View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5156_low_9 (Length: 227)

Name: NF5156_low_9
Description: NF5156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5156_low_9
NF5156_low_9
[»] chr4 (4 HSPs)
chr4 (1-216)||(54230081-54230298)
chr4 (1-160)||(6409431-6409590)
chr4 (1-117)||(24958126-24958241)
chr4 (97-161)||(19657795-19657858)
[»] chr1 (3 HSPs)
chr1 (24-160)||(11408342-11408478)
chr1 (5-160)||(6504283-6504438)
chr1 (5-43)||(49098282-49098320)
[»] scaffold0009 (1 HSPs)
scaffold0009 (34-164)||(53888-54018)
[»] chr7 (1 HSPs)
chr7 (1-112)||(3958908-3959021)
[»] scaffold0341 (1 HSPs)
scaffold0341 (5-160)||(5966-6121)
[»] chr8 (4 HSPs)
chr8 (10-160)||(6443436-6443587)
chr8 (59-160)||(10408255-10408356)
chr8 (64-112)||(13995358-13995406)
chr8 (75-160)||(5994053-5994139)
[»] chr6 (2 HSPs)
chr6 (53-164)||(11139604-11139715)
chr6 (80-162)||(15150314-15150395)
[»] chr3 (2 HSPs)
chr3 (1-48)||(14993500-14993547)
chr3 (1-43)||(27741689-27741731)
[»] chr5 (1 HSPs)
chr5 (45-125)||(6989302-6989381)
[»] chr2 (1 HSPs)
chr2 (73-126)||(11163642-11163695)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 54230298 - 54230081
Alignment:
Q  1 caacttttgtttatgttgttgtgaggagggttatctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54230298 caacttttgtttatgttgttgtgtggagggttatctttgattttggtgttagctttgtttttggtgtttccttttattgatttagaatatagccctttgt 54230199  T
Q  101 taggtgatgttttctattggttttttagattctatctttgatgcacgcgtgtatgagtttacaa--ggatgctcctatcttttgtatgttgctattttac 198  Q
    |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| |||||    
T  54230198 taggtgattttttctgttggttttttagattcgatctttgatgcacgcgtgtatgagtttacaattgggtgctcctatcttttgtatgttgctactttac 54230099  T
Q  199 gatgcttatggtgatgat 216  Q
    ||||||||||||| ||||    
T  54230098 gatgcttatggtggtgat 54230081  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 6409590 - 6409431
Alignment:
Q  1 caacttttgtttatgttgttgtgaggagggttatctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgt 100  Q
    ||||||||||||||||| |||||  |||| || | |||||||  |||| ||||||||||||| |||||| |||||||| |||| ||| ||||||||||||    
T  6409590 caacttttgtttatgttattgtgcagaggtttgtttttgattgtggtgttagctttgtttttggtgttttcttttatttatttcgaagatagccctttgt 6409491  T
Q  101 taggtgatgttttctattggttttttagattctatctttgatgcacgcgtgtatgagttt 160  Q
    ||| |||| |||||||| ||||||||  ||  ||||||||||||||| ||||||| ||||    
T  6409490 tagatgatattttctataggttttttgaatattatctttgatgcacgggtgtatgggttt 6409431  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24958126 - 24958241
Alignment:
Q  1 caacttttgtttatgttgttgtgaggagggttatctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgt 100  Q
    ||||||||||||||||| ||||| ||||| || | |||||||  |||| ||||||||||||| |||||||| ||||||||||| | | ||||| ||||||    
T  24958126 caacttttgtttatgttattgtgcggaggtttgtatttgattgtggtgttagctttgtttttggtgtttcc-tttattgattttggagatagctctttgt 24958224  T
Q  101 taggtgatgttttctat 117  Q
    |||||| ||||||||||    
T  24958225 taggtggtgttttctat 24958241  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 19657858 - 19657795
Alignment:
Q  97 ttgttaggtgatgttttctattggttttttagattctatctttgatgcacgcgtgtatgagttta 161  Q
    |||||||||| |||||  | | ||||||||||||| ||| ||||||||||| |||||||||||||    
T  19657858 ttgttaggtggtgtttcgtgtaggttttttagattttat-tttgatgcacgggtgtatgagttta 19657795  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 11408342 - 11408478
Alignment:
Q  24 aggagggttatctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgttaggtgatgttttctattggttt 123  Q
    |||||| || |||||||||  |||| ||||||||||||| |||||||||||||||||||| | | ||||| |||||||||||| ||||||||||   |||    
T  11408342 aggaggtttgtctttgattgtggtgttagctttgtttttggtgtttccttttattgatttcggagatagctctttgttaggtggtgttttctataaattt 11408441  T
Q  124 tttagattctatctttgatgcacgcgtgtatgagttt 160  Q
    ||| |||| | ||||||||||||| ||||||||||||    
T  11408442 tttggattttgtctttgatgcacgggtgtatgagttt 11408478  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 6504283 - 6504438
Alignment:
Q  5 ttttgtttatgttgttgtgaggagggttatctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgttagg 104  Q
    ||||||||||||||||||| ||||| || ||||| |||   ||| ||||||||||||| |||||| ||||||||||||| ||| ||| ||||||||||||    
T  6504283 ttttgtttatgttgttgtgcggaggtttgtctttaattgttgtgttagctttgtttttggtgttttcttttattgatttcgaagataaccctttgttagg 6504382  T
Q  105 tgatgttttctattggttttttagattctatctttgatgcacgcgtgtatgagttt 160  Q
       |||||  |||  ||||||| |||| | |||||||||||||  |||||| ||||    
T  6504383 atgtgtttcttataagttttttggattttgtctttgatgcacggatgtatgggttt 6504438  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 49098320 - 49098282
Alignment:
Q  5 ttttgtttatgttgttgtgaggagggttatctttgattt 43  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  49098320 ttttgtttatgttgttgtgcggagggttgtctttgattt 49098282  T

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Target: scaffold0009 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 54018 - 53888
Alignment:
Q  34 tctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgttaggtgatgttttctattggttttttagattct 133  Q
    |||||||||| ||||  |||||||||||| |||||||||||||||||||| | | ||| |||||||||||| ||||||| || | ||||||||  ||| |    
T  54018 tctttgattttggtgtcagctttgtttttggtgtttccttttattgattttggagatatccctttgttaggagatgtttcctgtaggttttttgaatttt 53919  T
Q  134 atctttgatgcacgcgtgtatgagtttacaa 164  Q
     ||||||||||||| ||||||||||||||||    
T  53918 gtctttgatgcacgggtgtatgagtttacaa 53888  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3958908 - 3959021
Alignment:
Q  1 caacttttgtttatgttgttgtgaggagggttatctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctt--t 98  Q
    ||||||||||||||||||||||| |||||||| |||| ||||| |||| ||||||| |||||||||||||||||||||||||| ||| |||| ||||  |    
T  3958908 caacttttgtttatgttgttgtgcggagggttgtcttggattttggtgttagctttattttttgtgtttccttttattgatttcgaagatagtccttaat 3959007  T
Q  99 gttaggtgatgttt 112  Q
    |||||||| |||||    
T  3959008 gttaggtggtgttt 3959021  T

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Target: scaffold0341 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 5966 - 6121
Alignment:
Q  5 ttttgtttatgttgttgtgaggagggttatctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgttagg 104  Q
    ||||||||||||||||||| ||||| || ||||| |||   ||| ||||||||||||| |||||| ||||||||||||| ||| ||| ||||||||||||    
T  5966 ttttgtttatgttgttgtgcggaggtttgtctttaattgttgtgttagctttgtttttggtgttttcttttattgatttcgaagataaccctttgttagg 6065  T
Q  105 tgatgttttctattggttttttagattctatctttgatgcacgcgtgtatgagttt 160  Q
       |||||  |||  ||||||| |||| | |||||||||||||  |||||| ||||    
T  6066 atgtgtttcttataagttttttggattttgtctttgatgcacggatgtatgggttt 6121  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 6443587 - 6443436
Alignment:
Q  10 tttatgttgttgtgaggagggttatctttgatttcggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgttaggtgatg 109  Q
    |||| ||||||||| | ||| || |||||||||  |||| ||||||||||||| ||||||||||||||||||||   | ||||||||||| || ||| ||    
T  6443587 tttacgttgttgtgcgaaggtttgtctttgattgtggtgttagctttgtttttggtgtttccttttattgattttagagatagccctttggtaagtggtg 6443488  T
Q  110 ttttctat-tggttttttagattctatctttgatgcacgcgtgtatgagttt 160  Q
    |||||||| |  | |||| |||| ||| || |||||||| ||||||||||||    
T  6443487 ttttctatctattattttggattttatattagatgcacgagtgtatgagttt 6443436  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 10408356 - 10408255
Alignment:
Q  59 tttttgtgtttccttttattgatttagaatatagccctttgttaggtgatgttttctattggttttttagattctatctttgatgcacgcgtgtatgagt 158  Q
    |||| |||||||  ||||||||||| | | ||| |||||||||||| | ||||| |||| |||||||| |||| |||||||||| || | ||||||| ||    
T  10408356 ttttggtgtttctatttattgatttcggagataaccctttgttaggaggtgtttcctataggttttttggattttatctttgattcatgggtgtatgggt 10408257  T
Q  159 tt 160  Q
    ||    
T  10408256 tt 10408255  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 13995358 - 13995406
Alignment:
Q  64 gtgtttccttttattgatttagaatatagccctttgttaggtgatgttt 112  Q
    ||||||||||||| || ||| |||||||| |||||||||||||||||||    
T  13995358 gtgtttccttttactgtttttgaatatagtcctttgttaggtgatgttt 13995406  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 5994139 - 5994053
Alignment:
Q  75 tattgatttagaatatagccctttgttaggtgatgttttctattggttttttaga-ttctatctttgatgcacgcgtgtatgagttt 160  Q
    ||||||||| ||||||||| |||||||||| |  |||| |||| |||||||| || || | ||||||||||||| ||||||| ||||    
T  5994139 tattgatttcgaatatagctctttgttaggaggcgtttcctataggttttttggaattttttctttgatgcacgggtgtatgggttt 5994053  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 11139604 - 11139715
Alignment:
Q  53 ctttgttttttgtgtttccttttattgatttagaatatagccctttgttaggtgatgttttctattggttttttagattctatctttgatgcacgcgtgt 152  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||||||| |  | ||| || |  |||||||| ||| | |||||| |||||| |||     
T  11139604 ctttgtttttggtgtttccttttattgatttcgaatatagctctttgttagatagtatttcctttgagttttttacattttgtctttgctgcacgagtgc 11139703  T
Q  153 atgagtttacaa 164  Q
    ||||||||||||    
T  11139704 atgagtttacaa 11139715  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 15150395 - 15150314
Alignment:
Q  80 atttagaatatagccctttgttaggtgatgttttctattggttttttagattctatctttgatgcacgcgtgtatgagtttac 162  Q
    |||| |||||||||||||||||||||| |||||  | | | ||||||| ||| ||||||||||||||| ||| ||| ||||||    
T  15150395 atttcgaatatagccctttgttaggtggtgtttcatgtcg-ttttttacattttatctttgatgcacgagtgcatgggtttac 15150314  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14993547 - 14993500
Alignment:
Q  1 caacttttgtttatgttgttgtgaggagggttatctttgatttcggtg 48  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||||    
T  14993547 caacttttgtttatgttgttgtgaggaggtttgtctttgattttggtg 14993500  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27741689 - 27741731
Alignment:
Q  1 caacttttgtttatgttgttgtgaggagggttatctttgattt 43  Q
    ||||||||||||||||||||||| ||||| || ||||||||||    
T  27741689 caacttttgtttatgttgttgtgcggaggtttgtctttgattt 27741731  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 6989381 - 6989302
Alignment:
Q  45 ggtgctagctttgttttttgtgtttccttttattgatttagaatatagccctttgttaggtgatgttttctattggttttt 125  Q
    |||| ||||||||||||| |||||||  ||||||||||| | | |||||||||||||||| || |||| |||| |||||||    
T  6989381 ggtgttagctttgttttt-gtgtttctatttattgatttcggagatagccctttgttaggagacgtttcctataggttttt 6989302  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 11163642 - 11163695
Alignment:
Q  73 tttattgatttagaatatagccctttgttaggtgatgttttctattggtttttt 126  Q
    ||||||||||| | |||||||||||||||||| | ||||||||||  |||||||    
T  11163642 tttattgattttggatatagccctttgttaggaggtgttttctataagtttttt 11163695  T

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