View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5157_high_2 (Length: 377)
Name: NF5157_high_2
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5157_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 37969420 - 37969083
Alignment:
| Q |
18 |
ttatttggattcttagccttcaaataaatttcataatgtggtggcctagtgacgttttttacctcaaagcgggtaatagtaaatgtgggtccctctgggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969420 |
ttatttggattcttagccttcaaataaatttcataatgtggtggcctagtaacgttttttacctcaaagcgggtaatagtaaatgtgggtccctctgggt |
37969321 |
T |
|
| Q |
118 |
tgaaaacaaagaacaatgtggctaatgttattccaacaacggcaacgattgtaacaaggattaaaacaatggtgagcaagaatcgagggcaacaacaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969320 |
tgaaaacaaagaacaatgtggctaatgttattccaacaacagcaacgattgtaacaaggattaaaacaatggtgagcaagaatcgagggcaacaacaacc |
37969221 |
T |
|
| Q |
218 |
acgttgnnnnnnnnnnnncttatccttggtagtattacgataactttcaacgatgaatgcattttcacttggtggaacgcggtagacttgatcctttgga |
317 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969220 |
acgttgttttttctttttcttatcattggtagtattgcgataactttcaacgatgaatgcattttcacttggtggaacgcggtagacttgatcctttgga |
37969121 |
T |
|
| Q |
318 |
aattgaacgatgtacatattgtcatggtgggcgcggcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969120 |
aattgaacgatgtacatattgtcatggtgggcgcggcc |
37969083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University