View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5156_low_4 (Length: 428)
Name: NF5156_low_4
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5156_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 78 - 409
Target Start/End: Complemental strand, 40542161 - 40541830
Alignment:
| Q |
78 |
tttgattaattctaaatcctcaaaaaggttgacgtgaagctgagttgttgttgtttcccgcccaaccatcaacaggtaactgatgaacattctgcatatt |
177 |
Q |
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| T |
40542161 |
tttgattaattctaaatcctcaaaaaggttgacgtgaagctgagttgttgttgtttcccgcccaaccatcaacaggtagctgatgaacattctgcatatt |
40542062 |
T |
|
| Q |
178 |
caatggcaaattgaaaaacggtaaaccagaagatggatcaggaaatggattgttattattattgccgccaccgccaccaccggagccttgagaacctcct |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40542061 |
caatggcaaattgaaaaacggtaaaccagaagatggatcaggaaatggattgttattattattgccgccaccgccaccaccggagccttgagaacctcct |
40541962 |
T |
|
| Q |
278 |
ccagcctcagcctgcatctgaagctgctcctcttccaacggcaacttctcataagcaacattagtaaaagaagctgcaatcacaatcaccggcccggccg |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40541961 |
ccagcctcagcctgcatctgaagctgctcctcttccaacggcaatttctcataagcaacattagtaaaagaagctgcaatcacaatcaccggcccggccg |
40541862 |
T |
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| Q |
378 |
cgataagctcaccaaccacgctacctcccacc |
409 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40541861 |
cgataagctcaccaaccacgctacctcccacc |
40541830 |
T |
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