View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5157_low_3 (Length: 286)
Name: NF5157_low_3
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5157_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 43559044 - 43559290
Alignment:
| Q |
20 |
gccccaacaacaaatgttgggagacaatgttggagctacaacattgtactggtgatattgttacatttttccttaatggtcagacacatcttggatctgg |
119 |
Q |
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| T |
43559044 |
gccccaacaacaaatgttgggagacaatgttggagcttcaacattgtactggtgatattgttacatttttccttaatggtcagacacatcttggatctgg |
43559143 |
T |
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| Q |
120 |
ttgttgtaatgctcttcttactatagctcaagaatgttggggaaatttgcttacctcgttgggtctaacggtagaagaagctgaaattctacgtggcttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43559144 |
ttgttgtaatgctcttcttactatagctcaagaatgttggggaaatttgcttacctcgttgggtctcacggtagaagaagctgaaattctacgtggcttt |
43559243 |
T |
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| Q |
220 |
tgtgctcgtgttgcctctgttaacaattctcttttaccatctatcac |
266 |
Q |
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| T |
43559244 |
tgtgctcgtgttgcctctgttaacaattctcttttaccatctatcac |
43559290 |
T |
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