View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5159-Insertion-6 (Length: 534)
Name: NF5159-Insertion-6
Description: NF5159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5159-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 93 - 534
Target Start/End: Complemental strand, 9418398 - 9417951
Alignment:
| Q |
93 |
ctttctttcatattagttgcttatattttacattcaaattttatgcaatata-atagtagatgtagatcaattttgatttcaaatgttgatcacttactc |
191 |
Q |
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| T |
9418398 |
ctttctttcatattagttgtttttattttacattcaaatcttatgcaatatagatagtagatgtagatcaattttgatttcaaatgttgatcacttactc |
9418299 |
T |
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| Q |
192 |
aaatcaaatttggtccaaatataatgttgtaaaagaaatattttgactaaccnnnnnnnnnnnn-----ttgcgacatgaaatcaatatgttggtatcgt |
286 |
Q |
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| T |
9418298 |
aaatcaaatttggtccaaatataatgttgtaaaagaaatattttgactaaccaagaaaaaaaaaaaacattgtgacatgaaatcaatatgttggtatcgt |
9418199 |
T |
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| Q |
287 |
tcgatcaagatcaaataatttatatttgagtttgtttttaagtttctttaaatttattttaccaaacctaattaaaatatggacaattgtgtgtttgcat |
386 |
Q |
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| T |
9418198 |
tcgatcaagatcaaataatttatatttgagtttgtttttaagtttctttaaatttattttaccaaacctaattaaaatatggacaattgtgtgtttgcat |
9418099 |
T |
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| Q |
387 |
gaattttctgagctattgaaaggaagttcaatcaaaattaaatttagtatgcaatatatacaaaggaatgaaaattgctcacacattttatactttttga |
486 |
Q |
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| T |
9418098 |
gaattttctgagctattgaaaggaagttcaatcaaaattaaatttagtatgcaatatatacaatggaattaaaattgctcacacattttatactttttta |
9417999 |
T |
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| Q |
487 |
ttttagggttgtgatgcttcgatactaatcgattcaagagtaaacagg |
534 |
Q |
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| T |
9417998 |
ttttagggttgtgatgcttcgatactaatcgattcaagagtaaacagg |
9417951 |
T |
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