View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5159-Insertion-5 (Length: 653)
Name: NF5159-Insertion-5
Description: NF5159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5159-Insertion-5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 425 - 653
Target Start/End: Complemental strand, 51169487 - 51169256
Alignment:
| Q |
425 |
ggttaatctaccttatgagcaccaaataattccccatctttaaaaacctt---ctttcaaatttacgtgaaagaaatgttatgctttattattttccaga |
521 |
Q |
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| T |
51169487 |
ggttaatctaccttatgagcaccaaataattccccatctttaaaaaccttattctttcaaatttacgtgaaagaaatgttatgctttattattttccaga |
51169388 |
T |
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| Q |
522 |
caaccaaaccaagaacaaagttgttgtttacatgtgcatgtcattgaactaattacggattattaaaaacatcaccaaatggatcactacttggtgtggt |
621 |
Q |
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| T |
51169387 |
caaccaaaccaagaacaaagttgttgtttacatgtgcatgccattgaactaattacggattattaaaaacatcacaaaatggatcactacttggtgtggt |
51169288 |
T |
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| Q |
622 |
ttgacaagagcttcacaaactcaatgaccaca |
653 |
Q |
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| T |
51169287 |
ttgacaagagcttcacaaactcaatgaccaca |
51169256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 51169899 - 51169706
Alignment:
| Q |
8 |
cgttaactgtgtgattaacattgtttggcagctaatgaggcatgtgagagacttgcgggtattggattgttaaaagttgcataccatgcatgcatgtcag |
107 |
Q |
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| T |
51169899 |
cgttaactgtgtgattaagattgtttggcagctaatgaggcatgtgagagacttgcgggtattggattgttaaaagttgcataccatgcatgcatgtcag |
51169800 |
T |
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| Q |
108 |
cactacctggtgtttgttaaaagataacgacttccatatctataaagttttaggaaaatgttatgtacatcccttttaggtgtatacattatgag |
202 |
Q |
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| T |
51169799 |
cactacctggtgtttgttaaaagataacgacttccatatctataaagttttaggaaaatgttatgtacat-ccttttaggtgtatacattatgag |
51169706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 51169615 - 51169538
Alignment:
| Q |
277 |
atagatgtgaaaaattaattcatatagttgaaaattttattaggcataataccaaatacctaattatttaaggttgtc |
354 |
Q |
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| T |
51169615 |
atagatgtgaaaaattaattcatatagttgaaaattttatcaggcataataccaaatacctaattatttaaggttgtc |
51169538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 503 - 595
Target Start/End: Complemental strand, 51153455 - 51153365
Alignment:
| Q |
503 |
tgctttattattttccagacaaccaaaccaagaacaaagttgttgtttacatgtgcatgtcattgaactaattacggattattaaaaacatca |
595 |
Q |
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| T |
51153455 |
tgctttattatattccggacaaacaacc--agaacaaagttgttgtctacatgtgcatataattgcactaattacggattattgaaaacatca |
51153365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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