View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5157_low_1 (Length: 567)
Name: NF5157_low_1
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5157_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 11911173 - 11910694
Alignment:
| Q |
18 |
agtttaacgagagaatttcagcgagtgcctttcgtttcctttacatataccatcatcctattcattaatattattttcttggcggtgtaggatcacattt |
117 |
Q |
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| T |
11911173 |
agtttaacgagagaatttcagcgagtgcctttcgtttcctttacatataccatcatcctattcattaatattattttcttggcggtgtaggatcacattt |
11911074 |
T |
|
| Q |
118 |
ccttttttcggaacgaaactacgttctttggtggttgcacattttatttcataactaaatagttctctccaaaaagattttatatgacctcttctttctg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11911073 |
ccttttttcggaacgaaactacgttctttggtggttgcacattttgttt-ataactaaatagttctctccaaaaagattttatatgacctcttctttctg |
11910975 |
T |
|
| Q |
218 |
atctaattatctgtgtattacattttaaagggtattgttttatttaattatatttgacttttaatatcaaggcctctatgattataactgtcagtgctat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11910974 |
atctaattatctgtgtattacattttaaagggtattgttatatttaattatatttgacttttaatatcaaggcctctatgattataactgtcagtgctat |
11910875 |
T |
|
| Q |
318 |
tgttttagcaaattgagtgatttcggagttatgtatttaaaatgtggaatatgtcacagtaacccaattcataaatatcttatgctgatgtattttctgt |
417 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11910874 |
tgttttagcaaattgagtgatttcggagttatgcatttaaaatgtggaatatgtcacagtaacccaattcataaatatcttatgctgatgtattttttgt |
11910775 |
T |
|
| Q |
418 |
acgtacgttgtgttccagtaattgtgttgtagcgttgcagcattccagaaatcgtgttccagtcgtccaccgtcgttctctc |
499 |
Q |
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| T |
11910774 |
gcgtacgttgtgttccagtaatcgtgttgtagcattgcagcattccagaaatcgtgttcca-tcgtccaccgtcgttctctc |
11910694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 512 - 557
Target Start/End: Complemental strand, 11910697 - 11910652
Alignment:
| Q |
512 |
tctccgatcgatgtccatcttcctctctgattacaacgatcctatg |
557 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
11910697 |
tctccgatcgatatcgatcttcctctctgattacaacgatcctatg |
11910652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 15514169 - 15513734
Alignment:
| Q |
18 |
agtttaacgagagaatttcagcgagtgcctttcgtttcctttacatataccatcatcctattcattaatattattttcttggcggtgtaggatcacattt |
117 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
15514169 |
agtttaaagagagaattccagcgagtgcctttcgtttcctttacatataccaccatcctattcattaatagtattttcttggtggtgtaggatcacattt |
15514070 |
T |
|
| Q |
118 |
ccttttttcggaacgaaactacgttct---ttggtggttgcacattttatttcataactaaatagttctctccaaaaagattttatatgacctcttcttt |
214 |
Q |
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||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
15514069 |
ccttttttccgaacagaactacgttctttgttggtggttgcacattttatttcataactaaatagttctctccatgaagattttatatgacctctttgtt |
15513970 |
T |
|
| Q |
215 |
ctgatctaattatctgtgtattacattttaaagg----gtattgttttatttaattatatttgacttttaatatcaaggcctctatgattataactgtca |
310 |
Q |
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| ||||||||||||| ||||| |||||||| | | |||| ||||||||||||||||||||| |||||| || | ||||||| ||| | |
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| T |
15513969 |
tttctctaattatctgtatattatattttaaatgaacaccactgtt-------attatatttgacttttaatatgaaggccactgttattataattgtaa |
15513877 |
T |
|
| Q |
311 |
gtgctattgttttagcaaattgagtgatttcggagttatgtatttaaaatgtggaatatgtcacagtaacccaattcataaatatcttatgctgatgtat |
410 |
Q |
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| |||||||||||||||||||||||| |||| | | | ||||||||| ||| || |||||||| || ||||||||||||||||||||||| |||||| |
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| T |
15513876 |
gcgctattgttttagcaaattgagtggtttcagtttaacgtatttaaactgtcga--atgtcacaccaatccaattcataaatatcttatgctaatgtat |
15513779 |
T |
|
| Q |
411 |
tttctgtacgtacgttgtgttccagtaattgtgttgtagcgttgc |
455 |
Q |
| |
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||||||| | ||||||||||||||||||| ||| || |||||||| |
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| T |
15513778 |
tttctgtgcatacgttgtgttccagtaatcgtgctgcagcgttgc |
15513734 |
T |
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