View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5158-Insertion-1 (Length: 505)
Name: NF5158-Insertion-1
Description: NF5158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5158-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Original strand, 36867254 - 36867751
Alignment:
| Q |
8 |
gagatagctagttgagttgcttactatataagtagttctatcatgattcattatgtaactcgttttatttcgtgttaatacgattttaatttttctcatt |
107 |
Q |
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| T |
36867254 |
gagatagctggttgagttgcttactatataagtagttctatcatgattcattatgtaactcgttttatttcgtgttaatacgattttaatttttctcatt |
36867353 |
T |
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| Q |
108 |
aatctaattcatcgcaaccattctctcaatcctttcctttatatgggaactgcagttgttccaacttccaacagattggtataacatattccagttcgat |
207 |
Q |
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| T |
36867354 |
aatctaattcagcacaaccattctctcaatcctttcctttatatgggaactgcagttgttccaacttccaacagattggtataacatattccagttcgat |
36867453 |
T |
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| Q |
208 |
taatccattaatctaaaagatcaagggaaagttcaaacgcaacctcaaataaattctttgcatatgctcgtgttcaaaggagacaattatgattagtggc |
307 |
Q |
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| T |
36867454 |
taatccattaatctaaaagatcaagggaaagttcaaacgcaacctcaaataaattctttgcatatgctcgtgttcaaaggagacaattatgattagtggt |
36867553 |
T |
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| Q |
308 |
atgcctaaatgaaagtgaatgatggttgcaaactacggtgcaaaaacctgtgcatcgtgagttcaagaaaagatgcatatggattgttattgatccatta |
407 |
Q |
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| T |
36867554 |
gtgcctaaatgaaagtgaatgatggttgcaaactacggcgcaaaaacctgtgcatcgtgagttcaagaaaagatgcatatggattgttattgatccatta |
36867653 |
T |
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| Q |
408 |
gtgtgagggttcaaacatcttcaagaagataattgatgaagaaacgccaaagggagtgtggcaaagactcaagaaggtgtatggtggcgatgtcaagc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36867654 |
gtgtgagggttcaaacatcttcaagaagataattgatgaagaaacgccaaagggagtgtggcaaagactcaagaaggtgtatggtggcgatgtcaagc |
36867751 |
T |
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