View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5157-Insertion-2 (Length: 925)
Name: NF5157-Insertion-2
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5157-Insertion-2 |
 | |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 870; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 870; E-Value: 0
Query Start/End: Original strand, 8 - 925
Target Start/End: Complemental strand, 31995035 - 31994118
Alignment:
| Q |
8 |
ccctcaacagcattccatccgtcatatacttaacaatggttttctcggacgtgcaatcctcaaagcgtatggagtagccaacctcgtgtcctagcttaac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31995035 |
ccctcaacagcattccatccgtcatatacttaacaatggttttctcggatgtgcaatcctcaaagcgtatggagtagccaacctcgtgtcctagcttaac |
31994936 |
T |
|
| Q |
108 |
acccatttcttgagaaactcgggcagcaacactcatagcagcaacacgtcgtggctgagtacatgcaatcattcttccatcgttcgtataaccagcttcg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31994935 |
acccatttcttgagaaactcgggcagcaacactcatagcagcaacacgtcgtggctgagtacatgcaatcattcttccatccttcgtataaccagcttcg |
31994836 |
T |
|
| Q |
208 |
tgaagatattggggaatctgtgtagtttttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31994835 |
tgaagatattggggaatctgtgtagtttttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaa |
31994736 |
T |
|
| Q |
308 |
aaggatatataggtagctttttcctctcctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
31994735 |
aaggatatataggtagctttttcctctcctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacaatcaaa |
31994636 |
T |
|
| Q |
408 |
cttatctccacccatcactgactccttgataacatcaatctggtcctcaaacacaaactgataatcatcagagacatttgttttatttttcgaaccaaat |
507 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31994635 |
cttatctccacccatcactgattccttgataacatcaatctgatcctcaaacacaaactgataatcatcagagacatttgttttatttttcgaaccaaat |
31994536 |
T |
|
| Q |
508 |
ttcatggttgcctttctaatttgatgttcctcccaagcctcttctttgtcagcagtactgtaacgctgcgtagcaaccgaaaaccgcttttcctgattaa |
607 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31994535 |
ttcatcgttgcctttctaatttgatgttcctcccaagcctcttctttgtcagcagtactgtaacgctgtgtagcaaccgaaaaccgcttttcctgattaa |
31994436 |
T |
|
| Q |
608 |
cgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctctaagcctctcttcttcgaaactacatcgta |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31994435 |
cgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctctaagcctctcttcttcgaaactacatcgta |
31994336 |
T |
|
| Q |
708 |
tatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgttcatctagaatatactccttaagctgttgc |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
31994335 |
tatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgttcatctataatatactccttaaggtgttgc |
31994236 |
T |
|
| Q |
808 |
aatttcttttcctcccttcttttcaagtagtcataccttgaaaaatttctcaagttttgaatatcttcttcagctttagatctcttgaattccctctcaa |
907 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31994235 |
agtttcttttcctcccttcttttcaagtactcataccttgaaaaatttctcaaggtttgaatatcttcttcagctttagatctcttgaattccctctcaa |
31994136 |
T |
|
| Q |
908 |
cttgaactgctcctttac |
925 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31994135 |
cttgaactgctcctttac |
31994118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Complemental strand, 24009487 - 24008839
Alignment:
| Q |
8 |
ccctcaacagcattccatccgtcatatacttaacaatggttttctcggacgtgcaatcctcaaagcgtatggagtagccaacctcgtgtcctagcttaac |
107 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
24009487 |
ccctcaacaacattccatccgtcatatatttaacaatggtcttcttggacgtgcaatcctcaaagcgtatggagtaaccaacctcgtgtcctagtttaac |
24009388 |
T |
|
| Q |
108 |
acccatttcttgagaaactcgggcagcaacactcatagcagcaacacgtcgtggctgagtacatgcaatcattcttccatcgttcgtataaccagcttcg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
24009387 |
acccatttcttgagaaactcgggcagcaacactcatagcagcaacacgccgtggctgagtacatgcaatcatttttccatgcttcgtataaccagcttcg |
24009288 |
T |
|
| Q |
208 |
tgaagatattggggaatctgtgtagtttttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||| || |
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|
| T |
24009287 |
tgaagatattggggaatctgtgtagtttttccggaaccagtttcgccaacaatgacaagtacctggtgatcatgaacagcttggagaaatttatcccgaa |
24009188 |
T |
|
| Q |
308 |
aaggatatataggtagctttttcctctcctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcaaa |
407 |
Q |
| |
|
|| ||| | |||||| ||||||||||||||| || ||| || |||| || ||||| |||| ||||||||| |||||| ||||| | | |||||| |
|
|
| T |
24009187 |
cagcatagacaggtagttttttcctctcctcccgaattgcgtctaaagctgacctcttagctctagatttttctaatgcaacctctttctcataatcaaa |
24009088 |
T |
|
| Q |
408 |
cttatctccacccatcactgactccttgataacatcaatctggtcctcaaacacaaactgataatcatcagagacatttgttttatttttcgaaccaaat |
507 |
Q |
| |
|
|||| | ||| |||| || ||| ||||||| | ||||||||||||||||||||||||||| ||||||||| |||| | | |||||| ||||||||||||| |
|
|
| T |
24009087 |
cttaacaccatccattaccgacgccttgattaaatcaatctggtcctcaaacacaaactggtaatcatcacagacttgtcttttatctttcgaaccaaat |
24008988 |
T |
|
| Q |
508 |
ttcatggttgcctttctaatttgatgttcctcccaagcctcttctttgtcagcagt------actgtaacgctgcgtagcaaccgaaaaccgcttttcct |
601 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||| |||| || ||||||| |||||| | |
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|
| T |
24008987 |
ttcagtgttgcctttctaatttgatgttcctcccaagcctcttctttctcagcatttggatcattgtaacgctgcctagccacagaaaacctcttttctt |
24008888 |
T |
|
| Q |
602 |
gattaacgccgccactttgttgatgatcatcataagcttctggcattatatactc |
656 |
Q |
| |
|
||||||| || | ||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
24008887 |
gattaacaccagc------ttgctgatcatcataagcttctggtattctatactc |
24008839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 783
Target Start/End: Complemental strand, 24008817 - 24008721
Alignment:
| Q |
687 |
cttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgttcatct |
783 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||| ||| ||||| |||||| | | |||| | | ||||||||||||||||| || |||||| |
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|
| T |
24008817 |
cttcttcgcaagtacattgtatatatctttcttgtgcatgaaatcacggtattccacgtctgaacgcttcactccttcaaatagataatgctcatct |
24008721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 55 - 556
Target Start/End: Complemental strand, 15841448 - 15840947
Alignment:
| Q |
55 |
gacgtgcaatcctcaaagcgtatggagtagccaacctcgtgtcctagcttaacacccatttcttgagaaactcgggcagcaacactcatagcagcaacac |
154 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15841448 |
gacgtgcaatcctcaaatcgtatggagtaaccaacctcatgtcctagtttaacacccatttcttcagaaactcgggcagcaacactcatagcagcaacac |
15841349 |
T |
|
| Q |
155 |
gtcgtggctgagtacatgcaatcattcttccatcgttcgtataaccagcttcgtgaagatattggggaatctgtgtagtttttccagaaccagtttcacc |
254 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || | || |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15841348 |
gtcgtggctgagtacatgcaagcattcttccatgctttatgtatccagcttcatgaagatattgaggaatctgtgtagttttcccagaaccagtttcacc |
15841249 |
T |
|
| Q |
255 |
aacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagctttttcctctcctccttaagtgcctcataa |
354 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
15841248 |
aacaatcacaagtacttggtgatcatgaacagcttggagaaattcatcccgaaaaggatagataggtagctttttcctctcctcctgaagtgcctcgaaa |
15841149 |
T |
|
| Q |
355 |
gccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcaaacttatctccacccatcactgactccttgataacatcaatctggtcct |
454 |
Q |
| |
|
| ||||||||||| | |||||||| |||||||||||| | | ||||||||||| |||| |||| ||||| |||||||| ||||||||| |||| |
|
|
| T |
15841148 |
actgatctctttgcgctagattttttcaatgcaatctcttgtccataatcaaacttatgtccatccattactgatgccttgatacaatcaatctgctcct |
15841049 |
T |
|
| Q |
455 |
caaacacaaactgataatcatcagagacatttgttttatttttcgaaccaaatttcatggttgcctttctaatttgatgttcctcccaagcctcttcttt |
554 |
Q |
| |
|
||||||||||| |||||||||||||||| | | ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15841048 |
caaacacaaaccgataatcatcagagacttgtcgcttatttttcgaaccatatttcagctttgcctttctaatttgatgttcctcccaagcctcttcttt |
15840949 |
T |
|
| Q |
555 |
gt |
556 |
Q |
| |
|
|| |
|
|
| T |
15840948 |
gt |
15840947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 769
Target Start/End: Complemental strand, 15840915 - 15840738
Alignment:
| Q |
580 |
gcaaccgaaaaccgcttttcctgattaacgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctcta |
679 |
Q |
| |
|
||||| ||||| | |||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| | |||| | || | ||||| |
|
|
| T |
15840915 |
gcaacagaaaatctcttttcttgattaacgcc---actttgttgat---catcataagcttctggcattctatacgcattat------ccgcaccctcta |
15840828 |
T |
|
| Q |
680 |
agcctctcttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaata |
769 |
Q |
| |
|
| ||| | |||||| || ||| |||||||| |||||||||||| ||||||||| | |||| ||||||||| | |||||||||||||| |
|
|
| T |
15840827 |
accctattttcttcacaagtacctcgtatatctctttcttgtgcatgagatcacggcattcttcttttgaaagctcaactccttcaaata |
15840738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 7286553 - 7286458
Alignment:
| Q |
82 |
tagccaacctcgtgtcctagcttaacacccatttcttgagaaactcgggcagcaacactcatagcagcaacacgtcgtggctgagtacatgcaatc |
177 |
Q |
| |
|
||||| |||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7286553 |
tagcctacctcgtgtcctagtttaacacctaattcgtgagcaactcgagcagccacactcatagcagcaacacgacgtggctgagtacatgcaatc |
7286458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 7286064 - 7285994
Alignment:
| Q |
199 |
ccagcttcgtgaagatattggggaatctgtgtagtttttccagaaccagtttcaccaacaatgacaagtac |
269 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7286064 |
ccagcttcatgaagatattgaggaatttgtgtagtctttccagaaccggtttcaccaacaattacaagtac |
7285994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 7285795 - 7285726
Alignment:
| Q |
271 |
tggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagctttttcctctcctcct |
340 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||| | ||| ||| || |||| ||||||||||||||||| |
|
|
| T |
7285795 |
tggtggtcatgaacagcttggagcaattcatcccgataagtataaatgggtaactttttcctctcctcct |
7285726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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