View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5158_high_18 (Length: 322)
Name: NF5158_high_18
Description: NF5158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5158_high_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 3 - 322
Target Start/End: Original strand, 1653414 - 1653733
Alignment:
| Q |
3 |
agcagcatcacagaacaagaaggtttgtcagttcaacatattgtttttggcatagctggatcatctcagctttggaaacggaggaaggaatatattagac |
102 |
Q |
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| T |
1653414 |
agcagtatcgcagaacaagaaggtttgtcagttcaacatattgtttttggcatagctggatcatctcagctttggaaacggaggaaggaatatattagac |
1653513 |
T |
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| Q |
103 |
tatggtggcgtcccaatgacatgcgtggccatgtctggttagaggaaaaagtggttgaagaacatggagatgagttattaccccctaccatgatttctgg |
202 |
Q |
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| T |
1653514 |
tatggtggcgtcccaatgacatgcgtggccatgtgtggttagaggaaaaagtggttgaagaacatggagatgagttattaccccctaccatgatttctgg |
1653613 |
T |
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| Q |
203 |
agacatttcgtacttccgttacactaatcccataggtcacccttctggcctccggatttctcgcattatcaaagaaagctttcgccttggtctctcagat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1653614 |
agacatttcgtacttccgttacactaatcccataggtcacccttctggcctccggatttctcgcattatcaaagaaagctttcgccttggtctctcagat |
1653713 |
T |
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| Q |
303 |
gtgcgttggtttgttctatg |
322 |
Q |
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|||||||||||||| ||||| |
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| T |
1653714 |
gtgcgttggtttgtcctatg |
1653733 |
T |
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