End: Original strand, 30260702 - 30260800
Alignment:
Q  474 ccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaattt 570  Q
    |||||||||||||||||||||||  |||| |||||||||||||||| | ||||||| | | || |||||||||  ||||||||||||||||||||||||    
T  30260702 ccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcaaataacttgacattcctggaaaaattggaagttacaattt 30260800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 13696874 - 13696721
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| ||||| |||||||||||||||||||  |||  || ||||||||||||| | |||    
T  13696874 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattattgagtatttgttaaaaaaagtg 13696775  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  || ||||||||||||||||||||| ||||||    
T  13696774 tttggcaaataacttgacattcctgaaaaaattggaagttacaatttttttttt 13696721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 577
Target Start/End: Original strand, 3777296 - 3777411
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaag 561  Q
    ||||||| | ||| |||||||||||||||||||  |||| |||||||||||||||| | ||||||| |   || |||||||||  |||||||||||||||    
T  3777296 aataacatatccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcagataacttgacattcctggaaaaattggaag 3777395  T
Q  562 ttacaatttctttttt 577  Q
    ||||||||| ||||||    
T  3777396 ttacaatttttttttt 3777411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 565
Target Start/End: Original strand, 20307330 - 20307461
Alignment:
Q  436 ttttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgatt 533  Q
    |||||| |||| |||||||||| | |  ||||||| | ||| |||||||| ||| ||||||  |||  |||||||||||||||| | ||||||| | | |    
T  20307330 ttttggagaaacacaaattattttcaggaataacatatccgagaatgaaattataaaaatttgattattgggtatttgttaaaataagtgtttggcaaat 20307429  T
Q  534 agcttgacatttttggaaaaattggaagttac 565  Q
    | ||| ||||| ||||||||| ||||||||||    
T  20307430 aacttaacattcttggaaaaactggaagttac 20307461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 577
Target Start/End: Original strand, 30260804 - 30260872
Alignment:
Q  509 ttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    ||||||||| | ||||||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  30260804 ttgttaaaaaaagtgtttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 30260872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 567
Target Start/End: Complemental strand, 54163002 - 54162907
Alignment:
Q  474 ccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaa 567  Q
    |||||||| ||||||||||||||  |||||| ||||||| |||| | | ||||||| ||| ||  ||||||||  ||| |||||| ||||||||||    
T  54163002 ccgggaataaaaatatgaaaatttgattcctaggtattttttaataaaagtgtttggcgaataagttgacattcctgggaaaattagaagttacaa 54162907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 15805960 - 15805807
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||| ||||||  |||| |||||||||||||||| | |||    
T  15805960 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatattaaaatttgattcttgggtatttgttaaaaaaagtg 15805861  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||| |||||||||||||||||||||||| ||||||    
T  15805860 tttgacaaataacttgacatttctggaaaaattggaagttacaatttttttttt 15805807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 30518450 - 30518603
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  30518450 ggggcgtttgtttttgggaaacacaaattattcccatgaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 30518549  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  30518550 tttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 30518603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 570
Target Start/End: Original strand, 32597354 - 32597500
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||| |  ||||| | | |||||||||||||||||||||||  |||| |||||||||||||||| |  ||    
T  32597354 ggggcgtttgtttttgggaaacacaaattattctcagaaataatatatccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaatg 32597453  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaattt 570  Q
    |||  | | || |||||||||  ||||||||||||||||||||||||    
T  32597454 tttagcaaataacttgacattcctggaaaaattggaagttacaattt 32597500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 426 - 570
Target Start/End: Original strand, 27641023 - 27641169
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| | |||||||||  |  ||||||| || ||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  27641023 ggggcgtttgtttttgggaaacaaaaattattcccaggaataacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 27641122  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaattt 570  Q
    |||| | | || |||| ||||  ||||||||||| ||||||||||||    
T  27641123 tttggcaaataacttggcattcctggaaaaattgaaagttacaattt 27641169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 5614744 - 5614591
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| ||||| |||||  |  ||||| | || ||||||||||||||| ||||||  |||| ||| |||||||||||| | |||    
T  5614744 ggggcgtttgtttttgggaaacacaaactattcccaggaataatatactcgggaatgaaaatataaaaatttgattcttggatatttgttaaaaaaagtg 5614645  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || ||||||||| |||||||||||| |||||||||||| ||||||    
T  5614644 tttggcaaataacttgacattcttggaaaaattgaaagttacaatttttttttt 5614591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 17896892 - 17896925
Alignment:
Q  44 ttattcaccttaaaaaatgggaattctaaccact 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  17896892 ttattcaccttaaaaaatgtgaattctaaccact 17896925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 20372649 - 20372496
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| ||||| |||||||||||||||||||  |||| || ||||||||||||| | |||    
T  20372649 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattcttgtgtatttgttaaaaaaagtg 20372550  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  |||||||||||||||||||||||| ||||||    
T  20372549 tttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttt 20372496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 426 - 576
Target Start/End: Original strand, 31293024 - 31293176
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  31293024 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 31293123  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttcttttt 576  Q
    |||| | | || |||||||||   | ||||||||||||||||||||| |||||    
T  31293124 tttggcaaataacttgacattcccgaaaaaattggaagttacaattttttttt 31293176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 30586062 - 30586215
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| ||||||||||   |  ||||||| |||||||||||||||||||||||||  |||| || ||||||||||||| | |||    
T  30586062 ggggcgtttgtttttgggaaacacaaattatttccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgagtatttgttaaaaaaagtg 30586161  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  || ||||||||||||||||||||| ||||||    
T  30586162 tttggcaaataacttgacattcctgaaaaaattggaagttacaatttttttttt 30586215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 49142153 - 49142000
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| || ||||||||  |  ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| | |||    
T  49142153 ggggcgtttgtttttgggaaacactaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtg 49142054  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||| | | || |||||||||  || ||||||||||||||||| ||| ||||||    
T  49142053 tttggcaaataacttgacattcctgaaaaaattggaagttacattttttttttt 49142000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 436 - 577
Target Start/End: Original strand, 47266258 - 47266403
Alignment:
Q  436 ttttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgatt 533  Q
    |||| |||||| |||||||||||| |  ||||||| | |||||||||||||||||||||||  |||| |||||||||||||||| | |||||||   | |    
T  47266258 tttttgggaaacacaaattattctcaggaataacatatccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggaaaat 47266357  T
Q  534 agcttgacatttttgg--aaaaattggaagttacaatttctttttt 577  Q
    | |||||||||  |||  ||||||||||||||||||||| ||||||    
T  47266358 aacttgacattcctggaaaaaaattggaagttacaatttttttttt 47266403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 577
Target Start/End: Original strand, 41743161 - 41743276
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaag 561  Q
    ||||||| |||||| ||||||||||||||||||  |||| ||| |||||||||||| | ||||||| | | || |||||||||  || ||||||||||||    
T  41743161 aataacatacccggaaatgaaaatatgaaaatttgattcttggatatttgttaaaaaaagtgtttggcaaataacttgacattcctgaaaaaattggaag 41743260  T
Q  562 ttacaatttctttttt 577  Q
    ||||||||| ||||||    
T  41743261 ttacaatttttttttt 41743276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 577
Target Start/End: Original strand, 44079877 - 44079992
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaag 561  Q
    ||||||| ||||| |||||||||||||||||||  |||| | |||||||||||||| | ||||||| | | || ||||| |||  |||||||||||||||    
T  44079877 aataacatacccgagaatgaaaatatgaaaatttgattcttaggtatttgttaaaaaaagtgtttgacaaataacttgatattactggaaaaattggaag 44079976  T
Q  562 ttacaatttctttttt 577  Q
    ||||||||| ||||||    
T  44079977 ttacaatttttttttt 44079992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 577
Target Start/End: Complemental strand, 22916831 - 22916732
Alignment:
Q  480 atgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||||||||||||| ||  ||||||| ||||||||||||| |  |||||  | | || ||||||||| |||||||||||| |||||||||||| ||||||    
T  22916831 atgaaaatatgaaattttgattcctgagtatttgttaaaaaaaatgtttagcaaataacttgacattcttggaaaaattgaaagttacaatttttttttt 22916732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 527
Target Start/End: Original strand, 32031362 - 32031465
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| ||||||||||||||  ||||||| | | |||||||||||||||||||||  |||| ||| |||||||| ||| | |||    
T  32031362 ggggcgtttgtttttgggaaacacaaattattcttaggaataacatatctgggaatgaaaatatgaaaatttgattcttggatatttgttcaaaaaagtg 32031461  T
Q  524 tttg 527  Q
    ||||    
T  32031462 tttg 32031465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 578
Target Start/End: Original strand, 31577394 - 31577546
Alignment:
Q  427 gggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgt 524  Q
    |||| |||||||||||||| | |||||||| || |  ||||||| || ||| ||||||||||| ||||||  |||| |||||||||||||||| | ||||    
T  31577394 gggcgtttattttggggaaca-caaattat-ctcaggaataacatactcggaaatgaaaatataaaaatttgattcttgggtatttgttaaaaaaagtgt 31577491  T
Q  525 ttgccgattagcttgacatttttggaaaaattggaagttaca-atttcttttttc 578  Q
    ||  | | || |||||||||  |||||| ||||||||||||| |||| |||||||    
T  31577492 ttagcaaataacttgacattcctggaaatattggaagttacagattttttttttc 31577546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 41000834 - 41000866
Alignment:
Q  44 ttattcaccttaaaaaatgggaattctaaccac 76  Q
    ||||||||||||||||||| |||||||||||||    
T  41000834 ttattcaccttaaaaaatgtgaattctaaccac 41000866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 426 - 576
Target Start/End: Original strand, 4653576 - 4653728
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||  |  ||||||| ||||| |||||||||||||||||||  |||| | |||||||||||||| | |||    
T  4653576 ggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattcttaggtatttgttaaaaaaagtg 4653675  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttcttttt 576  Q
    |||| | | || |||||||||  || ||||||||||||||||||||| |||||    
T  4653676 tttggcaaataacttgacattcctgaaaaaattggaagttacaattttttttt 4653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 526
Target Start/End: Original strand, 24765207 - 24765299
Alignment:
Q  436 ttttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgttt 526  Q
    ||||||||||| |||||||||||  |  ||||| | || ||||||||||||||||||||||  |||||||| |||||||||||| | ||||||    
T  24765207 ttttggggaaacacaaattattcccaggaataatatactcgggaatgaaaatatgaaaatttgattcctggatatttgttaaaaaaagtgttt 24765299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 575
Target Start/End: Original strand, 33756435 - 33756548
Alignment:
Q  464 aataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtgtttgccgattagcttgacatttttggaaaaattggaag 561  Q
    ||||||| | |||||||||||||||||||||||  ||||  ||||||||||||||| | || |||| | | || |||||||||  |  ||||||||||||    
T  33756435 aataacatatccgggaatgaaaatatgaaaatttgattctcgggtatttgttaaaaaaagtatttggcaaataacttgacattcctaaaaaaattggaag 33756534  T
Q  562 ttacaatttctttt 575  Q
    ||||| ||| ||||    
T  33756535 ttacattttttttt 33756548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 426 - 577
Target Start/End: Original strand, 59017 - 59170
Alignment:
Q  426 ggggcatttattttggggaaaaacaaattattcttaataataacaaacccgggaatgaaaatatgaaaatt--attcctgggtatttgttaaaagaggtg 523  Q
    ||||| ||| |||| |||||| |||||||||||     ||||||| |||||||||||||||||||||||||  |||| |||||||||||||| | | |||    
T  59017 ggggcgtttgtttttgggaaacacaaattattcccgggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaagaaaagtg 59116  T
Q  524 tttgccgattagcttgacatttttggaaaaattggaagttacaatttctttttt 577  Q
    |||  | | || |||||| ||  |||||||||||||||||||||||| ||||||    
T  59117 ttttgcaaataacttgacgttcctggaaaaattggaagttacaatttttttttt 59170  T

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