View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5157-Insertion-4 (Length: 382)

Name: NF5157-Insertion-4
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5157-Insertion-4
NF5157-Insertion-4
[»] scaffold0006 (4 HSPs)
scaffold0006 (8-378)||(130872-131239)
scaffold0006 (117-162)||(194825-194870)
scaffold0006 (117-165)||(125322-125370)
scaffold0006 (285-314)||(125448-125477)
[»] chr1 (3 HSPs)
chr1 (8-378)||(13602215-13602582)
chr1 (133-167)||(13487572-13487606)
chr1 (344-378)||(23833634-23833668)
[»] chr6 (2 HSPs)
chr6 (101-165)||(21770132-21770196)
chr6 (285-314)||(21770274-21770303)
[»] chr7 (1 HSPs)
chr7 (338-375)||(4800047-4800084)
[»] scaffold0291 (1 HSPs)
scaffold0291 (285-324)||(17805-17845)


Alignment Details
Target: scaffold0006 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 130872 - 131239
Alignment:
Q  8 acctgaaccgttgggaagcatcaatctcctctacgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactacttccatgttcttttg 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  130872 acctgaaccgttgggaagcatcaatctcctctatgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactagttccatgttcttttg 130971  T
Q  108 tactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaataagaactcaacaacaggacaaatatagggaatgtttgtgattc 207  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  130972 tactttttcacattgtgcagaacctgctaatgataacttcctgctaaaagcgacaataagaactgaacaacaggacaaatatagggaatgtttgtgattc 131071  T
Q  208 ctttttgcacaagcattttcatgccattaaacaatattgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactc 307  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  131072 ctttttgcacaagcattttcatgccattaaac---attgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactc 131168  T
Q  308 tcacaaactatgagcacatataggttattagctgactaggtgcccttgctcaacacaaccttcaagtattc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  131169 tcacaaactatgagcacatataggttattagctgactaggtgcccttgctcaacacaaccttcaagtattc 131239  T

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Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 194825 - 194870
Alignment:
Q  117 acattgtgcagaaccttctaatgataacttcctgctaaaagtgaca 162  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||    
T  194825 acattgtacagaacctgctaatgataacttcctgctaaaagtgaca 194870  T

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Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 125322 - 125370
Alignment:
Q  117 acattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata 165  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  125322 acattgtacaaaacctactaatgataacttcctgctaaaagtgacaata 125370  T

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Target: scaffold0006; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 125448 - 125477
Alignment:
Q  285 atgattatacaacctatggactctcacaaa 314  Q
    ||||||||||||||||||||||||||||||    
T  125448 atgattatacaacctatggactctcacaaa 125477  T

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Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 13602215 - 13602582
Alignment:
Q  8 acctgaaccgttgggaagcatcaatctcctctacgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactacttccatgttcttttg 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13602215 acctgaaccgttgggaagcatcaatctcctctatgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactagttccatgttcttttg 13602314  T
Q  108 tactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaataagaactcaacaacaggacaaatatagggaatgtttgtgattc 207  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13602315 tactttttcacattgtgcagaacctgctaatgataacttcctgctaaaagcgacaataagaactgaacaacaggacaaatatagggaatgtttgtgattc 13602414  T
Q  208 ctttttgcacaagcattttcatgccattaaacaatattgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactc 307  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602415 ctttttgcacaagcattttcatgccattaaac---attgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactc 13602511  T
Q  308 tcacaaactatgagcacatataggttattagctgactaggtgcccttgctcaacacaaccttcaagtattc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602512 tcacaaactatgagcacatataggttattagctgactaggtgcccttgctcaacacaaccttcaagtattc 13602582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 13487572 - 13487606
Alignment:
Q  133 tctaatgataacttcctgctaaaagtgacaataag 167  Q
    |||||||||||||||||| ||||||||||||||||    
T  13487572 tctaatgataacttcctgttaaaagtgacaataag 13487606  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 23833668 - 23833634
Alignment:
Q  344 taggtgcccttgctcaacacaaccttcaagtattc 378  Q
    ||||| |||||||||||||||||||||||||||||    
T  23833668 taggttcccttgctcaacacaaccttcaagtattc 23833634  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 21770132 - 21770196
Alignment:
Q  101 tcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata 165  Q
    |||||||||| || | ||||||| |||||||| ||||||||||||||||| ||| ||||| ||||    
T  21770132 tcttttgtacgtttttacattgtacagaacctgctaatgataacttcctggtaatagtgagaata 21770196  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 21770274 - 21770303
Alignment:
Q  285 atgattatacaacctatggactctcacaaa 314  Q
    ||||||||||||||||||||||||||||||    
T  21770274 atgattatacaacctatggactctcacaaa 21770303  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 4800084 - 4800047
Alignment:
Q  338 gctgactaggtgcccttgctcaacacaaccttcaagta 375  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  4800084 gctgattaggttcccttgctcaacacaaccttcaagta 4800047  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 17845 - 17805
Alignment:
Q  285 atgattatacaacctatggactctc-acaaactatgagcac 324  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  17845 atgattatacaacctatggactgtcaacaaactatgagcac 17805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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