View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5159-Insertion-11 (Length: 89)

Name: NF5159-Insertion-11
Description: NF5159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5159-Insertion-11
NF5159-Insertion-11
[»] chr8 (14 HSPs)
chr8 (8-89)||(25606021-25606102)
chr8 (8-89)||(25454366-25454447)
chr8 (8-89)||(25392676-25392757)
chr8 (8-89)||(25324040-25324121)
chr8 (14-89)||(25652688-25652763)
chr8 (14-89)||(25716583-25716658)
chr8 (14-89)||(25312389-25312464)
chr8 (8-89)||(25696744-25696825)
chr8 (14-89)||(24874059-24874134)
chr8 (8-89)||(23259573-23259654)
chr8 (14-89)||(25342370-25342445)
chr8 (14-82)||(25477051-25477119)
chr8 (14-89)||(25571273-25571348)
chr8 (14-86)||(22899408-22899480)
[»] scaffold0070 (3 HSPs)
scaffold0070 (8-89)||(15639-15720)
scaffold0070 (8-89)||(49161-49242)
scaffold0070 (14-89)||(35679-35754)
[»] scaffold1415 (1 HSPs)
scaffold1415 (8-84)||(420-496)
[»] chr4 (1 HSPs)
chr4 (8-89)||(10325228-10325309)
[»] chr2 (2 HSPs)
chr2 (14-61)||(5118355-5118402)
chr2 (14-61)||(5100796-5100843)
[»] scaffold0830 (1 HSPs)
scaffold0830 (19-81)||(3136-3198)
[»] chr6 (1 HSPs)
chr6 (19-61)||(14413453-14413495)
[»] chr3 (1 HSPs)
chr3 (14-49)||(16885080-16885115)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 6e-37; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 25606021 - 25606102
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25606021 tataatagaactcatatttcccaaacatgttggtaaaactccagagagctttttattgtttagatacaactcacccaaactc 25606102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 25454366 - 25454447
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25454366 tataatagaagtcatatttcccaaacatgttggtaaaactccagagagcttattattgtctagatacaactcacccaaactc 25454447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-32
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 25392676 - 25392757
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25392676 tataagagaaatcatatttcccaaacatgttggtaaaactccagagagcttattattttttagatacaactcacccaaactc 25392757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 9e-30
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 25324040 - 25324121
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  25324040 tataagagaaatcatatttcccaaacatgttggtaaaactccagagagcttattattttgtagatacaactcacccaaactc 25324121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 25652688 - 25652763
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  25652688 agaaatcatatttcccatacatgttggtaaaactccagagagcttattattttgtagatacaactcacccaaactc 25652763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 25716583 - 25716658
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  25716583 agaagtcatatttcccaaacatgttggtaaaactccagagagcttattattttccagatacaactcacccaaactc 25716658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 8e-24
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 25312389 - 25312464
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||    
T  25312389 agaagtcatatttcccaaacatgttggtaaaactccagaaagcttattattttctagatacaattcacccaaactc 25312464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 25696744 - 25696825
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||    
T  25696744 tataagagaaatcatatttcctaaacatgttggtaaaactccagaaagcttattattttcaagatacaactcacccaaactc 25696825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 24874134 - 24874059
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||| ||||||    
T  24874134 agaagtcatatttcccaaacatgttggtaaaacaccagaaagcttattattttctagatacaactcacctaaactc 24874059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 23259573 - 23259654
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    ||||| |||| |||||||||| ||||||||||||||| ||||||| ||||||||| ||| |||| |||||||||||||||||    
T  23259573 tataagagaagtcatatttccgaaacatgttggtaaagctccagaaagcttattactgtctagagacaactcacccaaactc 23259654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 25342370 - 25342445
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||| ||||||||||| |||||||||||||||| ||||| ||||||||||| | ||||||||||||||| ||||||    
T  25342370 agaagtcatatttcccgaacatgttggtaaaacaccagaaagcttattattttctagatacaactcacctaaactc 25342445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 25477051 - 25477119
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacc 82  Q
    |||| |||||||| |||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  25477051 agaagtcatattttccaagcatgttggtaaaacaccagagagcttattattttctagatacaactcacc 25477119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 25571273 - 25571348
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||| ||||||||||| |||||||||||||||| ||||| ||||||||||| | || |||||||||||| ||||||    
T  25571273 agaagtcatatttccctaacatgttggtaaaacaccagaaagcttattattttctatatacaactcacctaaactc 25571348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 22899480 - 22899408
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaa 86  Q
    |||| |||| ||||||||||||||||||||||| ||| | ||||||||| | | || |||||||||| |||||    
T  22899480 agaagtcatgtttcccaaacatgttggtaaaacaccaaaaagcttattactttctaaatacaactcatccaaa 22899408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 74; Significance: 1e-34; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 15720 - 15639
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15720 tataatagaactcatatttcccaaacatgtcggtaaaactcccgagagcttattattgtttagatacaactcacccaaactc 15639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 66; E-Value: 9e-30
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 49242 - 49161
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  49242 tataatagaactcatatttcccaaacatgttggtaaaccaccagagagcttattattttctagatacaactcacccaaactc 49161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 35754 - 35679
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||| | || |||||||||||| ||||||    
T  35754 agaagtcatatttcccaaacatgttggtaaaacaccagaaagcttattattttctatatacaactcacctaaactc 35679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1415 (Bit Score: 69; Significance: 1e-31; HSPs: 1)
Name: scaffold1415
Description:

Target: scaffold1415; HSP #1
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 420 - 496
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcaccca 84  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  420 tataatagaagtcatatttcccaaacatgttggtaaaactccagagagcttattattgtctagatacaactcaccca 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 10325228 - 10325309
Alignment:
Q  8 tataatagaactcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcacccaaactc 89  Q
    ||||| |||| |||||||||||| |||||||||||||||||||||||||||||| || |  |||||||| ||||||||||||    
T  10325228 tataagagaagtcatatttcccatacatgttggtaaaactccagagagcttattcttttcaagatacaagtcacccaaactc 10325309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 5118402 - 5118355
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttatt 61  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  5118402 agaagtcatatttcccaaacatgttggtaacactccagaaagcttatt 5118355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 5100843 - 5100796
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactccagagagcttatt 61  Q
    |||| ||||||||||||||||||||||||| |||||| | ||||||||    
T  5100843 agaagtcatatttcccaaacatgttggtaacactccaaaaagcttatt 5100796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 3198 - 3136
Alignment:
Q  19 tcatatttcccaaacatgttggtaaaactccagagagcttattattgtttagatacaactcac 81  Q
    |||||||||||||||||| ||  ||||| ||||| ||||||||||| | |||||| |||||||    
T  3198 tcatatttcccaaacatggtgacaaaacaccagatagcttattattttgtagatataactcac 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 14413453 - 14413495
Alignment:
Q  19 tcatatttcccaaacatgttggtaaaactccagagagcttatt 61  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  14413453 tcatatttcccaaacatgttggtaacactccaaaaagcttatt 14413495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 16885115 - 16885080
Alignment:
Q  14 agaactcatatttcccaaacatgttggtaaaactcc 49  Q
    |||||||||||||||||| ||||||||||| |||||    
T  16885115 agaactcatatttcccaagcatgttggtaacactcc 16885080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University