View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5157_high_7 (Length: 243)
Name: NF5157_high_7
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5157_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 24482467 - 24482316
Alignment:
| Q |
11 |
catcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtcc |
110 |
Q |
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| T |
24482467 |
catcatcatcggtcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagactacaatgagacgtacacactccaagcgtcc |
24482368 |
T |
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| Q |
111 |
atgtcatgaacctgcagcttcctcgttcaaccatgcaactcatttctcccat |
162 |
Q |
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| T |
24482367 |
atgtcatgaacctgcagcttcctcgttcaaccatgcaactcatttctcccat |
24482316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 14150458 - 14150673
Alignment:
| Q |
11 |
catcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtcc |
110 |
Q |
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| T |
14150458 |
catcatcatcggtcaacaaggaggattttgtgctccttgaaagcagtagttcacctgctcatgaaaagaccacaatgagacgtacacgcaccaagcgtcc |
14150557 |
T |
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| Q |
111 |
atgtcatg-aacctgcag-cttcctcgttcaaccatgcaactcatttctccca--ttctctttcataggggagaatatgcagaatagtattatctacaat |
206 |
Q |
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| T |
14150558 |
acatcttgcaaccttcagcccacctcgttcaaccatgcaacccatttctcccattttctcctttgtagaagagaatatgcagaataatattatctccaat |
14150657 |
T |
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| Q |
207 |
aaggcggtgtcttcag |
222 |
Q |
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| T |
14150658 |
aaggcggtgtcttcag |
14150673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 14151216 - 14151027
Alignment:
| Q |
11 |
catcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtcc |
110 |
Q |
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|||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||| |
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| T |
14151216 |
catcatcatcagtctacaaggaggattttgtgctccatgaaagcagtagttcacccactcataaaaagaccacaatgatacgtacacgctccaagcgtcc |
14151117 |
T |
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| Q |
111 |
atgtcatg-aacctgcagcttcctcgttcaaccatgcaactcatttctcccatt--ctctttcataggggagaatatgcagaatagtatta |
198 |
Q |
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| T |
14151116 |
acgtcctgcaagcttcagc-ccctcgttcaaccatgcaactcatttctccaatttcctcttttgtaggggagaatatgcagaatagtatta |
14151027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 52421885 - 52422077
Alignment:
| Q |
11 |
catcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtcc |
110 |
Q |
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|||||||||| |||||||||||||||| ||||||| | |||||| ||||||||||||| ||| ||||||| || |||||||||||| |||||||||||| |
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| T |
52421885 |
catcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgagacgtacacgctccaagcgtcc |
52421984 |
T |
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| Q |
111 |
atgtcatg-aacctgcagcttcc-tcgttcaaccatgcaactcatttctccca--ttctctttcataggggagaatatgcagaatagtattat |
199 |
Q |
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| T |
52421985 |
acgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgtaggggagaatatgcaggatagtgttat |
52422077 |
T |
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