View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5158_high_7 (Length: 353)
Name: NF5158_high_7
Description: NF5158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5158_high_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 49583667 - 49584006
Alignment:
| Q |
14 |
agattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtcct |
113 |
Q |
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| T |
49583667 |
agattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaattgaagaggccggtttagtcct |
49583766 |
T |
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| Q |
114 |
tggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatggaaaatttcgt |
213 |
Q |
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| T |
49583767 |
tggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatggaaaatttcgt |
49583866 |
T |
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| Q |
214 |
aagtcttacaaatatcagagatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattttcactgaatcaaggcaacgtgagc |
313 |
Q |
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| T |
49583867 |
aagtcttacaaatatcagagatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattttcactgaatcaaggcaacgtgagc |
49583966 |
T |
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| Q |
314 |
ttttgtttcgtctgatgccgaatgtaccggaggaagttca |
353 |
Q |
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| T |
49583967 |
ttttgtttcgtctgataccgaatgtaccggaggaagttca |
49584006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 49588989 - 49589153
Alignment:
| Q |
39 |
acataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtccttggtttatatatatttgggaagaac |
138 |
Q |
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| T |
49588989 |
acataaagggaagattcttgttcatggttcttgaactgatacctggactgaaatcgaagaggccaatttagtccttggcttttatacatttgggaagaac |
49589088 |
T |
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| Q |
139 |
ttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatgg |
203 |
Q |
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| T |
49589089 |
ttcgttcaagtgaaaaggtttatacgcaataagaaaatgaaggataaactgtcattctattatgg |
49589153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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