View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5159-Insertion-7 (Length: 307)

Name: NF5159-Insertion-7
Description: NF5159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5159-Insertion-7
NF5159-Insertion-7
[»] chr2 (2 HSPs)
chr2 (8-307)||(5779001-5779303)
chr2 (8-277)||(5817276-5817548)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 5779001 - 5779303
Alignment:
Q  8 gataacaagtatttcgttctcaaatgtcatatgttgaaagaatatttgcctcctgctgtccttcgcaaaattgccaatgatacgcatttgcaagatacgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5779001 gataacaagtatttcgttctcaaatgtcatatgttgaaagaatatttgcctcctgctgtccttcgcaaaattgccaatgatatgcatttgcaagatacgg 5779100  T
Q  108 tggcaaccgaaatcatgggccaggctacatataggataaacatcact---atgcttaacggctctgtggccgtcagcaacaacattgtccgagctctcgt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  5779101 tggcaaccgaaatcatgggccaggctacatataggataaacatcactgtgatggttaacggctctgtggccgtcagcaacaacattgtccgagctcttgt 5779200  T
Q  205 tactcggactttgtatgatcgctctccagttgctgtctacgctgtctccaaggtgttgatgccgaaagagcttcccgtgcccatcacctccgatgtcacc 304  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  5779201 tactcggactttgtatgatcgctctccaatcgctgtctacgctgtctccaaggtgttgatgccgaaagagcttcccgcgctcatcacctctgatgtcacc 5779300  T
Q  305 gcc 307  Q
    |||    
T  5779301 gcc 5779303  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 5817276 - 5817548
Alignment:
Q  8 gataacaagtatttcgttctcaaatgtcatatgttgaaagaatatttgcctcctgctgtccttcgcaaaattgccaatgatacgcatttgcaagatacgg 107  Q
    |||||||||||||| |||||| | |||||||| |||| |||||||||  |||| || ||| ||| | |||||| ||||| |  |||||||||||  | ||    
T  5817276 gataacaagtattttgttctcgagtgtcatatattgagagaatatttttctcccgccgtctttccccaaattgtcaatgtttggcatttgcaagtcatgg 5817375  T
Q  108 tggcaaccgaaatcatgggccaggctacatataggataaacatcact---atgcttaacggctctgtggccgtcagcaacaacattgtccgagctctcgt 204  Q
    |||||  | |||||||||| |||| || ||||| |||||||||||||   ||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  5817376 tggcagtcaaaatcatggggcaggataaatatatgataaacatcactgcaatggttaacggctctgtggccatcagcaacaacattgttcgagctctcgt 5817475  T
Q  205 tactcggactttgtatgatcgctctccagttgctgtctacgctgtctccaaggtgttgatgccgaaagagctt 277  Q
    |||| |||| ||||||||||||||||  |||| ||| |||||  ||||||||||||||||||| |||||||||    
T  5817476 tacttggacattgtatgatcgctctctggttgttgtttacgccttctccaaggtgttgatgcccaaagagctt 5817548  T

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