View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5157-Insertion-1 (Length: 960)
Name: NF5157-Insertion-1
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5157-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 687
Target Start/End: Original strand, 9468376 - 9469043
Alignment:
| Q |
8 |
taaggggcagaaagagactaaaaatataatatatagaaaaagaatcaaatcactgaaggtgaatgacttacaaaaattattagagaaattatcaagaaag |
107 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9468376 |
taaggggcagaaagagactaaaaatatactatatagaaaaagaatcaaatcactgaaggtgaatgacttacaaaaa-----------attatcaagaaag |
9468464 |
T |
|
| Q |
108 |
atatagtgatcaatgattttgagaaagacacagtttttgataggatattatgacatgtttaattcatataaccggccccaattaatataataagacttgg |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9468465 |
atatagagatcaatgattttgagaaagacacagtttttgataggatattatgacatgtttaattcatataaccggccccaattaatataataagacttgg |
9468564 |
T |
|
| Q |
208 |
tccttgtagtttctcaattattatcgatttagatatgtatttggtatatgttggagatacttgttacacaatttgtgtagattctttaaggagagctatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9468565 |
tccttgtagtttctcaattattatcgatttagatatgtatttggtatatgttggagatacttgttacacaatttgtgtagattctttaaggagagctatt |
9468664 |
T |
|
| Q |
308 |
gatgagagataataaagtataggattaaataagtttttggttcaactcatatttcttgnnnnnnnnnnnnnnnnntgttggtttgcgaaatattttatgt |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9468665 |
gatgagagataataaagtataggattaaataagtttttggttcaactcatatttcttgaaaaaaaattcaaaaaatgttggtttgcgaaatattttatgt |
9468764 |
T |
|
| Q |
408 |
catgatttttagtttctccttttgaataaattcatttgtatcttttaaaagtttgaattatacgctggatcttcgaatatcaacaacgtgaaggtgagct |
507 |
Q |
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| T |
9468765 |
catgatttttagtttcttcttttaaataaattcatgtgtatcttttaaaattttgaattatagactggatcttcgaatatcaacaacgtgaaggtgagct |
9468864 |
T |
|
| Q |
508 |
attcatttttatctttatgataaattagaacaacacaatgtagtttccttgcacattatacaaatgttaattattataaaatgtgtgaaccactgcttca |
607 |
Q |
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| T |
9468865 |
attcatttttatctttatgataaattagaacaacacaatgtagtttccttgcacattatataaatgttaattattataaaatgtgtgaaccactgcttca |
9468964 |
T |
|
| Q |
608 |
tcaaatatgaacaccaaaaggaaatttctacaattttccttcaacaatgtaggtttgagagacctcaacaatgtagcttt |
687 |
Q |
| |
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| T |
9468965 |
tcaaatatgaacaccaaaaggaaatttctacaattttccttcaacaatgta-gtttgagagacctcaacaatgtagcttt |
9469043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 715 - 925
Target Start/End: Original strand, 9469043 - 9469249
Alignment:
| Q |
715 |
taccaaagcgttttcaaatcctactatttttatttgcaaaagaacttgcacgatgaagaactctactacgaagttttcaaacttcagtacacatataatt |
814 |
Q |
| |
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| T |
9469043 |
taccaaagcgttttcaaatcctactatttttattcgcaaaagaacttgcacgatgaagaactctactacgaagttttcaaacttcagtacacatataatt |
9469142 |
T |
|
| Q |
815 |
ttatgtacggtaaacacgcattaaagaaatcataatttgttttcaaatatgctttatacattaattttattatcatc-aaactttacgggccttggttat |
913 |
Q |
| |
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|||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||| |
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| T |
9469143 |
ttatgtac-gtaaacacgcattagag-aatcataa-ttgttttcaaatatgctttatacatt-attttattatcatcaaaactttacggg-ctttgttat |
9469237 |
T |
|
| Q |
914 |
attaaccaattt |
925 |
Q |
| |
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|||||||||||| |
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|
| T |
9469238 |
attaaccaattt |
9469249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 27637762 - 27637690
Alignment:
| Q |
87 |
ttagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttgataggatattatg |
159 |
Q |
| |
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||||||||| ||||||||| ||| ||||||||||||| || |||||||||| ||||||||||| ||| |||| |
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| T |
27637762 |
ttagagaaactatcaagaaggatctagtgatcaatgagttggagaaagacatggtttttgatagaatactatg |
27637690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 32043733 - 32043804
Alignment:
| Q |
79 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttgatag |
150 |
Q |
| |
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||||| ||||||||||| ||||||||| ||| || ||||||||| || |||||||||| ||||||||||| |
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| T |
32043733 |
aaaaactattagagaaactatcaagaaggatctaaagatcaatgagttggagaaagacatggtttttgatag |
32043804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 31636059 - 31635992
Alignment:
| Q |
79 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttg |
146 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||| ||||||||| || |||||| ||| ||||||| |
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|
| T |
31636059 |
aaaaactattagagaaactatcaagaaggatatagagatcaatgagttggagaaacacatggtttttg |
31635992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 5759134 - 5759063
Alignment:
| Q |
79 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttgatag |
150 |
Q |
| |
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||||| ||||||||||| || |||||| ||| ||| ||||||||| || |||||||||| ||||||||||| |
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| T |
5759134 |
aaaaactattagagaaactaccaagaaggatctagagatcaatgagttggagaaagacatggtttttgatag |
5759063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 27755884 - 27755827
Alignment:
| Q |
79 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagaca |
137 |
Q |
| |
|
||||| |||||||||||| ||| |||| ||||||| |||||||||||| |||||||||| |
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|
| T |
27755884 |
aaaaactattagagaaat-atctagaaggatatagagatcaatgatttggagaaagaca |
27755827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 26990356 - 26990414
Alignment:
| Q |
79 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagaca |
137 |
Q |
| |
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||||| ||||||||||| ||||||||| ||| ||| ||||||||| || |||||||||| |
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|
| T |
26990356 |
aaaaactattagagaaactatcaagaaggatctagagatcaatgagttggagaaagaca |
26990414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 19119562 - 19119505
Alignment:
| Q |
80 |
aaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagaca |
137 |
Q |
| |
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|||| ||||||||||| |||||||| ||| ||| ||||||||| ||||||||||||| |
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|
| T |
19119562 |
aaaactattagagaaactatcaagatggatctagagatcaatgagtttgagaaagaca |
19119505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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