View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5157_low_5 (Length: 248)

Name: NF5157_low_5
Description: NF5157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5157_low_5
NF5157_low_5
[»] chr4 (38 HSPs)
chr4 (1-248)||(43743086-43743329)
chr4 (1-124)||(6218301-6218423)
chr4 (1-127)||(28245623-28245748)
chr4 (2-101)||(35819015-35819114)
chr4 (8-224)||(35788764-35788980)
chr4 (9-129)||(35796837-35796956)
chr4 (1-111)||(50543442-50543554)
chr4 (4-112)||(52559668-52559777)
chr4 (14-130)||(5398569-5398684)
chr4 (1-151)||(7926425-7926569)
chr4 (8-217)||(12005474-12005689)
chr4 (1-127)||(27634178-27634303)
chr4 (1-174)||(40717255-40717428)
chr4 (1-109)||(35645279-35645387)
chr4 (1-109)||(35645568-35645676)
chr4 (60-127)||(21750139-21750205)
chr4 (13-127)||(6778540-6778653)
chr4 (1-106)||(4645739-4645844)
chr4 (1-90)||(22231206-22231295)
chr4 (8-117)||(25324140-25324249)
chr4 (14-131)||(33107981-33108098)
chr4 (2-130)||(5398305-5398431)
chr4 (15-124)||(13495557-13495664)
chr4 (1-131)||(30530019-30530149)
chr4 (28-77)||(42662587-42662636)
chr4 (29-117)||(1215880-1215968)
chr4 (8-111)||(11036623-11036726)
chr4 (13-124)||(18981392-18981503)
chr4 (1-38)||(13555427-13555464)
chr4 (22-71)||(26549542-26549591)
chr4 (58-123)||(31945076-31945141)
chr4 (16-71)||(53698912-53698967)
chr4 (95-124)||(4464485-4464514)
chr4 (10-71)||(40716537-40716598)
chr4 (150-218)||(53814933-53815002)
chr4 (48-100)||(1215983-1216035)
chr4 (2-46)||(9908773-9908817)
chr4 (23-123)||(22822470-22822570)
[»] chr3 (26 HSPs)
chr3 (8-131)||(13574777-13574900)
chr3 (2-127)||(34992704-34992828)
chr3 (8-111)||(31317336-31317438)
chr3 (1-127)||(35038291-35038415)
chr3 (2-125)||(4155422-4155544)
chr3 (1-111)||(20327726-20327836)
chr3 (8-101)||(19954339-19954432)
chr3 (8-125)||(25417152-25417269)
chr3 (58-127)||(39683365-39683433)
chr3 (8-111)||(16239696-16239799)
chr3 (8-125)||(26753385-26753501)
chr3 (8-77)||(37246764-37246833)
chr3 (1-151)||(45828116-45828257)
chr3 (11-111)||(20303176-20303276)
chr3 (55-111)||(29215701-29215756)
chr3 (1-100)||(39269171-39269270)
chr3 (1-77)||(20303296-20303372)
chr3 (150-201)||(38791471-38791523)
chr3 (1-85)||(46139359-46139443)
chr3 (8-38)||(49629709-49629739)
chr3 (8-69)||(11659600-11659661)
chr3 (26-79)||(52724130-52724183)
chr3 (55-123)||(272507-272575)
chr3 (185-225)||(18757889-18757929)
chr3 (59-111)||(22729648-22729700)
chr3 (95-127)||(46794197-46794229)
[»] chr2 (31 HSPs)
chr2 (2-127)||(15124645-15124769)
chr2 (8-223)||(5711438-5711654)
chr2 (1-129)||(2029866-2029993)
chr2 (1-127)||(16419364-16419489)
chr2 (1-127)||(37812365-37812490)
chr2 (1-129)||(14466270-14466397)
chr2 (11-129)||(17525194-17525311)
chr2 (8-111)||(16533416-16533519)
chr2 (50-131)||(41069253-41069334)
chr2 (1-124)||(18607109-18607231)
chr2 (2-111)||(44404038-44404148)
chr2 (1-93)||(93249-93341)
chr2 (8-127)||(33606151-33606269)
chr2 (8-127)||(40379306-40379424)
chr2 (105-225)||(19570971-19571093)
chr2 (25-123)||(36063267-36063365)
chr2 (8-201)||(40149024-40149216)
chr2 (1-77)||(34893522-34893598)
chr2 (1-123)||(42895344-42895467)
chr2 (21-127)||(21383386-21383492)
chr2 (49-115)||(33381061-33381127)
chr2 (25-77)||(15461095-15461147)
chr2 (8-120)||(19110347-19110458)
chr2 (105-151)||(43819444-43819490)
chr2 (2-77)||(17719498-17719573)
chr2 (22-88)||(7748113-7748179)
chr2 (8-127)||(24395967-24396087)
chr2 (20-126)||(31001845-31001951)
chr2 (58-131)||(37828370-37828442)
chr2 (95-127)||(10523208-10523240)
chr2 (58-118)||(13250127-13250187)
[»] chr5 (32 HSPs)
chr5 (8-225)||(41666754-41666972)
chr5 (8-127)||(24269967-24270085)
chr5 (8-127)||(24346598-24346716)
chr5 (1-127)||(95363-95488)
chr5 (15-125)||(15590049-15590158)
chr5 (8-127)||(9368699-9368817)
chr5 (8-111)||(18333577-18333679)
chr5 (8-111)||(32908830-32908932)
chr5 (3-127)||(8081211-8081334)
chr5 (3-111)||(25258178-25258286)
chr5 (3-111)||(25321968-25322076)
chr5 (1-111)||(24531696-24531806)
chr5 (16-125)||(26137208-26137316)
chr5 (10-111)||(33337350-33337451)
chr5 (8-85)||(13700728-13700805)
chr5 (58-127)||(30770146-30770214)
chr5 (8-101)||(43117751-43117844)
chr5 (14-114)||(6415782-6415882)
chr5 (8-124)||(6919294-6919409)
chr5 (8-124)||(15480426-15480541)
chr5 (8-111)||(17150345-17150448)
chr5 (23-85)||(16704621-16704683)
chr5 (23-111)||(38731715-38731803)
chr5 (21-125)||(17352533-17352636)
chr5 (23-125)||(18885346-18885447)
chr5 (58-111)||(11896027-11896080)
chr5 (1-77)||(11896302-11896378)
chr5 (58-223)||(20510641-20510807)
chr5 (150-223)||(25258300-25258374)
chr5 (150-223)||(25322090-25322164)
chr5 (8-77)||(6413568-6413637)
chr5 (22-79)||(7133854-7133911)
[»] chr7 (36 HSPs)
chr7 (1-127)||(31892249-31892374)
chr7 (1-129)||(36277086-36277213)
chr7 (1-129)||(1596690-1596817)
chr7 (1-129)||(21861391-21861518)
chr7 (1-129)||(29469702-29469829)
chr7 (25-127)||(3519822-3519923)
chr7 (1-127)||(33834288-33834413)
chr7 (1-101)||(3519926-3520026)
chr7 (16-127)||(40746130-40746239)
chr7 (1-111)||(25620233-25620343)
chr7 (2-127)||(22574699-22574823)
chr7 (8-131)||(22339460-22339582)
chr7 (25-217)||(6001440-6001633)
chr7 (25-111)||(35308353-35308439)
chr7 (8-93)||(44874473-44874558)
chr7 (11-127)||(33996176-33996291)
chr7 (8-111)||(31485536-31485639)
chr7 (2-125)||(4886427-4886548)
chr7 (8-111)||(48661431-48661535)
chr7 (59-127)||(24612714-24612784)
chr7 (34-124)||(35308246-35308335)
chr7 (11-124)||(2376311-2376423)
chr7 (3-111)||(2315138-2315246)
chr7 (16-71)||(26561990-26562045)
chr7 (1-38)||(9689050-9689087)
chr7 (16-64)||(2938080-2938128)
chr7 (8-124)||(4507036-4507149)
chr7 (58-108)||(5871691-5871741)
chr7 (8-77)||(28080768-28080838)
chr7 (16-126)||(30727216-30727326)
chr7 (111-223)||(36277225-36277339)
chr7 (150-223)||(43688159-43688232)
chr7 (8-124)||(1936212-1936327)
chr7 (59-111)||(14540853-14540905)
chr7 (25-77)||(20305415-20305467)
chr7 (8-48)||(26239855-26239895)
[»] chr6 (24 HSPs)
chr6 (1-127)||(17147757-17147882)
chr6 (8-223)||(4868576-4868792)
chr6 (1-129)||(13353298-13353425)
chr6 (1-129)||(33796423-33796550)
chr6 (1-127)||(12330041-12330166)
chr6 (25-201)||(20830634-20830813)
chr6 (8-127)||(6542805-6542923)
chr6 (28-131)||(6311939-6312041)
chr6 (22-129)||(6400715-6400821)
chr6 (8-124)||(24554221-24554334)
chr6 (21-125)||(34345514-34345617)
chr6 (3-77)||(7638759-7638833)
chr6 (16-127)||(9705133-9705241)
chr6 (58-124)||(10313899-10313964)
chr6 (9-127)||(33494644-33494761)
chr6 (11-112)||(32290835-32290936)
chr6 (8-115)||(5608993-5609100)
chr6 (1-124)||(31961040-31961162)
chr6 (1-127)||(3680109-3680233)
chr6 (8-78)||(6237617-6237687)
chr6 (49-151)||(30392612-30392713)
chr6 (11-127)||(30256685-30256800)
chr6 (8-71)||(2736318-2736381)
chr6 (3-101)||(33631692-33631790)
[»] chr8 (41 HSPs)
chr8 (1-123)||(3157425-3157546)
chr8 (14-127)||(3157106-3157218)
chr8 (1-129)||(11232289-11232416)
chr8 (1-130)||(8084224-8084352)
chr8 (8-125)||(20094659-20094775)
chr8 (1-179)||(37868392-37868570)
chr8 (1-151)||(10615491-10615641)
chr8 (58-179)||(37867876-37867998)
chr8 (1-127)||(39052791-39052916)
chr8 (1-106)||(18004211-18004316)
chr8 (8-111)||(20301365-20301468)
chr8 (8-111)||(21087997-21088100)
chr8 (1-124)||(39052637-39052759)
chr8 (48-179)||(37868116-37868248)
chr8 (8-111)||(41790762-41790865)
chr8 (3-101)||(35682903-35683001)
chr8 (8-180)||(8716219-8716392)
chr8 (9-106)||(31197719-31197816)
chr8 (21-100)||(5675944-5676023)
chr8 (1-124)||(5932049-5932171)
chr8 (21-127)||(5675831-5675936)
chr8 (62-151)||(10615012-10615101)
chr8 (8-198)||(12688176-12688367)
chr8 (2-77)||(15042795-15042870)
chr8 (55-126)||(31079660-31079731)
chr8 (21-127)||(39960074-39960178)
chr8 (58-131)||(8849336-8849409)
chr8 (8-111)||(7669523-7669625)
chr8 (1-88)||(10614839-10614926)
chr8 (8-85)||(8466626-8466703)
chr8 (57-103)||(8715798-8715844)
chr8 (16-66)||(34842962-34843012)
chr8 (106-179)||(37868627-37868701)
chr8 (8-77)||(7289346-7289415)
chr8 (150-214)||(16050040-16050105)
chr8 (58-123)||(29006010-29006074)
chr8 (16-69)||(29907865-29907918)
chr8 (8-179)||(31079382-31079555)
chr8 (16-127)||(422314-422425)
chr8 (59-111)||(5589852-5589904)
chr8 (21-69)||(6463076-6463124)
[»] scaffold0519 (1 HSPs)
scaffold0519 (1-129)||(2013-2140)
[»] chr1 (36 HSPs)
chr1 (8-151)||(12376510-12376652)
chr1 (8-223)||(35772133-35772349)
chr1 (1-223)||(25145484-25145707)
chr1 (1-223)||(26177005-26177228)
chr1 (1-127)||(25713255-25713380)
chr1 (1-129)||(4112635-4112762)
chr1 (21-124)||(12325396-12325498)
chr1 (11-131)||(34076521-34076641)
chr1 (8-111)||(369735-369839)
chr1 (1-127)||(16163030-16163154)
chr1 (1-127)||(38668222-38668347)
chr1 (8-112)||(17412436-17412540)
chr1 (8-127)||(2859489-2859607)
chr1 (1-127)||(4112868-4112993)
chr1 (8-101)||(4098290-4098383)
chr1 (58-127)||(8870786-8870854)
chr1 (7-124)||(34264586-34264702)
chr1 (12-127)||(39348216-39348328)
chr1 (8-128)||(7307825-7307944)
chr1 (1-125)||(27413444-27413567)
chr1 (2-127)||(38733249-38733369)
chr1 (1-84)||(51460346-51460429)
chr1 (8-111)||(52961451-52961554)
chr1 (59-201)||(9146575-9146718)
chr1 (1-76)||(30369932-30370007)
chr1 (33-123)||(8223412-8223502)
chr1 (3-77)||(9146774-9146848)
chr1 (11-85)||(39100453-39100527)
chr1 (58-111)||(7653395-7653448)
chr1 (58-127)||(51459927-51459994)
chr1 (8-123)||(17208658-17208773)
chr1 (10-77)||(26229672-26229739)
chr1 (8-111)||(31496248-31496351)
chr1 (8-123)||(52676374-52676489)
chr1 (11-101)||(26173343-26173433)
chr1 (8-85)||(33156838-33156915)
[»] scaffold0692 (1 HSPs)
scaffold0692 (1-109)||(5633-5741)
[»] scaffold0366 (2 HSPs)
scaffold0366 (2-111)||(14502-14612)
scaffold0366 (2-111)||(10836-10946)
[»] scaffold0729 (1 HSPs)
scaffold0729 (13-127)||(2603-2716)
[»] scaffold0459 (1 HSPs)
scaffold0459 (2-111)||(13195-13305)
[»] scaffold0092 (1 HSPs)
scaffold0092 (11-111)||(5762-5862)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-129)||(81939-82065)
[»] scaffold0083 (1 HSPs)
scaffold0083 (3-112)||(51372-51481)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-131)||(41063-41193)
[»] scaffold0400 (1 HSPs)
scaffold0400 (1-70)||(3942-4011)
[»] scaffold0365 (1 HSPs)
scaffold0365 (1-70)||(4586-4655)
[»] scaffold0542 (1 HSPs)
scaffold0542 (8-77)||(5733-5802)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-85)||(14400-14484)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 43743086 - 43743329
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    ||||||||||||||||| ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43743086 cctctcaaagatccatttgaccacctgctatcaggttt-----atcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 43743180  T
Q  101 gagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtgttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtgt 199  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  43743181 gagtgtgttaaagagtctcacatcggacaaacgataacctgaacatgtgttattagtgaggacaatccttacctcacaaatcggttttgtggggttgtgt 43743280  T
Q  200 taaacccaaacacgatttccaagagtgggagtacaatattcttcgacat 248  Q
    || ||||||||||||||||||||||||| | ||||||||| ||||||||    
T  43743281 tagacccaaacacgatttccaagagtggaactacaatattattcgacat 43743329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 6218301 - 6218423
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| ||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| || ||||||| ||||||| ||||||| ||||||    
T  6218301 cctctccaagatccattggatcacctactatcaggtttccgctatcaggtcacccatcatttatgtacaagaaccaagcccaatagtgctggtcgtgagg 6218400  T
Q  101 gagtgtgttaaagagtctcacatc 124  Q
    | ||||||| ||||||||||||||    
T  6218401 gggtgtgtt-aagagtctcacatc 6218423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 28245748 - 28245623
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||||||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| ||||||| |||| |    
T  28245748 cctctccaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgatg 28245649  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| |||||||||||||||||    
T  28245648 gggtgtgtt-aagagtctcacatcgga 28245623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 35819114 - 35819015
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    ||||| |||||||||||| |||||||||||||||||| || |||| |||||| || |||||||||||||||||||| ||||||| |||||||||||||||    
T  35819114 ctctctaagatccattgggccacctgctatcaggtttccgctatcgggtcacccaccatttatgtccacgaaccaagcccaatagtgctggttgtgaggg 35819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 35788764 - 35788980
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||| |||| |||||||||||||||||| |||||||||| ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| | |||    
T  35788764 aagatccgttgggccacctgctatcaggtttccgttatcaggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggg-gggtg 35788862  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtgttaaacc 205  Q
    || ||||||| ||||||||| | |  ||  |||||  ||||| |||| |||| || ||||||| | |||||||  | | |||||||||||||||||  ||    
T  35788863 tt-aagagtcccacatcggatagaacatggcctgacaatgtgtttataagtgggggcaatcctcatctcacaagccggttttgtggggttgtgttaggcc 35788961  T
Q  206 caaacacgatttccaagag 224  Q
    ||| ||||||||| |||||    
T  35788962 caaccacgatttctaagag 35788980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 35796956 - 35796837
Alignment:
Q  9 agatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgt 108  Q
    ||||||||||||| |||||||||||||||| || |||| || ||| || ||||||| |||||||||||| ||||||| ||||||| ||||||| ||||||    
T  35796956 agatccattggactacctgctatcaggtttccgctatcgggccacccaccatttatctccacgaaccaagcccaatagtgctggtcgtgagggggtgtgt 35796857  T
Q  109 taaagagtctcacatcggaca 129  Q
    | ||||||  |||||||||||    
T  35796856 t-aagagttccacatcggaca 35796837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 50543554 - 50543442
Alignment:
Q  1 cctctcaaagatccat--tggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtga 98  Q
    |||||| |||||||||  | |||||||||||||||||||| ||||||| || ||| || |||||||||||||||||||| ||||||| || |||| ||||    
T  50543554 cctctccaagatccatatttgaccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtga 50543455  T
Q  99 gggagtgtgttaa 111  Q
    ||| |||||||||    
T  50543454 gggggtgtgttaa 50543442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 52559668 - 52559777
Alignment:
Q  4 ctcaaagatccatt-ggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggga 102  Q
    ||||||||||| || || ||||||||||||| ||||  |||||| || ||| || |||||||||||||||||||| ||||||| |||||||||||||||     
T  52559668 ctcaaagatccgtttgggccacctgctatcaagtttatgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggttgtgagggg 52559767  T
Q  103 gtgtgttaaa 112  Q
    ||||||||||    
T  52559768 gtgtgttaaa 52559777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 5398684 - 5398569
Alignment:
Q  14 cattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaag 113  Q
    |||||| |||||||||||||||||| || |||| |  ||| || |||||||||||||||||||| || |||| ||||||| ||||||| ||||||| |||    
T  5398684 cattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagccaaatagtgctggtcgtgagggggtgtgtt-aag 5398586  T
Q  114 agtctcacatcggacaa 130  Q
    |||| ||||||||||||    
T  5398585 agtcccacatcggacaa 5398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 7926425 - 7926569
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||||||||||||| |  |||  || ||| ||||||      ||||||||||| |||||||||| | || ||||||    
T  7926425 cctctccaagatccattgggccacctgctatcaggtttccactatagggccacccatcat------ccacgaaccaagcccaataatggtagtcgtgagg 7926518  T
Q  101 gagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtgtt 151  Q
    | ||||||||||||||| |||||||||||||  ||  ||||||||||||||    
T  7926519 gggtgtgttaaagagtcccacatcggacaaaagatggcctgaacatgtgtt 7926569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 12005689 - 12005474
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaac---caaacccaataatgctggttgtga-gggag 103  Q
    |||||||| |||  ||||| ||||||||||| || ||||||| ||| || |||||||||| ||||||   ||| ||||||| ||||||| |||| ||| |    
T  12005689 aagatccactgggtcacctactatcaggtttccgctatcaggccacacaccatttatgtcaacgaaccaacaagcccaatagtgctggtcgtgaggggtg 12005590  T
Q  104 tgtgttaaagagtctcacatcggacaaacaataacctgaacatgtgtt-attagtgaggacaatccttacctcacaaatcag-tttgtggggttgtgtta 201  Q
    |||||||||||||| |||||||||||||  ||  | ||||||| |||| || |||| || ||||||| |||||||||  | | |||||| ||||||||||    
T  12005589 tgtgttaaagagtcccacatcggacaaaatatggcatgaacatttgttaataagtgggggcaatcctcacctcacaagccggttttgtgaggttgtgtta 12005490  T
Q  202 aacccaaacacgattt 217  Q
     ||||||  |||||||    
T  12005489 gacccaacaacgattt 12005474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 27634303 - 27634178
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| ||||||||||||||||| |||||||||||||  | |||| |  ||| ||   |||||||||||||||||| ||||||| ||||||| ||||||    
T  27634303 cctctccaagatccattggaccacttgctatcaggtttctgctatcggaccacccactgtttatgtccacgaaccaagcccaatagtgctggtcgtgagg 27634204  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | | ||||| ||||||| |||||||||    
T  27634203 gggggtgtt-aagagtcccacatcgga 27634178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 40717428 - 40717255
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| || ||||||||| |||||||| ||||||||| || |||| |  ||| || ||||||||||||| |||||| || |||| ||||||| ||||||    
T  40717428 cctctccaatatccattgggccacctgccatcaggtttccgctatcggaccacccaccatttatgtccacaaaccaagcctaatagtgctggtcgtgagg 40717329  T
Q  101 gagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacct 174  Q
    | ||||||| ||||||| |||||| |||| |  || ||||||  ||||| |||| |||| |||||||||| ||||    
T  40717328 gggtgtgtt-aagagtcccacatcagacagaacatgacctgacaatgtgtttataagtggggacaatcctcacct 40717255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 35645387 - 35645279
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||||| ||||||| || |||| |||||||| |||| || |||| || ||| |  |||||||||||||||||||||||||||  ||||||| ||||||    
T  35645387 cctctcaacgatccatggggccacatgctatcaagtttccgctatcgggccacccgccatttatgtccacgaaccaaacccaattgtgctggtcgtgagg 35645288  T
Q  101 gagtgtgtt 109  Q
    | |||||||    
T  35645287 gggtgtgtt 35645279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 35645676 - 35645568
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||||| ||||||| || |||| |||||||| |||| || |||| || ||| |  |||||||||||||||||||||||||||  ||||||| ||||||    
T  35645676 cctctcaacgatccatggggccacatgctatcaagtttccgctatcgggccacccgccatttatgtccacgaaccaaacccaattgtgctggtcgtgagg 35645577  T
Q  101 gagtgtgtt 109  Q
    | |||||||    
T  35645576 gggtgtgtt 35645568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 21750205 - 21750139
Alignment:
Q  60 tttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcgga 127  Q
    ||||||||||||||||||| |||||||| ||||| ||||||| |||||||||| ||||||||||||||    
T  21750205 tttatgtccacgaaccaaatccaataatactggtcgtgagggggtgtgttaaa-agtctcacatcgga 21750139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 6778653 - 6778540
Alignment:
Q  13 ccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaa 112  Q
    |||||| ||||| ||||||||||||| || |||| || ||| |  |||||||||| |||||||||||| |||| ||||| | ||||||| ||||||| ||    
T  6778653 ccattgaaccacatgctatcaggtttccgctatcgggccaccccccatttatgtctacgaaccaaacctaatagtgctgatcgtgagggggtgtgtt-aa 6778555  T
Q  113 gagtctcacatcgga 127  Q
    ||||| |||||||||    
T  6778554 gagtcccacatcgga 6778540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4645739 - 4645844
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||||||||||||||||  ||||||||||||||||| || |||| || ||| || || ||||||||||||| ||| ||||| | || |||| ||||||    
T  4645739 cctctcaaagatccattgggtcacctgctatcaggtttccgctatcgggccacccaccaattatgtccacgaatcaagcccaaaagtgttggtcgtgagg 4645838  T
Q  101 gagtgt 106  Q
    | ||||    
T  4645839 gggtgt 4645844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22231295 - 22231206
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgct 90  Q
    |||||| || ||||||||| |||||||||||||||||| || |||| || |||  | |||||||||||||||||||| ||||||| ||||    
T  22231295 cctctccaaaatccattgggccacctgctatcaggtttccgctatcgggccacctaccatttatgtccacgaaccaagcccaatagtgct 22231206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 25324249 - 25324140
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| ||||||||||||| |||| || |||| || ||| || ||||||| || ||| ||||| ||||||| |  ||| |||||||| |||||    
T  25324249 aagatccattgggccacctgctatcaagtttccgctatcgggccacccaccatttatatctacgcaccaagcccaatagtattgggtgtgagggggtgtg 25324150  T
Q  108 ttaaagagtc 117  Q
    ||||||||||    
T  25324149 ttaaagagtc 25324140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 33107981 - 33108098
Alignment:
Q  14 cattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaag 113  Q
    |||||| ||||||||||| |||||| ||||||| |  ||| || ||||||||||||| |||||||  |||||||| |||| |||||   |||| ||||||    
T  33107981 cattgggccacctgctataaggtttccgttatcggaccacccaccatttatgtccactaaccaaatacaataatgttggtcgtgagatggtgtattaaag 33108080  T
Q  114 agtctcacatcggacaaa 131  Q
    ||||| |||||| |||||    
T  33108081 agtcttacatcgaacaaa 33108098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 5398431 - 5398305
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    ||||| |||||||| |||  || |||||||||||||| |  |||| |  ||| || |||||||||||||||||||| |||||||||| |||| |||||||    
T  5398431 ctctccaagatccaatgggtcatctgctatcaggtttcccctatcggaccacccaccatttatgtccacgaaccaagcccaataatgttggtcgtgaggg 5398332  T
Q  102 agtgtgttaaagagtctcacatcggacaa 130  Q
     ||||||| ||||||| ||||| ||||||    
T  5398331 -gtgtgtt-aagagtcccacattggacaa 5398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 13495664 - 13495557
Alignment:
Q  15 attggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaaga 114  Q
    ||||| ||||||| ||||||||||  | ||||||||||  || |||||||||||||||| ||| ||||||||||||| | |||| |  | ||||||||||    
T  13495664 attgggccacctgttatcaggtttcggctatcaggtcagccaccatttatgtccacgaatcaagcccaataatgctgatcgtgaag--gggtgttaaaga 13495567  T
Q  115 gtctcacatc 124  Q
    ||||| ||||    
T  13495566 gtctcgcatc 13495557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 30530149 - 30530019
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||| | |||||||||||||| ||| || ||||  ||||| || |||  |||   | ||||||| | ||||| || |||||||||||    
T  30530149 cctctccaagatccattaggccacctgctatcagatttccgctatcgcgtcacccaccatcgatgcttatgaaccaagctcaatagtgatggttgtgagg 30530050  T
Q  101 gagtgtgttaaagagtctcacatcggacaaa 131  Q
    | |||||||||||||| ||||||||| ||||    
T  30530049 gtgtgtgttaaagagtttcacatcgggcaaa 30530019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 42662587 - 42662636
Alignment:
Q  28 ctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    ||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  42662587 ctatcaggtttccgctatcagatcactcatcatttatgtccacgaaccaa 42662636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 1215880 - 1215968
Alignment:
Q  29 tatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtc 117  Q
    ||||||||||  | |||||||| || || ||||||||||||||||||||  |||||| || ||||  | ||||||||||||||||||||    
T  1215880 tatcaggtttctgatatcaggttacccaccatttatgtccacgaaccaagtccaatagtgttggtcataagggagtgtgttaaagagtc 1215968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 11036726 - 11036623
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||| |||| |||||| || ||||||| ||| || |||| ||||||| ||||||| | ||||| ||| ||| |||||||  ||||    
T  11036726 aagatccattgggccacctactattaggtttccgctatcaggccacccaccattaatgtccatgaaccaagctcaatattgcaggtcgtgaggggttgtg 11036627  T
Q  108 ttaa 111  Q
    ||||    
T  11036626 ttaa 11036623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 18981503 - 18981392
Alignment:
Q  13 ccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaa 112  Q
    |||||||||||| |||||||| |||| || |||| |  | | ||||| |||| | || |||||||||||||||||| || | |||||||| |||||||||    
T  18981503 ccattggaccacatgctatcacgtttccgctatctgaccgcccatcacttattttcatgaaccaaacccaataatgttgatcgtgagggaatgtgttaaa 18981404  T
Q  113 gagtctcacatc 124  Q
    | ||| ||||||    
T  18981403 gtgtcccacatc 18981392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13555464 - 13555427
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttt 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  13555464 cctctccaagatccattggaccacctgctatcaggttt 13555427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 26549542 - 26549591
Alignment:
Q  22 cacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacg 71  Q
    |||||||||||||||||  ||||||||| ||| |||||||||||||||||    
T  26549542 cacctgctatcaggtttctgttatcaggccacccatcatttatgtccacg 26549591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 31945076 - 31945141
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacat 123  Q
    |||||||||| || ||||||||||||||  ||| || ||||||  |||||||||||||||||||||    
T  31945076 catttatgtctacaaaccaaacccaatagggctagtcgtgaggatgtgtgttaaagagtctcacat 31945141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 53698912 - 53698967
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacg 71  Q
    ||||||||| ||||||||||||||||||||| |||||  || ||||| ||||||||    
T  53698912 ttggaccacttgctatcaggttttcgttatccggtcatccaccatttgtgtccacg 53698967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 124
Target Start/End: Original strand, 4464485 - 4464514
Alignment:
Q  95 gtgagggagtgtgttaaagagtctcacatc 124  Q
    ||||||||||||||||||||||||||||||    
T  4464485 gtgagggagtgtgttaaagagtctcacatc 4464514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 40716598 - 40716537
Alignment:
Q  10 gatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacg 71  Q
    ||||| |||| |||||||||||||||||| ||||||| || ||| | |||||||||| ||||    
T  40716598 gatccgttgggccacctgctatcaggtttccgttatcgggccacccgtcatttatgttcacg 40716537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 53815002 - 53814933
Alignment:
Q  150 ttattagtgaggacaatccttacctcacaaatcagttt-gtggggttgtgttaaacccaaacacgatttc 218  Q
    |||| |||| || ||||||| ||||||||| || |||| ||||||||||||||| ||||| |||||||||    
T  53815002 ttataagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaagcccaaccacgatttc 53814933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 1215983 - 1216035
Alignment:
Q  48 ggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| || |||||||||||| ||||||| | ||||||||||||| ||||||    
T  1215983 ggtcacccaccatttatgtccaagaaccaagctcaataatgctggtcgtgagg 1216035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 9908817 - 9908773
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatc 46  Q
    ||||| |||||| |||||||||||||||||||| ||| |||||||    
T  9908817 ctctccaagatctattggaccacctgctatcagatttccgttatc 9908773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 22822470 - 22822570
Alignment:
Q  23 acctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcaca 122  Q
    |||||||||||||||| || |||| || |||||| ||| ||  |||||| |||||  |||||| || | | ||||| || |||| |||||||||||||||    
T  22822470 acctgctatcaggtttccgctatcgggccactcaccatatacatccacgcaccaagtccaatagtgtttggtgtgacggggtgttttaaagagtctcaca 22822569  T
Q  123 t 123  Q
    |    
T  22822570 t 22822570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 13574900 - 13574777
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| || ||||  ||||| || |||||||||||||||||||| ||||||| |||| || |||||||||||||    
T  13574900 aagatccattgggccacctgctatcaggtttccgctatcgtgtcacccaccatttatgtccacgaaccaagcccaatagtgctagtcgtgagggagtgtg 13574801  T
Q  108 ttaaagagtctcacatcggacaaa 131  Q
    |||||||||| |||||||||||||    
T  13574800 ttaaagagtcccacatcggacaaa 13574777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 34992704 - 34992828
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    ||||| ||| |||||||| |||||||||||||||||| || | || |||||| || |||||||||||||||||||| ||||||| ||||||| |||||||    
T  34992704 ctctccaaggtccattgggccacctgctatcaggtttccgctgtcgggtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggg 34992803  T
Q  102 agtgtgttaaagagtctcacatcgga 127  Q
     ||||||| ||||||| |||||||||    
T  34992804 ggtgtgtt-aagagtcccacatcgga 34992828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 31317336 - 31317438
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||| ||||||||||| |||||||||||| |||||| || ||| || |||||||||||||||||||||| ||||| ||||||| ||||||| |||||    
T  31317336 aagatccgttggaccacctactatcaggtttt-gttatcgggccacccaccatttatgtccacgaaccaaactcaatagtgctggtcgtgagggggtgtg 31317434  T
Q  108 ttaa 111  Q
    ||||    
T  31317435 ttaa 31317438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 35038415 - 35038291
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||| ||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| | ||||| ||||||    
T  35038415 cctctccaagatccattgggccacctgcaatcaggtttccgctatc-ggccacccaccatttatgtccacgaaccaagcccaatagtactggtcgtgagg 35038317  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  35038316 gggtgtgtt-aagagtcccacatcgga 35038291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 4155422 - 4155544
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    ||||| ||||| |||||| |||||||||||||||||| || |||| || ||| || | |||||||| ||||||||| ||||||| ||||||| ||||| |    
T  4155422 ctctccaagattcattgggccacctgctatcaggtttccgctatcgggccacccaccgtttatgtcgacgaaccaagcccaatagtgctggtcgtgagag 4155521  T
Q  102 agtgtgttaaagagtctcacatcg 125  Q
     ||||||| ||||||| |||||||    
T  4155522 ggtgtgtt-aagagtcccacatcg 4155544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 20327836 - 20327726
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| || ||||||||| |||||||||||||||||| || |||| || ||| || |||||||||||| ||||||| ||||||| || |||| |||||     
T  20327836 cctctctaaaatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccaggaaccaagcccaatagtgttggtcgtgagc 20327737  T
Q  101 gagtgtgttaa 111  Q
    | |||||||||    
T  20327736 gggtgtgttaa 20327726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 19954432 - 19954339
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    |||||||||||| ||| ||||||||||||||||| |||| |  ||| || |||||||||||||||||||| ||||||| | ||||| |||||||    
T  19954432 aagatccattgggccatctgctatcaggttttcgctatctgaccacccaccatttatgtccacgaaccaagcccaatagtactggtcgtgaggg 19954339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 25417152 - 25417269
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||| ||||||  ||| |||||||| |||  ||||||| |  ||| ||||||||||||||| ||||||| |||||||||| |||| ||||| |||||||    
T  25417152 aagattcattgggtcacatgctatcaagttaccgttatcggaccacccatcatttatgtccaggaaccaaccccaataatgatggtcgtgagagagtgtg 25417251  T
Q  108 ttaaagagtctcacatcg 125  Q
    ||||||||| ||| ||||    
T  25417252 ttaaagagtttcatatcg 25417269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 39683433 - 39683365
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcgga 127  Q
    |||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||| |||||||||    
T  39683433 catttatgtccacgaaccaagcccaataatgctggtcgtgagggactgtgtt-aagagtcccacatcgga 39683365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 16239696 - 16239799
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||| || | |||||||||||||||||| |||||||  | ||| || |||||||||||||||||||| | ||||| || |||| ||||||| |||||    
T  16239696 aagatccgtttggccacctgctatcaggtttccgttatcgagccacccaccatttatgtccacgaaccaagctcaatagtgatggtcgtgagggggtgtg 16239795  T
Q  108 ttaa 111  Q
    ||||    
T  16239796 ttaa 16239799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 26753501 - 26753385
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||| ||||||| |||||||||||||| ||||  |||| || ||| |  | ||||||| |||||||||||||||||  ||||| ||||||||| |||||    
T  26753501 aagattcattggatcacctgctatcaggatttcactatcggggcacccgccgtttatgttcacgaaccaaacccaattgtgctgcttgtgagggggtgtg 26753402  T
Q  108 ttaaagagtctcacatcg 125  Q
    || |||||| ||||||||    
T  26753401 tt-aagagtatcacatcg 26753385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 37246833 - 37246764
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||  || |||||||||| |||||||||    
T  37246833 aagattcattggaccacctgctattaggttttcgttatcgggtcatccaccatttatgtcaacgaaccaa 37246764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 45828116 - 45828257
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||  |||||||||| ||||||| || ||||  | ||| || |||||||||||||        |||||||  |||||| ||||||    
T  45828116 cctctccaagatccattgcgccacctgctaccaggtttccgctatcgagccacccaccatttatgtccac--------cccaatag-gctggtcgtgagg 45828206  T
Q  101 gagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtgtt 151  Q
    | ||||||||||||||| |||||||||||||  ||  ||||||||||||||    
T  45828207 gggtgtgttaaagagtcccacatcggacaaaagatggcctgaacatgtgtt 45828257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 20303276 - 20303176
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgtta 110  Q
    |||||||||  ||||||||||||||||| || |||| |  ||| || ||||||||||||||||||||  |||| | ||||||| ||||| | ||||||||    
T  20303276 atccattgggtcacctgctatcaggtttccgctatcggtccacccaccatttatgtccacgaaccaagtccaacagtgctggtcgtgagcgggtgtgtta 20303177  T
Q  111 a 111  Q
    |    
T  20303176 a 20303176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 29215756 - 29215701
Alignment:
Q  55 catcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||| |||||||||    
T  29215756 catcatttatgtccacgaaccaaacccaatagtgttggtcgtgaggg-gtgtgttaa 29215701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 39269171 - 39269270
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| | |||||||||| ||||||||||||||||   ||||||| |  ||| || |||||||||||||||||||| || |||| || |||| ||||||    
T  39269171 cctctccatgatccattgggccacctgctatcaggtggccgttatcggaccacccaccatttatgtccacgaaccaaccctaatagtgttggtcgtgagg 39269270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20303372 - 20303296
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||||| || ||||||||| |||||||||||||||||| |  |||| |  ||| || ||||||||||||||||||||    
T  20303372 cctctctaaaatccattgggccacctgctatcaggtttccactatcggtccacccaccatttatgtccacgaaccaa 20303296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 38791523 - 38791471
Alignment:
Q  150 ttattagtgaggacaatccttacctcacaaatc-agtttgtggggttgtgtta 201  Q
    |||| ||||||||||||||| |||||||||||| | |||||||||||||||||    
T  38791523 ttataagtgaggacaatcctcacctcacaaatcgattttgtggggttgtgtta 38791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 46139359 - 46139443
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaata 85  Q
    |||||| ||||||||||||  |||||||||||||||||  | |||| || ||| || ||||||||| ||| |||||| |||||||    
T  46139359 cctctccaagatccattgggtcacctgctatcaggtttctgctatcgggccacccaccatttatgttcacaaaccaagcccaata 46139443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 49629709 - 49629739
Alignment:
Q  8 aagatccattggaccacctgctatcaggttt 38  Q
    |||||||||||||||||||||||||||||||    
T  49629709 aagatccattggaccacctgctatcaggttt 49629739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 11659661 - 11659600
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtcca 69  Q
    ||||||| |||||| ||||||||||||||||||| |||| |  ||| || ||||||||||||    
T  11659661 aagatccgttggacaacctgctatcaggttttcgctatcggaccacccaccatttatgtcca 11659600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 52724183 - 52724130
Alignment:
Q  26 tgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaac 79  Q
    |||||||||||||||| |||| || ||| || |||||||||||| |||||||||    
T  52724183 tgctatcaggttttcgctatcgggccacccaccatttatgtccatgaaccaaac 52724130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 272575 - 272507
Alignment:
Q  55 catcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacat 123  Q
    ||||||||||||||| ||| ||| | ||| | |||| || |||||| |||||||||| |||||||||||    
T  272575 catcatttatgtccatgaatcaagctcaacagtgcttgtcgtgaggaagtgtgttaatgagtctcacat 272507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 18757889 - 18757929
Alignment:
Q  185 tttgtggggttgtgttaaacccaaacacgatttccaagagt 225  Q
    |||||||||||||||||  ||||| ||||||||||||||||    
T  18757889 tttgtggggttgtgttaggcccaaccacgatttccaagagt 18757929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 22729648 - 22729700
Alignment:
Q  59 atttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    ||||||||||||||||||| |||||||||||| || ||||  | |||||||||    
T  22729648 atttatgtccacgaaccaagcccaataatgctagtcgtgaacgggtgtgttaa 22729700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 46794197 - 46794229
Alignment:
Q  95 gtgagggagtgtgttaaagagtctcacatcgga 127  Q
    ||||| |||||||||||||||||||||||||||    
T  46794197 gtgagagagtgtgttaaagagtctcacatcgga 46794229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 15124769 - 15124645
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||  || ||||||||||||||||||||  |||||| |||||||||||||||    
T  15124769 ctctccaagatccattggaccacctgctatcaggttttcgttatcgggtcatccaccatttatgtccacgaaccaagtccaatagtgctggttgtgaggg 15124670  T
Q  102 agtgtgttaaagagtctcacatcgga 127  Q
      |||||| ||||||| |||||||||    
T  15124669 gatgtgtt-aagagtcccacatcgga 15124645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 5711654 - 5711438
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||| ||||||||||||||||||||||| ||||||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| |||||    
T  5711654 aagatccgttggaccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtg 5711555  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtgttaaacc 205  Q
    || ||||||| ||||||||| |   |||  |||||  ||||| |||| |||| || ||||||| |||| ||||  | | |||||||||||||||||  ||    
T  5711554 tt-aagagtcccacatcggaaaggaaatggcctgacaatgtgtttataagtgggggcaatcctcacctaacaagccggttttgtggggttgtgttaggcc 5711456  T
Q  206 caaacacgatttccaaga 223  Q
    ||| ||||||||| ||||    
T  5711455 caaccacgatttctaaga 5711438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2029866 - 2029993
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||||||| |||||| || |||| |  ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  2029866 cctctccaagatccattgggccacctgctattaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 2029965  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||| |||||||||||    
T  2029966 gggtgtgtt-aagagtcccacatcggaca 2029993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 16419364 - 16419489
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||||||||||||| || ||||  | ||| || |||||||||||||||||||| | ||||| ||||||| ||||||    
T  16419364 cctctccaagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgagg 16419463  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  16419464 gggtgtgtt-aagagtcccacatcgga 16419489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 37812490 - 37812365
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||||||||||||||  | |||| || ||| ||   |||||||||||||||||| ||||||||||||||| ||||||    
T  37812490 cctctccaagatccattgggccacctgctatcaggtttctgctatcgggccacccactgtttatgtccacgaaccaagcccaataatgctggtcgtgagg 37812391  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  37812390 gggtgtgtt-aagagtcccacatcgga 37812365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 14466397 - 14466270
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||| || |||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  14466397 cctctccaagatccattgggccacttgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 14466298  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||  |||||||||||    
T  14466297 gggtgtgtt-aagagttccacatcggaca 14466270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 17525311 - 17525194
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgtta 110  Q
    ||||||||| |||||||||||||||| | || |||| || ||| || |||||||||||||||||||| ||||||| || |||| ||||| | ||||||||    
T  17525311 atccattgggccacctgctatcaggtatccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgatggtcgtgagtgggtgtgtta 17525212  T
Q  111 aagagtctcacatcggaca 129  Q
    || ||||||||||||||||    
T  17525211 aa-agtctcacatcggaca 17525194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 16533416 - 16533519
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| | ||||||||||||||||||| |||| || ||| || ||||||||||||||||||||  |||||| ||||||| ||||| | |||||    
T  16533416 aagatccattgggctacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaaggccaatagtgctggtcgtgagagggtgtg 16533515  T
Q  108 ttaa 111  Q
    ||||    
T  16533516 ttaa 16533519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 41069253 - 41069334
Alignment:
Q  50 tcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaa 131  Q
    |||||||||||||||||||||||||||| | ||||| | ||||| ||||||||||||||||||||||| | |||| ||||||    
T  41069253 tcactcatcatttatgtccacgaaccaagctcaatagtactggtcgtgagggagtgtgttaaagagtcccgcatcagacaaa 41069334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 18607231 - 18607109
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||| ||||||||||||| ||||||| ||  || || |||||||||| ||||||||| ||||||| |||| || ||| ||    
T  18607231 cctctccaagatccattgggccacatgctatcaggtttccgttatcgggcaacccaccatttatgtctacgaaccaagcccaatagtgctagtcgtgtgg 18607132  T
Q  101 gagtgtgttaaagagtctcacatc 124  Q
    | |||||||  |||||||||||||    
T  18607131 gtgtgtgtt-tagagtctcacatc 18607109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 44404148 - 44404038
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcg-ttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    ||||| ||||||||||||||||||||||||||||||| ||  |||| |||||| ||  ||||||||||| ||||||| ||||||| || |||| |||| |    
T  44404148 ctctccaagatccattggaccacctgctatcaggtttccgcctatcgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtgatg 44404049  T
Q  101 gagtgtgttaa 111  Q
    | |||||||||    
T  44404048 gggtgtgttaa 44404038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 93341 - 93249
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggt 93  Q
    |||||| |||||||||||| |||||||||||||| ||| ||||||| || ||| || || ||||||||||||| ||| ||||||| |||||||    
T  93341 cctctccaagatccattgggccacctgctatcagctttccgttatcgggccacccaccaattatgtccacgaatcaagcccaatagtgctggt 93249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 33606269 - 33606151
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||| |||||  ||| ||||||||||||| || ||||||| ||| || |||||||||||||||||||| || |||| || |||| ||||||  |||||    
T  33606269 aagatctattgggtcacttgctatcaggtttccgctatcaggccacccaccatttatgtccacgaaccaagcctaatagtgatggtcgtgaggtggtgtg 33606170  T
Q  108 ttaaagagtctcacatcgga 127  Q
    || ||||||| |||||||||    
T  33606169 tt-aagagtcccacatcgga 33606151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 40379424 - 40379306
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||| | |||||||||||||||||| |  |||| || ||| || ||||||| |||||||||||| ||||| | ||||||| ||||||  |||||    
T  40379424 aagatccattaggccacctgctatcaggtttcctctatcgggccacccaccatttatatccacgaaccaagcccaaaagtgctggtcgtgaggaggtgtg 40379325  T
Q  108 ttaaagagtctcacatcgga 127  Q
    || ||||||| |||||||||    
T  40379324 tt-aagagtcccacatcgga 40379306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 19571093 - 19570971
Alignment:
Q  105 gtgttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatc-agtttgtggggttgtgttaa 202  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||| |||| |||| || ||||||| |||||| || || | |||||||  ||||||||     
T  19571093 gtgttaaagagtctcacatcggacaaataatgaactgaacatgtgtttataagtgggggcaatcctcacctcataagtcgattttgtggaattgtgttag 19570994  T
Q  203 acccaaacacgatttccaagagt 225  Q
     ||||| ||||||||| ||||||    
T  19570993 gcccaaccacgatttctaagagt 19570971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 36063267 - 36063365
Alignment:
Q  25 ctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacat 123  Q
    ||||||||||||||   ||||||||||||||||||| ||||||||||||||||||| |||| || || | || |  | ||||||||||||||| |||||    
T  36063267 ctgctatcaggtttcttttatcaggtcactcatcatatatgtccacgaaccaaacctaatagtgttgatcgtaaaagggtgtgttaaagagtcgcacat 36063365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 40149216 - 40149024
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||||||  ||||||||||||| |||  | |||| |  ||| ||  ||||||||||||||||||| ||||||| ||||||| ||||||  |||||    
T  40149216 aagatccattgggtcacctgctatcagatttcagctatcggaccacccactatttatgtccacgaaccaagcccaatagtgctggtcgtgagg--gtgtg 40149119  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaaca-tgtg-ttattagtgaggacaatccttacctcacaaatc-agtttgtggggttgtgtta 201  Q
    || ||||||||||||||||| | |  || |||| |||| |||| |||| |||| |||||||||| |||||||||  | | |||||||||||||||||    
T  40149118 tt-aagagtctcacatcggatagaagatgacct-aacagtgtgtttataagtggggacaatcctcacctcacaagccgattttgtggggttgtgtta 40149024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34893522 - 34893598
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||||| |||||||||||| |||||| |||||||||||||| |||| |  ||| || ||||||||||||||||||||    
T  34893522 cctctccaagatccattgggccacctactatcaggttttcgctatcggaccacccaccatttatgtccacgaaccaa 34893598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 42895344 - 42895467
Alignment:
Q  1 cctctcaaagatccatt-ggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgag 99  Q
    |||||| |||||||||| || ||||||| ||||| |||| || |||| ||  || || |||||||||||  |||||||||| |||| || |||| |||||    
T  42895344 cctctctaagatccattagggccacctgatatcaagtttccgctatcgggcgacccaccatttatgtccctgaaccaaacctaatagtgttggtcgtgag 42895443  T
Q  100 ggagtgtgttaaagagtctcacat 123  Q
     | |||||||||||||||||||||    
T  42895444 agcgtgtgttaaagagtctcacat 42895467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 21383492 - 21383386
Alignment:
Q  21 ccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctca 120  Q
    |||||||||||||||||| || |||  || ||| ||| |||||| |||||| ||||| | ||||| || ||| |||||||| ||||||||||||||| |     
T  21383492 ccacctgctatcaggtttccgctattgggccacccattatttatatccacgcaccaagcacaatagtggtgggtgtgagggggtgtgttaaagagtcccg 21383393  T
Q  121 catcgga 127  Q
    |||||||    
T  21383392 catcgga 21383386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 33381127 - 33381061
Alignment:
Q  49 gtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagag 115  Q
    ||||| |||||||||||||||||||||||||||| || ||||||| ||||||   ||||||||||||    
T  33381127 gtcacccatcatttatgtccacgaaccaaacccagtagtgctggtcgtgaggagatgtgttaaagag 33381061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 15461095 - 15461147
Alignment:
Q  25 ctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||||||||| |||||| |||| |||||| |||||||||||||||||||||||    
T  15461095 ctgctatcagattttcgctatcgggtcacacatcatttatgtccacgaaccaa 15461147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 19110347 - 19110458
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||| ||||  |||||||||| ||||||| | |||| || || |||||||||||| ||||||||||| | ||||| ||||| | ||||| | |||||    
T  19110347 aagatccgttgggtcacctgctattaggtttttgctatcgggccattcatcatttatgcccacgaaccaagctcaatagtgctgatcgtgagagtgtgtg 19110446  T
Q  108 ttaaagagtctca 120  Q
    || ||||||||||    
T  19110447 tt-aagagtctca 19110458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 43819490 - 43819444
Alignment:
Q  105 gtgttaaagagtctcacatcggacaaacaataacctgaacatgtgtt 151  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||||    
T  43819490 gtgttaaagagtctcacatcagacaaaaaataacatgaacatgtgtt 43819444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 17719498 - 17719573
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    ||||| |||||||||| | |||||||||||||||||| |  |||| || ||  || ||||||||||||||||||||    
T  17719498 ctctccaagatccatttggccacctgctatcaggtttcccctatccggccatccaccatttatgtccacgaaccaa 17719573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 7748113 - 7748179
Alignment:
Q  22 cacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatg 88  Q
    |||||||||||||||||||||||||  ||||  |||||||||| || | | |||||| |||||||||    
T  7748113 cacctgctatcaggttttcgttatcgagtcatccatcatttatatctatgcaccaaatccaataatg 7748179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 24395967 - 24396087
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa--acccaataatgctggttgtgagggagtg 105  Q
    |||||||||||||||||||||| ||| ||||||  |||| |  ||| || |||||||||||| |||||||   ||||||  || ||||  |||||| |||    
T  24395967 aagatccattggaccacctgctctcatgttttcactatcggaccacccaccatttatgtccatgaaccaagcccccaatggtgttggtcatgagggggtg 24396066  T
Q  106 tgttaaagagtctcacatcgga 127  Q
    |||| ||||||| |||||||||    
T  24396067 tgtt-aagagtcccacatcgga 24396087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 31001951 - 31001845
Alignment:
Q  20 accacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctc 119  Q
    ||||||||||||||||||| || ||||| | |||  | ||||||| |||||||||||| ||||||| || |||   |||  | |||||||| ||| ||||    
T  31001951 accacctgctatcaggtttccgctatcatgccacctaccatttatatccacgaaccaagcccaatagtgatgggcatgaatgggtgtgttagagaatctc 31001852  T
Q  120 acatcgg 126  Q
    |||||||    
T  31001851 acatcgg 31001845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 37828442 - 37828370
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaa 131  Q
    ||||| ||||| ||||||||||||||||  |||||  || || || ||||||||| ||||||||||||||||||    
T  37828442 catttgtgtccgcgaaccaaacccaatagagctggccgttagaga-tgtgttaaatagtctcacatcggacaaa 37828370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 10523208 - 10523240
Alignment:
Q  95 gtgagggagtgtgttaaagagtctcacatcgga 127  Q
    ||||||||||||||||||||||| |||||||||    
T  10523208 gtgagggagtgtgttaaagagtcccacatcgga 10523240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 13250187 - 13250127
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtct 118  Q
    |||||||||||||||| ||  ||||||| || |||| |||||||  |||||||||||||||    
T  13250187 catttatgtccacgaagcatgcccaatagtgatggtcgtgaggggatgtgttaaagagtct 13250127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 41666972 - 41666754
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||| |||| |||||||||||||||||| ||||||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| |||||    
T  41666972 aagatccgttgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtg 41666873  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtgttaaacc 205  Q
    || ||||||| |||||||||||    ||  |||||  ||||| |||| |||| || ||||||| |||||||||  | | |||||||||||||||||  ||    
T  41666872 tt-aagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcc 41666774  T
Q  206 caaacacgatttccaagagt 225  Q
    ||| ||||||||| ||||||    
T  41666773 caaccacgatttctaagagt 41666754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 24270085 - 24269967
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| ||||||| || ||| || |||||||||||||||||||| | ||||| ||||||| ||||||| |||||    
T  24270085 aagatccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtg 24269986  T
Q  108 ttaaagagtctcacatcgga 127  Q
    || ||||||| |||||||||    
T  24269985 tt-aagagtcccacatcgga 24269967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 24346716 - 24346598
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| ||||||| || ||| || |||||||||||||||||||| | ||||| ||||||| ||||||| |||||    
T  24346716 aagatccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtg 24346617  T
Q  108 ttaaagagtctcacatcgga 127  Q
    || ||||||| |||||||||    
T  24346616 tt-aagagtcccacatcgga 24346598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 95488 - 95363
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||||||||||||| ||  ||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  95488 cctctccaagatccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 95389  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  95388 gggtgtgtt-aagagtcacacatcgga 95363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 15590049 - 15590158
Alignment:
Q  15 attggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaaga 114  Q
    ||||| ||||||||||||| |||| || |||| ||  ||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||    
T  15590049 attgggccacctgctatcaagtttccgctatcgggctactcaccatttatgtccacgaaccaaacccaatagtgctggtcgtgagggggtgtgtt-aaga 15590147  T
Q  115 gtctcacatcg 125  Q
    |||||||||||    
T  15590148 gtctcacatcg 15590158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 9368699 - 9368817
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| || |||  |  ||| || ||| |||||||||||||||||||||||| ||||||| ||||||| ||||     
T  9368699 aagatccattgggccacctgctatcaggtttccgctattggaccacccaccatgtatgtccacgaaccaaacccaatagtgctggtcgtgagggggtgtc 9368798  T
Q  108 ttaaagagtctcacatcgga 127  Q
    || ||||||| |||||||||    
T  9368799 tt-aagagtcccacatcgga 9368817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 18333679 - 18333577
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||| || ||||||||||||||||||||| |||| || ||| || |||||||||||||||||||| |||| || ||||||| ||||||| |||||    
T  18333679 aagatccatcgggccacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaagcccattagtgctggtcgtgaggg-gtgtg 18333581  T
Q  108 ttaa 111  Q
    ||||    
T  18333580 ttaa 18333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 32908932 - 32908830
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| ||| ||||||||||||||  | |||| |||||| || |||||||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  32908932 aagatccattgggccatctgctatcaggtttctgctatcgggtcacccaccatttatgtcaacgaaccaaacccaatagtgctggtcgtgaggg-gtgtg 32908834  T
Q  108 ttaa 111  Q
    ||||    
T  32908833 ttaa 32908830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 8081334 - 8081211
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggga 102  Q
    |||| |||||| ||||| |||||||||||||||| | |  |||| |  ||| || |||||||||||||||||||| ||||||| ||||||| |||||||     
T  8081334 tctccaagatcgattgggccacctgctatcaggtatcccctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggg 8081235  T
Q  103 gtgtgttaaagagtctcacatcgga 127  Q
    ||||||| ||||||| |||||||||    
T  8081234 gtgtgtt-aagagtcccacatcgga 8081211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 25258286 - 25258178
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggga 102  Q
    |||| |||||||||||| |||||||||||||||||| || |||| |  ||| ||  ||||||||||||||||||| || ||||||||||||  ||||||     
T  25258286 tctccaagatccattgggccacctgctatcaggtttccgctatcggaccacccacaatttatgtccacgaaccaagccaaataatgctggtcatgagggg 25258187  T
Q  103 gtgtgttaa 111  Q
    |||||||||    
T  25258186 gtgtgttaa 25258178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 25322076 - 25321968
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggga 102  Q
    |||| |||||||||||| |||||||||||||||||| || |||| |  ||| ||  ||||||||||||||||||| || ||||||||||||  ||||||     
T  25322076 tctccaagatccattgggccacctgctatcaggtttccgctatcggaccacccacaatttatgtccacgaaccaagccaaataatgctggtcatgagggg 25321977  T
Q  103 gtgtgttaa 111  Q
    |||||||||    
T  25321976 gtgtgttaa 25321968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24531696 - 24531806
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| | |||||||||| |||||||||||||| |||  ||||||    ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  24531696 cctctctatgatccattgggccacctgctatcagttttctgttatcgaaccacccaacatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 24531795  T
Q  101 gagtgtgttaa 111  Q
    | |||||||||    
T  24531796 gggtgtgttaa 24531806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 26137316 - 26137208
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagag 115  Q
    |||| ||||||||||||||||||||   ||| || ||| |||||||||||||||||||||||  ||||||||||| || ||||||| |||| || |||||    
T  26137316 ttgggccacctgctatcaggttttcaccatcgggccacccatcatttatgtccacgaaccaagtccaataatgctagtcgtgagggggtgtatt-aagag 26137218  T
Q  116 tctcacatcg 125  Q
    || |||||||    
T  26137217 tcccacatcg 26137208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 33337451 - 33337350
Alignment:
Q  10 gatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgtt 109  Q
    ||||||||||||||  ||||||||||||| ||  ||| || ||| || |||||||||||||||||||| ||||||| |||||||  |||||| |||||||    
T  33337451 gatccattggaccatttgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcatgagggggtgtgtt 33337352  T
Q  110 aa 111  Q
    ||    
T  33337351 aa 33337350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 13700805 - 13700728
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaata 85  Q
    ||||||||||||  ||||||||||||||||| || ||||||| ||| || ||||||||  ||||||||||||||||||    
T  13700805 aagatccattgggtcacctgctatcaggtttccgctatcaggccacccaccatttatgatcacgaaccaaacccaata 13700728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 30770214 - 30770146
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcgga 127  Q
    |||||||||||||||||||| |||||||  |||||||||||||| ||||||| ||||||| |||||||||    
T  30770214 catttatgtccacgaaccaagcccaatagcgctggttgtgagggggtgtgtt-aagagtcccacatcgga 30770146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 43117751 - 43117844
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    |||||| ||||| |||||||||||||||||| || |||| |  ||| ||||||||||||||||||||||| | ||||| || |||| |||||||    
T  43117751 aagatctattgggccacctgctatcaggtttccgctatcggaccacccatcatttatgtccacgaaccaagctcaatagtgttggtcgtgaggg 43117844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 6415782 - 6415882
Alignment:
Q  14 cattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaag 113  Q
    |||||||||||||||||||| || | |  |||| |||||  || | |||||||||||||||||| ||||||| || |||||||||||  |||||||||||    
T  6415782 cattggaccacctgctatcaagtctccactatcgggtcatccaccgtttatgtccacgaaccaagcccaatagtgttggttgtgaggttgtgtgttaaag 6415881  T
Q  114 a 114  Q
    |    
T  6415882 a 6415882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 6919409 - 6919294
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||   || |||||||||||||| || | || |  |||||| |||||||||||||||||||| ||||||| ||||||| |||| || |||||    
T  6919409 aagatccattgagtcatctgctatcaggtttccgctttcggaccactcaccatttatgtccacgaaccaagcccaatagtgctggtcgtgatggtgtgtg 6919310  T
Q  108 ttaaagagtctcacatc 124  Q
    || ||||||| ||||||    
T  6919309 tt-aagagtcccacatc 6919294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 15480426 - 15480541
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| || |||  || ||| || |||||||||||| ||||||| || |||  ||||||| ||||||  |||||    
T  15480426 aagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccatgaaccaagcctaatcgtgctggtcgtgaggaggtgtg 15480525  T
Q  108 ttaaagagtctcacatc 124  Q
    || ||||||| ||||||    
T  15480526 tt-aagagtcccacatc 15480541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 17150448 - 17150345
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||| ||||||||||| || |||| || ||| || ||||||||||||  ||||||  |||||| || || ||||||||| |||||    
T  17150448 aagatccattgggccacctactatcaggtttccgctatcgggccacccaccatttatgtccagaaaccaataccaatagtgttgtttgtgagggggtgtg 17150349  T
Q  108 ttaa 111  Q
    ||||    
T  17150348 ttaa 17150345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 16704683 - 16704621
Alignment:
Q  23 acctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaata 85  Q
    ||||||||||| ||||  | |||| |||||||||||||||||||||||||||||| |||||||    
T  16704683 acctgctatcatgtttcagctatcgggtcactcatcatttatgtccacgaaccaagcccaata 16704621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 38731803 - 38731715
Alignment:
Q  23 acctgctatcaggttttcgttatca-ggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    ||||||||||||||||  | ||||| || ||| ||||||||||||||| ||||||| ||||||| ||||||| ||||||| |||||||||    
T  38731803 acctgctatcaggtttctgctatcacgggcacccatcatttatgtccatgaaccaagcccaatagtgctggtcgtgaggg-gtgtgttaa 38731715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 17352636 - 17352533
Alignment:
Q  21 ccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctca 120  Q
    |||| ||||||||||||| || |||  ||||||  | | |||||||||||||||||| ||||||||||||||| || |||  ||||||| ||||||| ||    
T  17352636 ccacttgctatcaggtttccgctattgggtcacctaccgtttatgtccacgaaccaagcccaataatgctggtcgtaaggaggtgtgtt-aagagtccca 17352538  T
Q  121 catcg 125  Q
    |||||    
T  17352537 catcg 17352533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 18885346 - 18885447
Alignment:
Q  23 acctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcaca 122  Q
    ||||||| ||||||||||| |||| |  ||| || |||||||||| | ||||||| ||||||| ||||||| ||||| | ||||||| ||||||| ||||    
T  18885346 acctgctttcaggttttcgctatcggaccacccaccatttatgtctatgaaccaagcccaatagtgctggtcgtgagagggtgtgtt-aagagtcccaca 18885444  T
Q  123 tcg 125  Q
    |||    
T  18885445 tcg 18885447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 11896080 - 11896027
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    ||||||||||| |||||||||||||||| || |||| ||||||| |||||||||    
T  11896080 catttatgtccgcgaaccaaacccaatagtgatggtcgtgagggggtgtgttaa 11896027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11896378 - 11896302
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||||| |||||||||||  |||||| ||||||||||| || |||| |  ||| || ||||||||||||||||||||    
T  11896378 cctctccaagatccattgtgccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaa 11896302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 20510807 - 20510641
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattag 156  Q
    |||||||||||||||||||| ||||||| || || | ||||||| ||||||| ||||| | ||||||||| |    ||  |||||  || || |||| ||    
T  20510807 catttatgtccacgaaccaagcccaatagtgatgatcgtgagggggtgtgtt-aagagccccacatcggataggtgatggcctgacaatatgtttataag 20510709  T
Q  157 tgaggacaatccttacctcacaaatcag-tttgtggggttgtgttaaacccaaacacgatttccaaga 223  Q
    || || ||||||| |||||| ||| ||| ||||||| |||||||||  ||||||||||||||| ||||    
T  20510708 tgggggcaatcctcacctcaaaaaccagttttgtggagttgtgttaggcccaaacacgatttctaaga 20510641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 25258374 - 25258300
Alignment:
Q  150 ttattagtgaggacaatccttacctcacaaatcagttt-gtggggttgtgttaaacccaaacacgatttccaaga 223  Q
    |||| |||| || ||||||| ||||||||| || |||| ||||||||||||||||| ||| ||||||||| ||||    
T  25258374 ttatcagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaaga 25258300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 25322164 - 25322090
Alignment:
Q  150 ttattagtgaggacaatccttacctcacaaatcagttt-gtggggttgtgttaaacccaaacacgatttccaaga 223  Q
    |||| |||| || ||||||| ||||||||| || |||| ||||||||||||||||| ||| ||||||||| ||||    
T  25322164 ttatcagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaaga 25322090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 6413637 - 6413568
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||||||||||| |||||||||||||||| | |  ||||  | ||| || ||||||||||||||||||||    
T  6413637 aagatccattgggccacctgctatcaggtatccactatcgagccacccaccatttatgtccacgaaccaa 6413568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 7133911 - 7133854
Alignment:
Q  22 cacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaac 79  Q
    |||||||||||| |||| || ||||||  ||||||| |||||||||||| ||||||||    
T  7133911 cacctgctatcaagtttccgctatcagaccactcattatttatgtccacaaaccaaac 7133854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 31892249 - 31892374
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||| | ||||| |||||||||||||||||| |||||||||| ||| || |||||||||||||||||||| |||||||||| |||| ||||||    
T  31892249 cctctccaagacctattgggccacctgctatcaggtttccgttatcaggccacccaccatttatgtccacgaaccaagcccaataatgatggtcgtgagg 31892348  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| |||||||||||||||||    
T  31892349 gggtgtgtt-aagagtctcacatcgga 31892374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 36277213 - 36277086
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||| ||||||||||| || |||| |  ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  36277213 cctctccaagatccattgggccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 36277114  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| |||||||||||||| ||||    
T  36277113 gggtgtgtt-aagagtctcacatcagaca 36277086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 1596690 - 1596817
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||| || |||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| ||||||| |||||     
T  1596690 cctctccaagatccattgggccacatgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaga 1596789  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||| |||||||||||    
T  1596790 gtgtgtgtt-aagagtcccacatcggaca 1596817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 21861391 - 21861518
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||| |||||||||| || |||| || ||| || |||||||||||||||||||| || |||| ||||||| ||||||    
T  21861391 cctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcctaatagtgctggtcgtgagg 21861490  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||  |||||||||||    
T  21861491 gggtgtgtt-aagagttccacatcggaca 21861518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 29469702 - 29469829
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||| ||||||| || || |||| || ||| || |||||||||||||||| ||| ||||||| ||||||| ||||||    
T  29469702 cctctccaagatccattgggccacctgttatcaggcttccgctatcgggccacccaccatttatgtccacgaatcaagcccaatagtgctggtcgtgagg 29469801  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||| |||||||||||    
T  29469802 gggtgtgtt-aagagtcccacatcggaca 29469829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 3519923 - 3519822
Alignment:
Q  25 ctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatc 124  Q
    |||||||||||||| || |||| || ||| || |||||||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||| ||||||    
T  3519923 ctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaataatgctggtcgtgagggggtgtgtt-aagagtcccacatc 3519825  T
Q  125 gga 127  Q
    |||    
T  3519824 gga 3519822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 33834288 - 33834413
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||||||||||||||||  |||| || ||| || |||||||||||||||||||| ||||||| || |||| |||| |    
T  33834288 cctctccaagatccattgggccacctgctatcaggttttccctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgaag 33834387  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||| ||| ||||||| |||||||||    
T  33834388 gggtgggtt-aagagtcccacatcgga 33834413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3520026 - 3519926
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| | |||||||||| |||||||||||| |||||||| |||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  3520026 cctctccatgatccattgggccacctgctatctggttttcgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 3519927  T
Q  101 g 101  Q
    |    
T  3519926 g 3519926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 40746239 - 40746130
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagag 115  Q
    |||| ||||||||||||||||||||||||||    ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| ||||||| |||||    
T  40746239 ttgggccacctgctatcaggttttcgttatcgaaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggg-gtgtgtt-aagag 40746142  T
Q  116 tctcacatcgga 127  Q
    || |||||||||    
T  40746141 tcccacatcgga 40746130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 25620233 - 25620343
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||||||||||||| || |||  || ||| || |||||||||||||||||||| ||||||| || |||| |||| |    
T  25620233 cctctccaagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgaag 25620332  T
Q  101 gagtgtgttaa 111  Q
    | |||||||||    
T  25620333 gtgtgtgttaa 25620343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 22574699 - 22574823
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    ||||| |||||||||||| ||||||||||||||||||  | |||| |  ||| || |||||||||| ||||||||| ||||||| || |||| ||||||     
T  22574699 ctctccaagatccattgggccacctgctatcaggtttcagctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgttggtcgtgaggt 22574798  T
Q  102 agtgtgttaaagagtctcacatcgga 127  Q
     ||||||| |||||||||||||||||    
T  22574799 ggtgtgtt-aagagtctcacatcgga 22574823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 22339582 - 22339460
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||||||||||||||||| |||||||||  ||||    ||| || |||| |||||||||||| || ||||||| || || | |||| ||||||||    
T  22339582 aagatccattggaccacctgctaccaggttttctctatcgacccac-caccattaatgtccacgaacaaagcccaatagtgttgatcgtgaaggagtgtg 22339484  T
Q  108 ttaaagagtctcacatcggacaaa 131  Q
    ||||||||| ||||||||||||||    
T  22339483 ttaaagagtttcacatcggacaaa 22339460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 6001633 - 6001440
Alignment:
Q  25 ctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatc 124  Q
    |||||||||||||| |  ||||  ||| | || ||||||| |||||||||||| || |||||||||||| ||||||||||||||| ||||||| ||||||    
T  6001633 ctgctatcaggtttcccctatcgagtctcccaccatttatttccacgaaccaagcctaataatgctggtcgtgagggagtgtgtt-aagagtcccacatc 6001535  T
Q  125 ggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatc-agtttgtggggttgtgttaaacccaaacacgattt 217  Q
    ||| | |  || ||||||  || || |||| |||| || ||||||| |||||| ||| | | ||||| ||||| |||||||||||| ||||||||    
T  6001534 ggatagaagatgacctgacaatatgtttataagtgggggcaatcctcacctcagaaaccgattttgtagggttatgttaaacccaaccacgattt 6001440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 35308439 - 35308353
Alignment:
Q  25 ctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    ||||||| ||||||||| |||| |||||| |||| | ||||||||||||||||||||||||||| |||||||||  | |||||||||    
T  35308439 ctgctattaggttttcgctatcgggtcacccatcgtctatgtccacgaaccaaacccaataatgttggttgtgatagggtgtgttaa 35308353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 44874558 - 44874473
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggt 93  Q
    ||||||||||||  ||||||||||||||||| |   ||| |||||| ||||||||||||| ||||||||||||||||||| |||||    
T  44874558 aagatccattgggtcacctgctatcaggtttccacaatcgggtcacccatcatttatgtctacgaaccaaacccaataatactggt 44874473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 33996291 - 33996176
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgtta 110  Q
    ||||||||| |||||||||||||||||| ||  ||| || ||| || |||||||||||||||||||| ||||||| || || | ||||||| ||| |||     
T  33996291 atccattgggccacctgctatcaggtttccgcaatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttgatcgtgagggtgtgagtt- 33996193  T
Q  111 aagagtctcacatcgga 127  Q
    ||||||| |||||||||    
T  33996192 aagagtcccacatcgga 33996176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 31485639 - 31485536
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||| |||||||||||||  |||| || ||| || ||||||| |||||||| ||||||||||| || || | ||||||| |||||    
T  31485639 aagatccattgggccacctactatcaggttttcactatcgggccacccaccatttatatccacgaatcaaacccaatagtgttgttcgtgagggggtgtg 31485540  T
Q  108 ttaa 111  Q
    ||||    
T  31485539 ttaa 31485536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 4886427 - 4886548
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    ||||| |||||||||||| ||||||||||||| ||||    ||||  | ||| || |||||||||||||||||||| ||||||| | ||||| |||||||    
T  4886427 ctctccaagatccattgggccacctgctatcaagtttctactatcgagccacccaccatttatgtccacgaaccaagcccaatagtactggtcgtgaggg 4886526  T
Q  102 agtgtgttaaagagtctcacatcg 125  Q
    |   |||| |||||||||||||||    
T  4886527 a--atgtttaagagtctcacatcg 4886548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 48661535 - 48661431
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggtt-gtgagggagtgt 106  Q
    |||| ||||||  |||||||||||||||||| || | || || ||| || |||||||||||||||||||| ||||||| || ||||| ||||||| ||||    
T  48661535 aagaaccattgagccacctgctatcaggtttccgctttcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggttcgtgagggggtgt 48661436  T
Q  107 gttaa 111  Q
    |||||    
T  48661435 gttaa 48661431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 24612714 - 24612784
Alignment:
Q  59 atttatgtccacgaaccaaacccaataa--tgctggttgtgagggagtgtgttaaagagtctcacatcgga 127  Q
    |||||||| ||||||||||||||||||   |||| ||||||| || |||||||||||||||||||||||||    
T  24612714 atttatgttcacgaaccaaacccaatatagtgctagttgtgaaggggtgtgttaaagagtctcacatcgga 24612784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 35308335 - 35308246
Alignment:
Q  34 ggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatc 124  Q
    |||||||| ||||||||||  || | |||||||||||||||||| ||||||| ||||||| ||||  ||||||||| |||| |||||||||    
T  35308335 ggttttcgctatcaggtcatccaccgtttatgtccacgaaccaagcccaatagtgctggtcgtgaatgagtgtgtt-aagaatctcacatc 35308246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 2376423 - 2376311
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgtta 110  Q
    ||||||| |||| | |||||||| |||| |  |||| |||||  || ||| ||||| ||||| |||| ||||||||||||||||  |||||||||| |||    
T  2376423 atccattcgaccgcatgctatcaagtttccactatcgggtcatccaccatctatgttcacga-ccaagcccaataatgctggttaggagggagtgtctta 2376325  T
Q  111 aagagtctcacatc 124  Q
    ||||||||||||||    
T  2376324 aagagtctcacatc 2376311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 2315246 - 2315138
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggga 102  Q
    |||| ||| |||||||| |||||||||||||| ||| ||  ||| |  ||| || |||||||||||||||||||| ||||||| || |||| |||||||     
T  2315246 tctccaaggtccattgggccacctgctatcagatttccgcaatcggaccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggg 2315147  T
Q  103 gtgtgttaa 111  Q
    |||| ||||    
T  2315146 gtgtattaa 2315138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 26562045 - 26561990
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacg 71  Q
    |||| ||||||| |||||||||| |||||||||||||| |||||||||||| ||||    
T  26562045 ttgggccacctgttatcaggtttccgttatcaggtcacccatcatttatgttcacg 26561990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9689087 - 9689050
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttt 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9689087 cctctccaagatccattggaccacctgctatcaggttt 9689050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 2938080 - 2938128
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttat 64  Q
    ||||| |||||||||||| ||||||| |||||||||||||||| |||||    
T  2938080 ttggatcacctgctatcaagttttcgctatcaggtcactcatcttttat 2938128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 4507036 - 4507149
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||||||  ||||||||||||| ||| |||||||||  |||  | || |||||||||| |||| |||| |||| || |||| |||| ||||||||    
T  4507036 aagatccattgggtcacctgctatcagatttccgttatcagaccaccaaccagttatgtccacaaacc-aacctaatagtgttggtcgtga-ggagtgtg 4507133  T
Q  108 ttaaagagtctcacatc 124  Q
    || ||||||||||||||    
T  4507134 tt-aagagtctcacatc 4507149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 5871741 - 5871691
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgt 108  Q
    |||||||||| ||||||||||| ||||| ||||||| ||||||| ||||||    
T  5871741 catttatgtcaacgaaccaaactcaatagtgctggtcgtgagggggtgtgt 5871691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 28080768 - 28080838
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtca-ctcatcatttatgtccacgaaccaa 77  Q
    |||||| ||||| ||||||||||||| |||| || |||| ||||| | |||||||||||| ||||||||||    
T  28080768 aagatctattgggccacctgctatcaagtttccgctatctggtcaccccatcatttatgttcacgaaccaa 28080838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 30727326 - 30727216
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagag 115  Q
    |||| |||||| ||||||||||| || |||  || ||| || ||||||| ||||| ||| || ||||||| || |||  ||||||| |||||||||||||    
T  30727326 ttgggccaccttctatcaggtttccgctattgggccacccaccatttatatccacaaactaagcccaatagtgttgggcgtgagggggtgtgttaaagag 30727227  T
Q  116 tctcacatcgg 126  Q
    |  ||||||||    
T  30727226 tgacacatcgg 30727216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 36277339 - 36277225
Alignment:
Q  111 aagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatc-agtttgtggggttgtgttaaacccaa 208  Q
    ||||||||||||||||||||   ||  |||||  ||||| |||| |||| || ||||||| ||||||||| || | |||||||||||||||||  |||||    
T  36277339 aagagtctcacatcggacaagacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagtcgattttgtggggttgtgttagtcccaa 36277240  T
Q  209 acacgatttccaaga 223  Q
     ||||||||| ||||    
T  36277239 ccacgatttctaaga 36277225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 43688232 - 43688159
Alignment:
Q  150 ttattagtgaggacaatccttacctcacaaatcagtttgtggggttgtgttaaacccaaacacgatttccaaga 223  Q
    |||| |||| || ||||||||||||| |||  | ||||||||||||||||||  ||||| ||||||||| ||||    
T  43688232 ttataagtgggggcaatccttacctctcaagccggtttgtggggttgtgttaggcccaaccacgatttctaaga 43688159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 1936327 - 1936212
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||||| | |||||| |||||||||| || ||||||  |||  | |||||||||| ||||||||  ||||||| || ||||  ||| |  |||||    
T  1936327 aagatccattgaatcacctgttatcaggtttccgctatcagc-cacctaccatttatgtcaacgaaccatgcccaatagtgttggtcatgaagaggtgtg 1936229  T
Q  108 ttaaagagtctcacatc 124  Q
    |||||||||| ||||||    
T  1936228 ttaaagagtcacacatc 1936212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 14540905 - 14540853
Alignment:
Q  59 atttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    |||||||||||| |||||| ||||||| |||||||  |||||| |||||||||    
T  14540905 atttatgtccacaaaccaagcccaatagtgctggtcatgagggtgtgtgttaa 14540853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 20305415 - 20305467
Alignment:
Q  25 ctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||||||||||||| || |||| || ||| || ||||||||||||||||||||    
T  20305415 ctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaa 20305467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 26239895 - 26239855
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcag 48  Q
    ||||||| |||| |||||||||||||||||| |||||||||    
T  26239895 aagatccgttgggccacctgctatcaggtttccgttatcag 26239855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 17147882 - 17147757
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| || |||||||||  ||||||||||||||||| || ||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||    
T  17147882 cctctccaacatccattgggtcacctgctatcaggtttccgctatcaggtcacccaccatttatgtccacgaaccaagcccaatagtgctggttgtgagg 17147783  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  17147782 gggtgtgtt-aagagtcccacatcgga 17147757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 4868792 - 4868576
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||  ||| |||||||||||||||||| ||||||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| |||||    
T  4868792 aagatccgctgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtg 4868693  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtgttaaacc 205  Q
    || ||||||| |||||||||||    ||  |||||  ||||| |||| |||| || ||||||| |||||||||  | | |||||||||||||||||  ||    
T  4868692 tt-aagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcc 4868594  T
Q  206 caaacacgatttccaaga 223  Q
    ||| ||||||||| ||||    
T  4868593 caaccacgatttctaaga 4868576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 13353298 - 13353425
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||| |||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  13353298 cctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 13353397  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||| |||||||||||    
T  13353398 gggtgtgtt-aagagtcccacatcggaca 13353425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 33796423 - 33796550
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||| |||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  33796423 cctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 33796522  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||| |||||||||||    
T  33796523 gggtgtgtt-aagagtcccacatcggaca 33796550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 12330166 - 12330041
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||||||||||||| ||  ||| || ||| || |||||||||||||||||||| |||||| |||||||| ||||||    
T  12330166 cctctccaagatccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaattatgctggtcgtgagg 12330067  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  12330066 gggtgtgtt-aagagtcccacatcgga 12330041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 20830634 - 20830813
Alignment:
Q  25 ctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatc 124  Q
    ||||||||||||||| | |||| | |||| |||||||||| |||||||||||| ||||||||| ||||| ||||| | || ||||||||||||| |||||    
T  20830634 ctgctatcaggtttttgctatcggatcacccatcatttatttccacgaaccaagcccaataatactggtcgtgagagtgtatgttaaagagtcttacatc 20830733  T
Q  125 ggacaaacaataacctgaacatgtg--ttattagtgaggacaatccttacctcacaaa-tcagtttgtggggttgtgtta 201  Q
    |||||||  || | || ||||||||  |||| |||| || ||||| | |||||||||| | | |||||| ||||||||||    
T  20830734 ggacaaaagatgatctaaacatgtgttttataagtgggggcaatcatcacctcacaaactgattttgtgaggttgtgtta 20830813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 6542923 - 6542805
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||||||  ||| ||||||||||||| ||||||| |||||| || ||||||||||||||||||||  ||||||  | |||| ||||||| |||||    
T  6542923 aagatccattgggtcacttgctatcaggtttccgttatcgggtcacccaccatttatgtccacgaaccaagtccaatatcgttggtcgtgagggtgtgtg 6542824  T
Q  108 ttaaagagtctcacatcgga 127  Q
    || |||||||||||||||||    
T  6542823 tt-aagagtctcacatcgga 6542805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 6311939 - 6312041
Alignment:
Q  28 ctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcgga 127  Q
    ||||| |||||||| ||||||||||  || ||||||| ||||| |||||  ||||||| |||| ||||||||||  ||||||||||||||||||||||||    
T  6311939 ctatcgggttttcgctatcaggtcaaccaccatttatatccacaaaccat-cccaatagtgcttgttgtgaggggatgtgttaaagagtctcacatcgga 6312037  T
Q  128 caaa 131  Q
    ||||    
T  6312038 caaa 6312041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 6400821 - 6400715
Alignment:
Q  22 cacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcac 121  Q
    |||||||||||||||||  | |||| |  ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| | ||||| |||||||||||    
T  6400821 cacctgctatcaggtttctgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggggtgtt-aagagtctcac 6400723  T
Q  122 atcggaca 129  Q
    ||||||||    
T  6400722 atcggaca 6400715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 24554221 - 24554334
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||  || ||||||  ||| || |||||||||| ||||||||| | ||||||||||| ||||| |||||||||    
T  24554221 aagatccattgg-ccacctgctatcaggttaccgctatcagaccacccaccatttatgtcaacgaaccaagctcaataatgctgattgtg-gggagtgtg 24554318  T
Q  108 ttaaagagtctcacatc 124  Q
    || ||||||| ||||||    
T  24554319 tt-aagagtcacacatc 24554334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 34345514 - 34345617
Alignment:
Q  21 ccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctca 120  Q
    ||||||||||||||||||  |||||| |  |||| |||||||||||||||||||||||| ||||| || ||||  |||||| ||||||| ||||||| ||    
T  34345514 ccacctgctatcaggtttcagttatcggaccacttatcatttatgtccacgaaccaaacacaatagtgttggtcatgagggggtgtgtt-aagagtccca 34345612  T
Q  121 catcg 125  Q
    |||||    
T  34345613 catcg 34345617  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 7638833 - 7638759
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||| |||||| |||||| ||||||||||||||||| || |||||| |||| ||||||||||||| |||||||||    
T  7638833 tctccaagatctattggatcacctgctatcaggtttccgctatcagatcacccatcatttatgtctacgaaccaa 7638759  T

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Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 9705133 - 9705241
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagag 115  Q
    |||| |||||||||||||||||| | ||||| || ||| || ||||||||||||  ||||||  |||||| ||||||| ||||||| ||||||| |||||    
T  9705133 ttgggccacctgctatcaggtttccattatcgggccacccaccatttatgtcca--aaccaagtccaatagtgctggtcgtgagggggtgtgtt-aagag 9705229  T
Q  116 tctcacatcgga 127  Q
    || |||||||||    
T  9705230 tcccacatcgga 9705241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 10313899 - 10313964
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatc 124  Q
    ||||||| ||||||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||    
T  10313899 catttatatccacgaactaaactcaatagtgttggttgtgagg-agtgtgttaaagagtctcacatc 10313964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 33494644 - 33494761
Alignment:
Q  9 agatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgt 108  Q
    |||||||||||  ||||||||||||||||| |  |||| || ||| || | ||||||| |||||||||| ||||||| ||||||| |||||   ||||||    
T  33494644 agatccattgggtcacctgctatcaggtttccactatcgggccacccaccgtttatgttcacgaaccaagcccaatagtgctggtcgtgagttggtgtgt 33494743  T
Q  109 taaagagtctcacatcgga 127  Q
    | ||||||| |||||||||    
T  33494744 t-aagagtcccacatcgga 33494761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 32290835 - 32290936
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgtta 110  Q
    |||||| || |||||| ||||||| |||||| |||| || ||| || ||||||||||||| || ||| ||||||||||||||| |||||  | |||||||    
T  32290835 atccatcgggccacctactatcagattttcgctatcgggccacccaccatttatgtccacaaatcaagcccaataatgctggtcgtgagtcaatgtgtta 32290934  T
Q  111 aa 112  Q
    ||    
T  32290935 aa 32290936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 5608993 - 5609100
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||||||||| | ||| | | || |||||| ||||||| ||  |||| ||||||||||||||  | ||||||| |||| ||||| |||| ||    
T  5608993 aagatccattggaccaccagatattatggttccgttattaggtcacccactatttgtgtccacgaaccaagtctaataatgatggtcgtgagagagtatg 5609092  T
Q  108 ttaaagag 115  Q
    ||||||||    
T  5609093 ttaaagag 5609100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 31961040 - 31961162
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||||||||||||||  | ||||  | | | || |||||||||||||| ||||| ||||||| | || || ||||||    
T  31961040 cctctccaagatccattgggccacctgctatcaggtttctgctatcgtgccccccaccatttatgtccacggaccaagcccaatagtactagtcgtgagg 31961139  T
Q  101 gagtgtgttaaagagtctcacatc 124  Q
    |  |||||| ||||||| ||||||    
T  31961140 ggatgtgtt-aagagtcccacatc 31961162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 3680109 - 3680233
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| || |||||| ||  |||||||||| |||||| || |||| |||||  || ||||||||||||| |||||| ||||||| || |||| ||||||    
T  3680109 cctctccaaaatccatcgggtcacctgctattaggtttccgctatcgggtcatccaccatttatgtccacaaaccaagcccaatagtgttggtcgtgagg 3680208  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | | ||||| ||||||| |||||||||    
T  3680209 g-gggtgtt-aagagtcccacatcgga 3680233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 6237687 - 6237617
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaa 78  Q
    ||||||||||||||||| ||||| ||||||| || |||| |  ||| || |||||||||||||||||||||    
T  6237687 aagatccattggaccacttgctaccaggtttccgctatcggaccacccaccatttatgtccacgaaccaaa 6237617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 30392612 - 30392713
Alignment:
Q  49 gtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgt 148  Q
    ||||||||||||||||||||||||| |||  |||||||| || || |||| | | ||||||||| ||||||||| |  |||||  ||||| |||||||||    
T  30392612 gtcactcatcatttatgtccacgaatcaagtccaataatactagtcgtga-gaactgtgttaaaaagtctcacaacacacaaaagataacatgaacatgt 30392710  T
Q  149 gtt 151  Q
    |||    
T  30392711 gtt 30392713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 30256685 - 30256800
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgtta 110  Q
    ||||||||| || | |||||||||||||||| ||||  | ||| |  ||||||||||||||||| || ||||| | || |||| |||| || |||||||     
T  30256685 atccattgggccgcatgctatcaggttttcgatatcgagccacccc-catttatgtccacgaactaagcccaacagtgttggtcgtgatggggtgtgttt 30256783  T
Q  111 aagagtctcacatcgga 127  Q
    ||||||| |||||||||    
T  30256784 aagagtcccacatcgga 30256800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 2736381 - 2736318
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacg 71  Q
    |||||| ||||| ||||||||||| |||||| ||||||| |  ||| |||||||||||||||||    
T  2736381 aagatctattgggccacctgctattaggtttccgttatcggaccacccatcatttatgtccacg 2736318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 33631790 - 33631692
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    |||| |||||| |||||  |||||| ||||||||||  | |||| || ||| || ||||||||||||| |||||| | ||||| ||||||| |||||||    
T  33631790 tctccaagatctattgggtcacctgatatcaggtttctgctatcgggacacccaccatttatgtccactaaccaagctcaatagtgctggtcgtgaggg 33631692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 3157546 - 3157425
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| || ||||||||||||||||||||||||||||||| |||| || ||| || |||||||||||||||||||| ||||||| ||||||| |||||     
T  3157546 cctctccaaaatccattggaccacctgctatcaggttttcgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagt 3157447  T
Q  101 gagtgtgttaaagagtctcacat 123  Q
    | ||||||| |||||||||||||    
T  3157446 gggtgtgtt-aagagtctcacat 3157425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 3157218 - 3157106
Alignment:
Q  14 cattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaag 113  Q
    ||||||||||||||||||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| ||||||| |||    
T  3157218 cattggaccacctgctatcaggtttccgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aag 3157120  T
Q  114 agtctcacatcgga 127  Q
    ||||||||||||||    
T  3157119 agtctcacatcgga 3157106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 11232416 - 11232289
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||| |||||||||| || ||||  ||||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  11232416 cctctccaagatccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 11232317  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||| |||||||||||    
T  11232316 gggtgtgtt-aagagtcccacatcggaca 11232289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 8084224 - 8084352
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||| |||||||||||||||| |||  | |||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  8084224 cctctccaagatccattgggccacatgctatcaggttttcgctattggatcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 8084323  T
Q  101 gagtgtgttaaagagtctcacatcggacaa 130  Q
    | ||||||| ||||||| ||||||| ||||    
T  8084324 gggtgtgtt-aagagtcccacatcgaacaa 8084352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 20094775 - 20094659
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||| |||||||||||||| ||||||| ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| | |||    
T  20094775 aagatccattgggccacctcctatcaggttttcgctatcaggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggcgtg 20094676  T
Q  108 ttaaagagtctcacatcg 125  Q
    || ||||||| |||||||    
T  20094675 tt-aagagtcccacatcg 20094659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 37868570 - 37868392
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||| ||||||| |||| || |||  || ||| || ||||||||| |||||||||| ||||||| ||||||| ||||||    
T  37868570 cctctccaagatccattgggccacccgctatcaagtttccgctattgggccacccaccatttatgtacacgaaccaagcccaatattgctggtcgtgagg 37868471  T
Q  101 gagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaa 179  Q
    | | |||||||||||||  |||||||| |||  ||  |||||||| ||| ||||||||| || ||||||| |||||||||    
T  37868470 g-gggtgttaaagagtcgaacatcggataaatgatggcctgaacacgtgtttattagtgggggcaatcctcacctcacaa 37868392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 10615491 - 10615641
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| ||||||||||| |||||||| |||||||||| || |||| ||||||  |  |||||| ||||||||||||  |||||| |||| || ||||||    
T  10615491 cctctccaagatccattgtaccacctgatatcaggtttccgctatcgggtcaccaactatttatctccacgaaccaagtccaatagtgctagtcgtgagg 10615590  T
Q  101 gagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtgtt 151  Q
    | |||||||||||||||  |||||| |||||  || || ||||||||||||    
T  10615591 gtgtgtgttaaagagtcctacatcgaacaaaatatgacatgaacatgtgtt 10615641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 37867998 - 37867876
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattag 156  Q
    ||||||||||||||||||||  |||||| || |||| ||||||| |||||||||||||||| ||||||||||||  || ||||||||| ||| |||||||    
T  37867998 catttatgtccacgaaccaaggccaatagtgttggtcgtgagggtgtgtgttaaagagtctaacatcggacaaatgatgacctgaacacgtgtttattag 37867899  T
Q  157 tgaggacaatccttacctcacaa 179  Q
    || || |||| || |||||||||    
T  37867898 tgggggcaattctcacctcacaa 37867876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 39052916 - 39052791
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||| | || ||||||||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| || |||| ||||||    
T  39052916 cctctccaagatccatttggccccctgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagg 39052817  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  39052816 gggtgtgtt-aagagtcccacatcgga 39052791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 18004316 - 18004211
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||||||||||||| || |||| || ||| || |||||||||||||||||||| || |||| ||||||| ||||||    
T  18004316 cctctccaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcctaatagtgctggtcgtgagg 18004217  T
Q  101 gagtgt 106  Q
    | ||||    
T  18004216 gggtgt 18004211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 20301365 - 20301468
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| || |||| |  ||| || |||||||||| ||||||||| ||||||| ||||||| ||||||| |||||    
T  20301365 aagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgctggtcgtgagggggtgtg 20301464  T
Q  108 ttaa 111  Q
    ||||    
T  20301465 ttaa 20301468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 21087997 - 21088100
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| || |||| |  ||| || |||||||||| ||||||||| ||||||| ||||||| ||||||| |||||    
T  21087997 aagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgctggtcgtgagggggtgtg 21088096  T
Q  108 ttaa 111  Q
    ||||    
T  21088097 ttaa 21088100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 39052759 - 39052637
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||| ||| | |||||||||||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| || |||| ||||||    
T  39052759 cctctccaagatcaatttggccacctgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagg 39052660  T
Q  101 gagtgtgttaaagagtctcacatc 124  Q
    | ||||||| ||||||| ||||||    
T  39052659 gggtgtgtt-aagagtcccacatc 39052637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 37868248 - 37868116
Alignment:
Q  48 ggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaacaataacctgaacatg 147  Q
    |||||| || ||||||||||||||| |||| ||||||| || |||| ||||||| |||||||||||||||| ||||| ||||||  ||  |||||||| |    
T  37868248 ggtcacccaccatttatgtccacgagccaagcccaatagtgttggtcgtgagggtgtgtgttaaagagtctaacatcagacaaatgatggcctgaacacg 37868149  T
Q  148 tg-ttattagtgaggacaatccttacctcacaa 179  Q
    || ||||||||| || ||||||| ||| |||||    
T  37868148 tgtttattagtgggggcaatcctcaccacacaa 37868116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 41790762 - 41790865
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| || ||||  | ||| || |||||||||||| ||||||| ||||| | ||||||| ||||||| |||||    
T  41790762 aagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccatgaaccaagcccaagagtgctggtcgtgagggggtgtg 41790861  T
Q  108 ttaa 111  Q
    ||||    
T  41790862 ttaa 41790865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 35683001 - 35682903
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    |||| |||||||||||| ||||||||||| |||||| || |||| || ||| || |||||||||||||||||||| | ||||| ||||||| |||||||    
T  35683001 tctccaagatccattgggccacctgctattaggtttccgctatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgaggg 35682903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 8716219 - 8716392
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||   ||| |||||| |||||| || |||| ||||||  | ||||||||||||||||| ||||| |||| |||||||  ||| || |||||    
T  8716219 aagatccattgagtcacatgctattaggtttccgctatcgggtcaccgaccatttatgtccacgaacaaaacctaatactgctggtcatgacggggtgtg 8716318  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaa 180  Q
    |||||||| | ||| || ||||||  || || |||||||| | |||| |||| ||||||| |||||||||||||    
T  8716319 ttaaagagacacacttcagacaaaagatgacatgaacatgagtttataagtggggacaattcttacctcacaaa 8716392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 31197719 - 31197816
Alignment:
Q  9 agatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgt 106  Q
    ||||||||||| |||||||||||||||||| || |||| |  ||| || |||||||||||||||||||| | ||||| ||||| ||||||||| ||||    
T  31197719 agatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagctcaatagtgctgattgtgagggggtgt 31197816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 5676023 - 5675944
Alignment:
Q  21 ccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    ||||||||||||||||||||| |||  |||||| || |||||||||| ||||||||| ||||||| ||||||| ||||||    
T  5676023 ccacctgctatcaggttttcgatattgggtcacccaccatttatgtctacgaaccaagcccaatactgctggtcgtgagg 5675944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5932171 - 5932049
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| ||||||||||||||||||| |||||| |||| ||||||| || ||| || |||||||||| || |||||| | ||||| ||||||| ||||      
T  5932171 cctctccaagatccattggaccacctactatcacgtttccgttatcgggccacccaccatttatgtcgacaaaccaagcgcaatagtgctggtcgtgaaa 5932072  T
Q  101 gagtgtgttaaagagtctcacatc 124  Q
    | ||||||| ||||||| ||||||    
T  5932071 gggtgtgtt-aagagtcccacatc 5932049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 5675936 - 5675831
Alignment:
Q  21 ccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctca 120  Q
    ||||||||||||| ||||||| |||| |||||| || ||||||||||||||||||||  |||||| ||||||| | ||||  ||||| |||||||||  |    
T  5675936 ccacctgctatcaagttttcgctatcgggtcacccaccatttatgtccacgaaccaagtccaatagtgctggtcgagaggaggtgtg-taaagagtccta 5675838  T
Q  121 catcgga 127  Q
    |||||||    
T  5675837 catcgga 5675831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 10615101 - 10615012
Alignment:
Q  62 tatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtgtt 151  Q
    ||||| ||||||||||  |||||| || |||||||||||| ||||||||||||||| ||||||||| |||  || || ||||||||||||    
T  10615101 tatgttcacgaaccaagtccaatagtgttggttgtgagggtgtgtgttaaagagtcccacatcggataaaatatgacatgaacatgtgtt 10615012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 12688176 - 12688367
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| ||||||||||||||||||    |||  || ||| || ||||||||||||||||| || ||||||| || ||||  |||||| |||||    
T  12688176 aagatccattgggccacctgctatcaggtttcttctattgggccacccaccatttatgtccacgaactaagcccaatagtgatggtcatgagggggtgtg 12688275  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtg 198  Q
     | ||||||| ||||| ||| | |  || ||||||  ||||| |||| |||| || |||||||||||||||||  ||| ||||||||||||||    
T  12688276 at-aagagtcccacattggatagaagatgacctgacaatgtgtttataagtgggggcaatccttacctcacaagccagttttgtggggttgtg 12688367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 15042870 - 15042795
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    ||||| ||||| |||||| |||||||||||||||||| || ||||||| ||| || | ||||||||||||||||||    
T  15042870 ctctccaagattcattgggccacctgctatcaggtttccgctatcaggccacccaccgtttatgtccacgaaccaa 15042795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 31079731 - 31079660
Alignment:
Q  55 catcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcgg 126  Q
    ||||||||||||||||||||||| |||||||  | |||| ||||||  ||||||||||||||| ||||||||    
T  31079731 catcatttatgtccacgaaccaagcccaatagggatggtcgtgaggaggtgtgttaaagagtcccacatcgg 31079660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 39960074 - 39960178
Alignment:
Q  21 ccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctca 120  Q
    |||||||||||||||||| || ||||  |  || || |||||||||||||||||||| ||||||| ||||||| ||||||| | ||||| ||||||| ||    
T  39960074 ccacctgctatcaggtttccgctatcgagctacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggg-gggtgtt-aagagtccca 39960171  T
Q  121 catcgga 127  Q
    |||||||    
T  39960172 catcgga 39960178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 8849336 - 8849409
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaa 131  Q
    ||||||| || | ||||||||||||||| || |||| ||||||| |||||||||||||||||| ||| ||||||    
T  8849336 catttatatctatgaaccaaacccaatagtgttggtcgtgagggggtgtgttaaagagtctcaaatcagacaaa 8849409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 7669523 - 7669625
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||  |||||||||||||||||| |  |||| |  ||| || |||||||||||||||||||| | | ||| ||||||| ||||||| |||||    
T  7669523 aagatccattgagccacctgctatcaggtttccactatcggaccacccaccatttatgtccacgaaccaagctc-atagtgctggtcgtgagggtgtgtg 7669621  T
Q  108 ttaa 111  Q
    ||||    
T  7669622 ttaa 7669625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10614926 - 10614839
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatg 88  Q
    |||||| ||||||||||||||||||||| |||| ||||| | |||| |  ||  || ||||| |||||||||||||| ||||||||||    
T  10614926 cctctccaagatccattggaccacctgcaatcaagtttttgctatcggaacatccaccatttgtgtccacgaaccaagcccaataatg 10614839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 8466703 - 8466626
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaata 85  Q
    |||||||||||| |||||||||||||||||| || ||||| | ||| || ||||||| | |||| ||||| |||||||    
T  8466703 aagatccattgggccacctgctatcaggtttccgctatcaagccacccaccatttatatgcacgcaccaagcccaata 8466626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 8715798 - 8715844
Alignment:
Q  57 tcatttatgtccacgaaccaaacccaataatgctggttgtgagggag 103  Q
    ||||||||||||| ||||||||||||||| |||||||  ||||||||    
T  8715798 tcatttatgtccaggaaccaaacccaatagtgctggtcatgagggag 8715844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 34842962 - 34843012
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgt 66  Q
    |||| ||||||| |||||||||||||||||| || ||| ||||||||||||    
T  34842962 ttgggccacctgttatcaggttttcgttatcgggccacccatcatttatgt 34843012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 37868701 - 37868627
Alignment:
Q  106 tgttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaa 179  Q
    |||||||||||| |||||||||||||  ||  |||||||||||| |||||| || || ||||||| |||||||||    
T  37868701 tgttaaagagtcccacatcggacaaatgatggcctgaacatgtgtttattaatgggggcaatcctcacctcacaa 37868627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 7289415 - 7289346
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    ||||| |||| | ||||||||||||||||||||| |||||   ||| || |||||||||||| |||||||    
T  7289415 aagattcatttggccacctgctatcaggttttcgctatcaaaccacccaccatttatgtccaggaaccaa 7289346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 16050040 - 16050105
Alignment:
Q  150 ttattagtgaggacaatccttacctcacaaatcagttt-gtggggttgtgttaaacccaaacacga 214  Q
    |||| ||||| | ||||||| ||||||||| ||||||| |||||||||||||| |||||| |||||    
T  16050040 ttataagtgaaggcaatcctcacctcacaagtcagttttgtggggttgtgttagacccaaccacga 16050105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 29006010 - 29006074
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacat 123  Q
    |||||||||||| || | || ||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  29006010 catttatgtccatgagcgaagcccaatagtgctggtcgtgagg-agtgtattaaagagtctcacat 29006074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 29907918 - 29907865
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtcca 69  Q
    |||| |||||||||||||||||||||||||| |  ||| || ||||||||||||    
T  29907918 ttgggccacctgctatcaggttttcgttatcggtccacccaccatttatgtcca 29907865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 31079555 - 31079382
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||||||||||| || |||||| ||| |  |||| || ||| || |||||||||  ||||||||| |||||||||| |||  |||| |   | ||    
T  31079555 aagatccattggaccacatgttatcagatttccactatcgggccacccaccatttatgtgaacgaaccaagcccaataatgttggcggtgatgagctatg 31079456  T
Q  108 ttaaagagtctcacatcggacaaaca-ataacctgaacatgtg-ttattagtgaggacaatccttacctcacaa 179  Q
    |||||| ||| ||||||| | ||| | ||| ||||||||| || |||  ||||||| ||||||| |||||||||    
T  31079455 ttaaagtgtcccacatcgaaaaaaaatatagcctgaacatatgtttagaagtgagggcaatcctcacctcacaa 31079382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 422425 - 422314
Alignment:
Q  16 ttggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgag-ggagtgtgttaaaga 114  Q
    |||| |||||||||||||||||| || | || || ||| || ||||| ||||||||||||||   |||||||| ||||  |||| || |||||||||| |    
T  422425 ttgggccacctgctatcaggtttccgctctcgggccacccaccatttttgtccacgaaccaagttcaataatgttggtcatgagaggggtgtgttaaa-a 422327  T
Q  115 gtctcacatcgga 127  Q
    ||| |||||||||    
T  422326 gtcccacatcgga 422314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 5589904 - 5589852
Alignment:
Q  59 atttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    ||||||||||||||||||| |||||||||||| || ||||  | |||||||||    
T  5589904 atttatgtccacgaaccaagcccaataatgctagtcgtgaacgggtgtgttaa 5589852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 6463076 - 6463124
Alignment:
Q  21 ccacctgctatcaggttttcgttatcaggtcactcatcatttatgtcca 69  Q
    |||||| |||| || |||||| |||||||||||||||||||||| ||||    
T  6463076 ccaccttctattagtttttcgctatcaggtcactcatcatttatatcca 6463124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2013 - 2140
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||| |||||||||| || ||||  ||||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  2013 cctctccaagatccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 2112  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||| |||||||||||    
T  2113 gggtgtgtt-aagagtcccacatcggaca 2140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 12376652 - 12376510
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| ||||||||||||||||| | | ||||||| |||  | |||||||||||||||||||| ||||||| || |||| ||||||| |||||    
T  12376652 aagatccattgggccacctgctatcaggttct-gctatcaggccacctaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggtgtgtg 12376554  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaacatgtgtt 151  Q
    |||||||||||||||||  |||||  || || ||||||||||||    
T  12376553 ttaaagagtctcacatcaaacaaaagatgacatgaacatgtgtt 12376510  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 35772133 - 35772349
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| ||| |||||||||||||| || |||| || ||| || |||||||||||||||||||| ||||||| ||| ||||||||| | |||||    
T  35772133 aagatccattgggccatctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgccggttgtgagcgggtgtg 35772232  T
Q  108 ttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtgttaaacc 205  Q
    || ||||||| ||||||||| |    ||  |||||  ||||| |||| |||| || |||||||||||||| ||  | | |||||||||||||||||  ||    
T  35772233 tt-aagagtcccacatcggataggagatggcctgacaatgtgtttataagtgggggcaatccttacctcagaagccggttttgtggggttgtgttaggcc 35772331  T
Q  206 caaacacgatttccaaga 223  Q
    ||| ||||||||| ||||    
T  35772332 caaccacgatttctaaga 35772349  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25145707 - 25145484
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||| ||||  |||||||||||||||||| ||||||| |  ||| || |||| ||||||||||| ||| | ||||| ||||||| ||||||    
T  25145707 cctctccaagatctattgacccacctgctatcaggtttccgttatcggaccacccaccattaatgtccacgaatcaagctcaatagtgctggtcgtgagg 25145608  T
Q  101 gagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtg 198  Q
    | ||||||| ||||||||||||||||| |    ||   ||||  ||||| ||||||||| || ||||||| ||||||||| || | |||||| |||||||    
T  25145607 gggtgtgtt-aagagtctcacatcggataggtgatggtctgacaatgtgtttattagtgggggcaatcctcacctcacaagtcggttttgtgaggttgtg 25145509  T
Q  199 ttaaacccaaacacgatttccaaga 223  Q
    ||| |||||| ||||||||| ||||    
T  25145508 ttagacccaaccacgatttctaaga 25145484  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26177005 - 26177228
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| |||||||||||||| ||| || |||| |  ||| || ||||||| ||||||||||||  |||||| ||||||| |||| |    
T  26177005 cctctccaagatccattgggccacctgctatcagatttccgctatcggaccacccaccatttatatccacgaaccaagtccaatagtgctggtcgtgacg 26177104  T
Q  101 gagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtg-ttattagtgaggacaatccttacctcacaaatcag-tttgtggggttgtg 198  Q
    | ||||||| ||||||| |||||||||||    || ||||||  | ||| |||| |||| || ||||||| |||||| ||| ||| ||||||||||||||    
T  26177105 gggtgtgtt-aagagtcccacatcggacaggacatgacctgacaacgtgtttataagtgggggcaatcctcacctcaaaaaccagttttgtggggttgtg 26177203  T
Q  199 ttaaacccaaacacgatttccaaga 223  Q
    |||  ||||| ||||||||| ||||    
T  26177204 ttaggcccaaccacgatttctaaga 26177228  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 25713255 - 25713380
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||| ||||||||||||| |||| || |||| || ||| || |||||||||||||||||||| ||||||| || |||| ||||||    
T  25713255 cctctccaagatccattgggccacctgctatcaagtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagg 25713354  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | | ||||| ||||||| |||||||||    
T  25713355 gggggtgtt-aagagtcccacatcgga 25713380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 4112762 - 4112635
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||    ||| || |||||||||| ||||||||| ||||||| || |||| ||||||    
T  4112762 cctctccaagatccattggaccacctgctatcaggtttccgctatcgaaccacccaccatttatgtcaacgaaccaagcccaatagtgttggtcgtgagg 4112663  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | | ||||| ||||||| |||||||||||    
T  4112662 gggggtgtt-aagagtcccacatcggaca 4112635  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 12325498 - 12325396
Alignment:
Q  21 ccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctca 120  Q
    ||||||||||||||||| | |||||| || |||  | |||||||||||||||||||| ||||||| || |||| ||||||| ||||||||||||||||||    
T  12325498 ccacctgctatcaggttct-gttatcgggccacctaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggtgtgtgttaaagagtctca 12325400  T
Q  121 catc 124  Q
    ||||    
T  12325399 catc 12325396  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 34076521 - 34076641
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgtt- 109  Q
    |||||||||||||||||||||  ||||| ||||||  || ||| || |||||||||||||||||||| ||  ||||||||| ||||| |||||||||||     
T  34076521 atccattggaccacctgctattcggttt-cgttattgggccacacaccatttatgtccacgaaccaagcctgataatgctgattgtgggggagtgtgtta 34076619  T
Q  110 aaagagtctcacatcggacaaa 131  Q
    |||||||||| ||||| |||||    
T  34076620 aaagagtctctcatcgaacaaa 34076641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 369735 - 369839
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcagg-tcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgt 106  Q
    ||||||||||||| || |||||||||||||| || |||| || |||| || |||||||||||||||||||| ||||||| ||||||| |||||||  |||    
T  369735 aagatccattggatcagctgctatcaggtttccgctatcggggtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggggatgt 369834  T
Q  107 gttaa 111  Q
    |||||    
T  369835 gttaa 369839  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 16163030 - 16163154
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||| ||| |||||||||||||||||| || |||| || |||  | ||||||||||||||| |||| ||| ||| ||||||| ||||||    
T  16163030 cctctccaagatccaatgggccacctgctatcaggtttccgctatcgggccacctaccatttatgtccacgagccaagccc-atagtgctggtcgtgagg 16163128  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  16163129 gtgtgtgtt-aagagtcccacatcgga 16163154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 38668222 - 38668347
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| | ||||||||||  |||||| ||||||||||  | |||| ||||||  |||||||||||||| ||||||| ||||||| ||||||| |||||     
T  38668222 cctctccatgatccattgggtcacctgttatcaggtttctgctatcgggtcacctatcatttatgtccatgaaccaagcccaatattgctggtcgtgagt 38668321  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  38668322 gggtgtgtt-aagagtcccacatcgga 38668347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 17412436 - 17412540
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||| || ||| ||||||||| |||||||||||  | ||| ||||||||||||||||||| ||| ||||||| || |||| |||| || |||||    
T  17412436 aagatccattagatcacttgctatcagattttcgttatcgagccacccatcatttatgtccacgaatcaagcccaatagtgttggtcgtgatggggtgtg 17412535  T
Q  108 ttaaa 112  Q
    |||||    
T  17412536 ttaaa 17412540  T

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Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 2859607 - 2859489
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||| |||| ||||||  | |||| || ||| || |||||||||||||||||||| ||||||| ||||||| ||||||| | |||    
T  2859607 aagatccattgggccaccttctattaggtttctgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggggtg 2859508  T
Q  108 ttaaagagtctcacatcgga 127  Q
     | ||||||| |||||||||    
T  2859507 at-aagagtcccacatcgga 2859489  T

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Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 4112993 - 4112868
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||  |||||  ||||||||||| || |||  |  ||| || |||||||||||||||||||| | ||||| ||||||| ||||||    
T  4112993 cctctccaagatccattgagccaccatctatcaggtttccgctattggaccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgagg 4112894  T
Q  101 gagtgtgttaaagagtctcacatcgga 127  Q
    | ||||||| ||||||| |||||||||    
T  4112893 gggtgtgtt-aagagtcccacatcgga 4112868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 4098383 - 4098290
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    |||||||||||| |||||||| |||||||||  | |||| || ||| || | |||||||||||||||||| |||||||||| |||| |||||||    
T  4098383 aagatccattgggccacctgcaatcaggtttctgctatcgggccacccaccctttatgtccacgaaccaagcccaataatgttggtcgtgaggg 4098290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 8870854 - 8870786
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcgga 127  Q
    |||||||||||||||||||||||||||  ||||||| ||||||| ||||||| ||||||| |||||||||    
T  8870854 catttatgtccacgaaccaaacccaattgtgctggtcgtgagggggtgtgtt-aagagtcccacatcgga 8870786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 34264702 - 34264586
Alignment:
Q  7 aaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgt 106  Q
    |||||||||||  ||||| ||||||||||||| || |||| |||||  || ||||||| || ||||||||| | ||||| ||||||| ||||||| ||||    
T  34264702 aaagatccattaaaccacatgctatcaggtttccgctatcgggtcaaccaccatttatatcgacgaaccaagcacaatagtgctggtcgtgagggggtgt 34264603  T
Q  107 gttaaagagtctcacatc 124  Q
    ||| |||| |||||||||    
T  34264602 gtt-aagaatctcacatc 34264586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 39348328 - 39348216
Alignment:
Q  12 tccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    |||||||| |||||||||||||||||| |  |||| |  ||| || |||||||||||||||||||| ||||||| ||||||| |||| || |||||   |    
T  39348328 tccattgggccacctgctatcaggtttccactatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgacggggtgtg---a 39348232  T
Q  112 agagtctcacatcgga 127  Q
    |||||| |||||||||    
T  39348231 agagtcccacatcgga 39348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 7307825 - 7307944
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||||||  |  |||||||||||||| || |||  |  ||| || ||||||||||||||||||||| |||||| || |||| ||||||| ||||     
T  7307825 aagatccattgggtcgtctgctatcaggtttccgctattggaccacccaccatttatgtccacgaaccaaatccaatagtgttggtcgtgagggggtgta 7307924  T
Q  108 ttaaagagtctcacatcggac 128  Q
    || ||||||||||||||||||    
T  7307925 tt-aagagtctcacatcggac 7307944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 27413444 - 27413567
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||| ||| ||||||||| |||||| ||| || |||| || ||| || |||||||||||||||| ||| ||||||| || |||| |||||     
T  27413444 cctctccaagatctattagaccacctgttatcagatttccgctatcgggccacccaccatttatgtccacgaatcaagcccaatagtgttggtcgtgaga 27413543  T
Q  101 gagtgtgttaaagagtctcacatcg 125  Q
    | |||||||||| |||| |||||||    
T  27413544 gggtgtgttaaa-agtcccacatcg 27413567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 38733249 - 38733369
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    ||||| ||||||||||||||||||||||||||||||| || ||||    ||| || ||||||| || |||||| || ||||||| ||||||| |||| |     
T  38733249 ctctccaagatccattggaccacctgctatcaggtttccgctatc----cacccaccatttatatctacgaactaagcccaatagtgctggtcgtgaaga 38733344  T
Q  102 agtgtgttaaagagtctcacatcgga 127  Q
     ||||||| ||||||| |||||||||    
T  38733345 ggtgtgtt-aagagtcccacatcgga 38733369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 51460429 - 51460346
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaat 84  Q
    |||||| |||||||||||| |||||||||||||||||| || |||| ||  || || ||||| |||||||||||||||| ||||    
T  51460429 cctctccaagatccattgggccacctgctatcaggtttccgctatcgggcgacccaccatttgtgtccacgaaccaaactcaat 51460346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 52961451 - 52961554
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    |||||||||||| |||||||||||||||||| || |||| || ||| || || |||||| |||||| ||| | ||||| |||| || ||||||| |||||    
T  52961451 aagatccattgggccacctgctatcaggtttccgctatcgggccacccaccagttatgtacacgaaacaagctcaatagtgctagtcgtgagggggtgtg 52961550  T
Q  108 ttaa 111  Q
    ||||    
T  52961551 ttaa 52961554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 9146718 - 9146575
Alignment:
Q  59 atttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcggacaaacaataacctgaacatgtgt-tattagt 157  Q
    ||||||||||||||||||| | ||||| |||| || ||||||| ||||||| | ||||| |||||||||||||  ||   |||||||||||| ||| | |    
T  9146718 atttatgtccacgaaccaagctcaatagtgctagtcgtgaggg-gtgtgttcacgagtcccacatcggacaaaagatggtctgaacatgtgtatataact 9146620  T
Q  158 gaggacaatccttacctcacaaatcag-tttgtggggttgtgtta 201  Q
    | || ||||||| |||||||||| | | ||||| |||||||||||    
T  9146619 gggggcaatcctcacctcacaaaacggttttgttgggttgtgtta 9146575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30369932 - 30370007
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaacca 76  Q
    |||||| ||||||||||||  ||||||||||||||||| |  |||| || ||| || |||||||||||||||||||    
T  30369932 cctctccaagatccattgggtcacctgctatcaggtttccactatcgggccacccaccatttatgtccacgaacca 30370007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 8223502 - 8223412
Alignment:
Q  33 aggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacat 123  Q
    ||||||||||||||  ||||| ||  |||||| |||| | ||||| ||||||| || ||| |||||||| ||||||||||||| |||||||    
T  8223502 aggttttcgttatcgagtcacccactatttatatccatgcaccaagcccaatagtgttgggtgtgagggcgtgtgttaaagagcctcacat 8223412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 9146848 - 9146774
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||| |||||||||||||||| |||| || |||||  || |||| |||||| || ||||||||||||||||||||    
T  9146848 tctccaagatccattggaccaactgcaataaggttaccgctatcgggtcacccaccatttatgtccacgaaccaa 9146774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 39100453 - 39100527
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaata 85  Q
    |||||||||  || |||||||||||||||  ||||| |||||| ||  ||||||||||||||| |||||||||||    
T  39100453 atccattgggtcatctgctatcaggtttttattatcgggtcacccactatttatgtccacgaatcaaacccaata 39100527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 7653395 - 7653448
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaa 111  Q
    ||||||||| |||||||||||| ||||| || |||| |||||||||||||||||    
T  7653395 catttatgtacacgaaccaaacgcaatagtgttggtcgtgagggagtgtgttaa 7653448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 51459994 - 51459927
Alignment:
Q  58 catttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaagagtctcacatcgga 127  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||||| |||||||||    
T  51459994 catttatgtccacgaa-caaacccaattgtgctggtcgtgagggtgtgtgtt-aagagtcccacatcgga 51459927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 17208658 - 17208773
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||| |||  ||| |||||||||||||| || |||| || ||| || ||||||| |||||  ||||| ||||||| || |||  ||||||| |||||    
T  17208658 aagatcccttgagccatctgctatcaggtttccgctatcgggccacccaccatttatatccacccaccaagcccaatagtgttgggcgtgagggggtgtg 17208757  T
Q  108 ttaaagagtctcacat 123  Q
    | ||||| ||||||||    
T  17208758 tgaaagaatctcacat 17208773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 26229672 - 26229739
Alignment:
Q  10 gatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||||||||  |||| || ||||||| ||||| ||||| ||||| || ||||||||||||||||||||    
T  26229672 gatccattgagccacttgttatcaggatttcgctatcaagtcacccaccatttatgtccacgaaccaa 26229739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 31496351 - 31496248
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||||||||||||||||||||||||  || |||| |  ||| || ||||||||| ||| || ||| | || || ||||||| |||| || |||||    
T  31496351 aagatccattggaccacctgctatcaggttcccgctatcggaccacccaccatttatgtgcactaatcaagctcagtagtgctggtcgtgaaggggtgtg 31496252  T
Q  108 ttaa 111  Q
    ||||    
T  31496251 ttaa 31496248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 52676489 - 52676374
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtg 107  Q
    ||||||||  || |||||| ||||||| ||| ||  |||||| ||| |||||||||| |||||| ||||||||||||| || ||    |||||| | |||    
T  52676489 aagatccaccgggccacctactatcagatttccgcaatcaggccacccatcatttatatccacgcaccaaacccaatagtgatgagcatgagggggggtg 52676390  T
Q  108 ttaaagagtctcacat 123  Q
    |||||||||| |||||    
T  52676389 ttaaagagtcccacat 52676374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 26173433 - 26173343
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggg 101  Q
    |||||| ||||||||||||||||||||| || |||| |  | | || ||||||||||||||||| || | ||||  ||||||| |||||||    
T  26173433 atccatcggaccacctgctatcaggtttccgctatcggaccccccaccatttatgtccacgaactaagctcaattgtgctggtcgtgaggg 26173343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 33156838 - 33156915
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaata 85  Q
    ||||||| ||||  ||||||||||||||||| || |||| || ||  || |||||||||||||||| ||| |||||||    
T  33156838 aagatccgttggttcacctgctatcaggtttccgctatcgggccatccaccatttatgtccacgaatcaagcccaata 33156915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 5741 - 5633
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||  |||||||||||||||||| || |||| |  ||| || |||||||||||||||||||| ||||||| ||||||| ||||||    
T  5741 cctctccaagatccattgagccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagg 5642  T
Q  101 gagtgtgtt 109  Q
    | |||||||    
T  5641 gggtgtgtt 5633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 14502 - 14612
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcg-ttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    ||||| ||||||||||||||||||||||||||||||| ||  |||| |||||| ||  ||||||||||| ||||||| ||||||| || |||| |||| |    
T  14502 ctctccaagatccattggaccacctgctatcaggtttccgcctatcgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtgatg 14601  T
Q  101 gagtgtgttaa 111  Q
    | |||||||||    
T  14602 gggtgtgttaa 14612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 10836 - 10946
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcg-ttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    ||||| ||||||||||||||||||||||||||||||| ||  |||  |||||| ||  ||||||||||| ||||||| ||||||| || |||| |||| |    
T  10836 ctctccaagatccattggaccacctgctatcaggtttccgcctattgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtgatg 10935  T
Q  101 gagtgtgttaa 111  Q
    | |||||||||    
T  10936 gggtgtgttaa 10946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 2603 - 2716
Alignment:
Q  13 ccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagggagtgtgttaaa 112  Q
    |||||| ||||| ||||||||||||| || |||| || ||| |  |||||||||| |||||||||||| |||| ||||| | ||||||| ||||||| ||    
T  2603 ccattgaaccacatgctatcaggtttccgctatcgggccaccccccatttatgtctacgaaccaaacctaatagtgctgatcgtgagggggtgtgtt-aa 2701  T
Q  113 gagtctcacatcgga 127  Q
    ||||| |||||||||    
T  2702 gagtcccacatcgga 2716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 13195 - 13305
Alignment:
Q  2 ctctcaaagatccattggaccacctgctatcaggttttcg-ttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    ||||| ||||||||||||||||||||||||||||||| ||  |||  |||||| ||  ||||||||||| ||||||| ||||||| || |||| |||| |    
T  13195 ctctccaagatccattggaccacctgctatcaggtttccgcctattgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtgatg 13294  T
Q  101 gagtgtgttaa 111  Q
    | |||||||||    
T  13295 gggtgtgttaa 13305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 5762 - 5862
Alignment:
Q  11 atccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaaccc-aataatgctggttgtgagggagtgtgtt 109  Q
    ||||||||| |||||||||||||||||| |||||||   |||| || | |||||| ||||||||||| ||| |||||||||||| ||||||| |||||||    
T  5762 atccattgggccacctgctatcaggtttccgttatcgaatcacccaccgtttatgcccacgaaccaagcccaaataatgctggtcgtgaggg-gtgtgtt 5860  T
Q  110 aa 111  Q
    ||    
T  5861 aa 5862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 81939 - 82065
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| |||||||||||||| ||||| |||||||||| |   |||  | ||| || |||||||||||| ||||||| ||||||| ||||||| ||||||    
T  81939 cctctccaagatccattggactacctgttatcaggtttccac-atcgagccacgcaccatttatgtccatgaaccaagcccaatagtgctggtcgtgagg 82037  T
Q  101 gagtgtgttaaagagtctcacatcggaca 129  Q
    | ||||||| ||||||| |||||| ||||    
T  82038 gggtgtgtt-aagagtcccacatcagaca 82065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 51372 - 51481
Alignment:
Q  3 tctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgaggga 102  Q
    |||| ||||||||||||  | |||||||||||||||    |||| || |||  ||||||||||| |||||||||| ||||||| || ||||||||||||     
T  51372 tctccaagatccattgggtctcctgctatcaggtttctactatcgggccacctatcatttatgttcacgaaccaagcccaatagtgttggttgtgagggg 51471  T
Q  103 gtgtgttaaa 112  Q
     |||||||||    
T  51472 atgtgttaaa 51481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 41193 - 41063
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaataatgctggttgtgagg 100  Q
    |||||| ||||| |||||| ||||||||||||| |||| || ||||    ||| ||  ||||||| |||||||| |||| || || || ||||||||| |    
T  41193 cctctccaagattcattgggccacctgctatcaagtttgcgctatcgaaccacccactatttatgcccacgaactaaactcagtagtgttggttgtgaag 41094  T
Q  101 gagtgtgttaaagagtctcacatcggacaaa 131  Q
    || ||||||||||| || ||||| |||||||    
T  41093 gattgtgttaaagaatcccacattggacaaa 41063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3942 - 4011
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccac 70  Q
    |||||| |||||||| ||| |||||||||||||||||| || |||| || ||| |||||||| |||||||    
T  3942 cctctccaagatccactgggccacctgctatcaggtttccgctatcgggccacccatcatttgtgtccac 4011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4586 - 4655
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccac 70  Q
    |||||| |||||||| ||| |||||||||||||||||| || |||| || ||| |||||||| |||||||    
T  4586 cctctccaagatccactgggccacctgctatcaggtttccgctatcgggccacccatcatttgtgtccac 4655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 5733 - 5802
Alignment:
Q  8 aagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaa 77  Q
    |||||| |||||  ||||||||||||| |||||| ||||  | |||  ||||||||||||||||||||||    
T  5733 aagatctattgggtcacctgctatcagattttcgctatcgagccacctatcatttatgtccacgaaccaa 5802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 14400 - 14484
Alignment:
Q  1 cctctcaaagatccattggaccacctgctatcaggttttcgttatcaggtcactcatcatttatgtccacgaaccaaacccaata 85  Q
    |||||| |||||||||||| |||  || |||||||||| || |||| || |||  | |||||||||||||||| ||| |||||||    
T  14400 cctctccaagatccattgggccatatgttatcaggtttccgctatcgggccacctaccatttatgtccacgaatcaagcccaata 14484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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