View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5158_high_5 (Length: 356)
Name: NF5158_high_5
Description: NF5158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5158_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 35 - 356
Target Start/End: Complemental strand, 39142601 - 39142280
Alignment:
| Q |
35 |
tactacataacaaaactttcaaaaacaaattcaaatgataatcaccaagaaaatagatgtttaaccacctaatcactaaaacagaatccatcactgcagt |
134 |
Q |
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| T |
39142601 |
tactacataactaaactttcaaaaacaaattcaaatgataatcaccaagaaaatagatgtttaaccacctaatcactaaaacagaatccatcactgcagt |
39142502 |
T |
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| Q |
135 |
aatatacatatacatttattccaacaaatnnnnnnncatcaccatgatgatttcaaactacaaataaagaacatttattccaacaaatgaaaaaacataa |
234 |
Q |
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| T |
39142501 |
aatatacatatacatttattccaacaaataaaaaaacatcaccatgatgatttcaaactacaaataaagaacatttattccaacaaatgaaaaaacataa |
39142402 |
T |
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| Q |
235 |
aacataaacaccatgacagctgttttcttgacaaaacataaaatgttgctaaggttgtttcatgtttccaaagaaacatttaccattaacaatatatatg |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142401 |
aacataaacaccatgacagctgttttcttgacaaaacataaaatgttgctaaggttgtttcatgtttccaaagaaacatttaccattaacaatatatatg |
39142302 |
T |
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| Q |
335 |
atgaagatgatggtagtggtct |
356 |
Q |
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|||||||||||||||||||||| |
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| T |
39142301 |
atgaagatgatggtagtggtct |
39142280 |
T |
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