View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5157-Insertion-7 (Length: 180)
Name: NF5157-Insertion-7
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5157-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 2e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 11911168 - 11911336
Alignment:
| Q |
8 |
taaactctggttatgctgattctctactaccgtgacagtgattttttaacagaataatgttcatgtgcattcaagccgtaagtctcaagccagtcaaaga |
107 |
Q |
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| T |
11911168 |
taaactctggttatgctgattctctactaccgtgacagtgatttttttatagaataatgttcatgtgcattcaagccataagtctcaacccagtcaaaga |
11911267 |
T |
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| Q |
108 |
ctttgggttaaggaagcatctccgaaactaagatgacaatgaaattgttaagaagtaggagatcaagaa |
176 |
Q |
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| T |
11911268 |
ctttgggttaaggaagcatctccgaaactaagatgacaatgaaattgttaagaagtaggagatcaagaa |
11911336 |
T |
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Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 15514164 - 15514334
Alignment:
| Q |
8 |
taaactctggttatgctgattctctactaccgtgacagtgattttttaacagaataatgttcatgtgcattcaagccgtaagtctcaagccagtcaaaga |
107 |
Q |
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||||||| ||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15514164 |
taaactccggttatgctgattctctactaccatg-cagtgattttttatg-gaatagtgttcatgtgcattcaagccgtaagtctcaactcagtcaaagg |
15514261 |
T |
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| Q |
108 |
ctttgggttaaggaagcatctccgaaactaagatgacaatgaaattgttaagaagtaggagatcaagaactgc |
180 |
Q |
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| T |
15514262 |
ctttgggttaaggaagcatctccgaaaataagatgacaatgccattgttaagaagtaggagatcaagaactgc |
15514334 |
T |
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