View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5158_high_19 (Length: 318)
Name: NF5158_high_19
Description: NF5158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5158_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 140 - 312
Target Start/End: Complemental strand, 1196303 - 1196131
Alignment:
| Q |
140 |
gcttctgtttggtttatttattattcttagaagcttaaagtttttgcccttatttatagtttattcatagtcagtgctttacaagtgctaataaatcaat |
239 |
Q |
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| T |
1196303 |
gcttctgtttggtttatttattattcttagaagcttatagtttttgcccttatttatagtttattcatagtcagtgctttccaagtgctaataaatcaat |
1196204 |
T |
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| Q |
240 |
tagtatctgagattttatttttcttttatttatataaataaaagatagacgaggtagattttatctgtgatgc |
312 |
Q |
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| T |
1196203 |
tagtatctgagattttatttttcttttatttatataaataaaagatagacgaggtagattttatctgtgatgc |
1196131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 12261443 - 12261301
Alignment:
| Q |
1 |
atcatgtgatagattgttgagtttttgagacacgtcaatctcaagtgattccaaaaatgatattttcagggtcaggcttgtacaacctaatttctgttac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
12261443 |
atcatgtgatagattgttgagtttgtgagacacgtcaatctcaagtgattccaaaaatgatattttcagggtcaggtttgtacgacctaatttctgttac |
12261344 |
T |
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| Q |
101 |
agtctaatcactgtggttctgccactgtgacgcagacaggcttct |
145 |
Q |
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| T |
12261343 |
agtctaatcac--tggttctgccactggcatgcagacaggcttct |
12261301 |
T |
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