View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5158_high_17 (Length: 323)
Name: NF5158_high_17
Description: NF5158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5158_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 6917637 - 6917927
Alignment:
| Q |
15 |
agatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagc |
114 |
Q |
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| T |
6917637 |
agatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagc |
6917736 |
T |
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| Q |
115 |
tgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaatcct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917737 |
tgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaaatggtctgattctgttgcaggttctcaggttgaaatctaggcaaatcct |
6917836 |
T |
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| Q |
215 |
gcaacatattttaccaacatgcttaaaagacagaatatggcaacttccctaatttatatagataataagatacaagacacacaaatacata |
305 |
Q |
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| T |
6917837 |
gcaacatattttaccaacatgcttaaaagacagaatatggcaacttccctaatttatatagataataagatacaagacacacaaatacata |
6917927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 6960450 - 6960224
Alignment:
| Q |
28 |
atgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagctgggatggagtac |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||| |
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| T |
6960450 |
atgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccaggctagtgcaagctgagatggagtac |
6960351 |
T |
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| Q |
128 |
atcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaatcctgcaacatatttta |
227 |
Q |
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| T |
6960350 |
atcccttctttacagccagttcattaaccttatcaaatatagtctgattctgctgcaggttttcaggttgaaatctaggcaaatgctgcaacata-ttta |
6960252 |
T |
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| Q |
228 |
ccaacatgcttaaaagacagaatatggcaa |
257 |
Q |
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| T |
6960251 |
c--acatgtttaaaagacagaatatggcaa |
6960224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 6920353 - 6920563
Alignment:
| Q |
15 |
agatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagc |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || | ||||||| |
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| T |
6920353 |
agatagagcaccgatgttttgattcaagttctcaattttggtggttccaggtattgggcacacatcatttccttggtgatgaagccaggctagtgcaagc |
6920452 |
T |
|
| Q |
115 |
tgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaatcct |
214 |
Q |
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|| | ||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||||| |||| |||||||| |||||||| || |
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| T |
6920453 |
tgaggtggagtacatcccttctttgtagccaattcattaactttgtcaaatatagtctgattctgctgcaggttttcagtttgaaatcgaggcaaatgct |
6920552 |
T |
|
| Q |
215 |
gcaacatattt |
225 |
Q |
| |
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|||||| |||| |
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| T |
6920553 |
gcaacaaattt |
6920563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 6957859 - 6957649
Alignment:
| Q |
15 |
agatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagc |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || | ||||||| |
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| T |
6957859 |
agatagagcaccgatgttttgattcaagttctcaattttggtggttccaggtattgggcacacatcatttccttggtgatgaagccaggctagtgcaagc |
6957760 |
T |
|
| Q |
115 |
tgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaatcct |
214 |
Q |
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|| | ||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||||| |||| |||||||| |||||||| || |
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| T |
6957759 |
tgaggtggagtacatcccttctttgtagccaattcattaactttgtcaaatatagtctgattctgctgcaggttttcagtttgaaatcgaggcaaatgct |
6957660 |
T |
|
| Q |
215 |
gcaacatattt |
225 |
Q |
| |
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|||||| |||| |
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| T |
6957659 |
gcaacaaattt |
6957649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 6967973 - 6968175
Alignment:
| Q |
15 |
agatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagc |
114 |
Q |
| |
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||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967973 |
agataaagcaccaatgttttgattaaagttctctattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagc |
6968072 |
T |
|
| Q |
115 |
tgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaatcct |
214 |
Q |
| |
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|| |||||||||||||||||||| | |||||||||||||| | ||||| | |||||||| || |||||||| |||||||||||||| |||| || || |
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| T |
6968073 |
tgagatggagtacatcccttcttagcagccagttcattaaccctctcaaatatagtctgattttgctgcaggttttcaggttgaaatctcggcatatact |
6968172 |
T |
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| Q |
215 |
gca |
217 |
Q |
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||| |
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| T |
6968173 |
gca |
6968175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 6917923 - 6917958
Alignment:
| Q |
218 |
acatattttaccaacatgcttaaaagacagaatatg |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6917923 |
acatattttaccaacatgcttaaaagacagaatatg |
6917958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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