View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5158_high_6 (Length: 354)
Name: NF5158_high_6
Description: NF5158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5158_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 50247106 - 50246966
Alignment:
| Q |
1 |
tcaaatgtattggtctttcctaaatttgtttatgagcttaaatgacttccttagtcatcatcatcagtaggattttactatcatgtttatgcctattttg |
100 |
Q |
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| T |
50247106 |
tcaaatgtattggtctttcctaagtttgtttatgagcttaaatgacttccttagtcatcatcatgagtaggattttactatcatgtttatgcctattttg |
50247007 |
T |
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| Q |
101 |
ttaggtaatgtacgtacatgctcttactgtatttggtaaat |
141 |
Q |
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| T |
50247006 |
ttaggtaatgtacgtacatgctcttactgtatttggtaaat |
50246966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 50246634 - 50246552
Alignment:
| Q |
168 |
ttgagaactttatatttgttcttgggatcccaattggagtcaaattcatacttgtcatcaagatgatcctataccatatagaa |
250 |
Q |
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| T |
50246634 |
ttgagaactttatatttgttcttgggatcccaattggagtcaaattcatacttgtcatcaagatgatcctataccatatagaa |
50246552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 50246509 - 50246454
Alignment:
| Q |
293 |
ctcgtggataatgttggtgatatcttataaatttatatttggtttgtctctgctac |
348 |
Q |
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| T |
50246509 |
ctcgtggataatgtcggtgatatcttataaatctatatttggtttgtctgtgctac |
50246454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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