View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5159-Insertion-4 (Length: 794)
Name: NF5159-Insertion-4
Description: NF5159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5159-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Complemental strand, 31694111 - 31693485
Alignment:
| Q |
19 |
ctttaaagtgatgcagtcagtttagatgagtcaagttcattatattgtatagttgaaacatgaaaaagagaggaatcaaatttggggtttatgaacatgc |
118 |
Q |
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| T |
31694111 |
ctttaaagtgatgcagtcagtttagatgagtcaagttcattatattgtatagttgaaacatgaaaaagagaggaatcaaatttggggtttatgaacatgc |
31694012 |
T |
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| Q |
119 |
atatctcatgagacatgattgattacaattatgcatagagggaaaattttctacaatctatataaattaatcagcactacattccaactaatcataaaaa |
218 |
Q |
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| T |
31694011 |
atatctcatgagacatgattgattacaattatgcatagagggaaaattttctacaatctatataaattaattaacattacattccaactaatcacaaaaa |
31693912 |
T |
|
| Q |
219 |
ttgattatgatttatacttctgtgcagagtagcctgatgtacaaccttatcgaaagataccccagtagggataaatttcgcctgacaatctttcctggga |
318 |
Q |
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| T |
31693911 |
ttgattctgatttatacttctgtgcagagtagtctgatgtacaaccttatcgaaagataccccagtagggataaatttcgcctgacaatctttcctggga |
31693812 |
T |
|
| Q |
319 |
tcatagatcatagtcttattgtggctttgtttgtaatatttttgaaaggaagaaaataatatcattgacaacgacattcaattgcaatttatttaaaccg |
418 |
Q |
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| T |
31693811 |
tcatagatcatagtcttattgtggctttgtttgtaatatttttgaaaggaagaaaataatatcattgacaacgacattcaattgcaatttatttaaaccg |
31693712 |
T |
|
| Q |
419 |
attatatgtatttgtcacttacagttgcaatgcaagaaaaggttttgatttctgatatttgtactcacaaccacagatttatggttctaagttctaacac |
518 |
Q |
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| T |
31693711 |
attatatgtatttgtcacttacagttgcaatgcaagaaaaggttttgatttgtgatatttgtactcacaaccacagatttatggttctaagttctaacac |
31693612 |
T |
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| Q |
519 |
tggatcatagttcctcttagattattataagaaagatggagagaatgcggtgaagaaggaacaggggggctatttcagtctcctattatagacgtttgcg |
618 |
Q |
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| T |
31693611 |
tggatcatagttcctcttatattattatcagaaagatagagagaatgcggtgaagaaggaacagggggg---tttcagtctcctattatagacgtttgcg |
31693515 |
T |
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| Q |
619 |
atggcctcctgcattagtaatcaaaatttt |
648 |
Q |
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| T |
31693514 |
acggcctcctgcattagtaatcaaaatttt |
31693485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 27 - 478
Target Start/End: Complemental strand, 31687800 - 31687350
Alignment:
| Q |
27 |
tgatgcagtcagtttagatgagtcaagttcattatattgtatagttgaaacatgaaaaagagaggaatcaaatttggggtttatgaacatgcatatctca |
126 |
Q |
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| T |
31687800 |
tgatgctgtcagtttagatgagttgagttcatt-tatagtatagttagaacatgaagaagagaggaatcaaatttggagtttataaacatgcgtatctca |
31687702 |
T |
|
| Q |
127 |
tgagacatgattgattacaattatgcatagagggaaaattttctacaatctatataaattaatcagcactacattccaactaatcataaaaattgattat |
226 |
Q |
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| T |
31687701 |
tgagacatgatggactacaattatgtatagatggaaaattttctacagtctatgtaaaataattagtattacgttccagctgatcacaaaaattgattat |
31687602 |
T |
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| Q |
227 |
gatttatacttctgtgcagagtagcctgatgtacaaccttatcgaaagataccccagtagggataaatttcgcctgacaatctttcctgggatcatagat |
326 |
Q |
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| T |
31687601 |
attttatacttctgtgcagagtagcctgatgtacaagcttaaccaaatatacgtcagtcggggtaaatttcgcctgacaatctttcctgggatcatagat |
31687502 |
T |
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| Q |
327 |
catagtcttattgtggctttgtttgtaatatttttgaaaggaagaaaataatatcattgacaacgacattcaattgcaatttatttaaaccgattatatg |
426 |
Q |
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| T |
31687501 |
cgtggtcttattgtggcattgtttgtaatatttttgaatggaagaaaatagtatcattgacgacaacattcaattgcaatttatttaaaccgattgtgtg |
31687402 |
T |
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| Q |
427 |
tatttgtcacttacagttgcaatgcaagaaaaggttttgatttctgatattt |
478 |
Q |
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| T |
31687401 |
tatttgtcacttatagctgcaatgcaaggaaaggttttgatttgtgatattt |
31687350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 684 - 752
Target Start/End: Complemental strand, 31693468 - 31693401
Alignment:
| Q |
684 |
tatcagtaacaaagctgtgattttccgatgggcannnnnnnagggcttcgactgtcggcatctgaattt |
752 |
Q |
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| T |
31693468 |
tatcagtaacaaagctgtgattttccgat-ggcatttttttagggcttcgactgtcggtatctgaattt |
31693401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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