View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5159_low_1 (Length: 581)
Name: NF5159_low_1
Description: NF5159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5159_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 554; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 17108860 - 17109421
Alignment:
| Q |
1 |
gctctctgggatagtggagattaggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17108860 |
gctctctgggatagtggagattaggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaag |
17108959 |
T |
|
| Q |
101 |
gatatggatggatggaaagattgggaatctgaagctgttgaggttgagggtgtatttccacgcctacgaaagctttatatagtgcgatgtccaagtctga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17108960 |
gatatggatggatggaaagattgggaatctgaagctgttgaggttgagggtgtatttccacgcctacgaaagctttatatagtgcgatgtccaagtctga |
17109059 |
T |
|
| Q |
201 |
aaggcaaaatgccaaagtcacttgaatgtttagtgaatttgaaaatctgtgactgtaaacaacttgttgattctgttccatcttctccgaaaatcagtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109060 |
aaggcaaaatgccaaagtcacttgaatgtttagtgaatttgaaaatctgtgactgtaaacaacttgttgattctgttccatcttctccgaaaatcagtga |
17109159 |
T |
|
| Q |
301 |
attacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcgtgggaggatcctccgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17109160 |
attacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcttgggaggatcctccgtg |
17109259 |
T |
|
| Q |
401 |
catttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactaca |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109260 |
catttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactaca |
17109359 |
T |
|
| Q |
501 |
atttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaa |
562 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17109360 |
atttccttgtaaaattggtcatcagtggtggctgtgactctctaacgaccttccctctcaaa |
17109421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 2 - 555
Target Start/End: Original strand, 16977532 - 16978082
Alignment:
| Q |
2 |
ctctctgggatagtggagattaggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaagg |
101 |
Q |
| |
|
|||||||| ||||||| |||| | | ||||||||||||||||| ||| ||||| || |||| |||||||||||||||||||||| |||| |||||||| |
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| T |
16977532 |
ctctctggaatagtggtgattggtatggagttttatagggatgggagaagctctactgtatctattccatttccatccttggaaaccttaacttttaagg |
16977631 |
T |
|
| Q |
102 |
atatggatggatggaaagattgggaatctgaagctgttgaggttgagggtgtatttccacgcctacgaaagctttatatagtgcgatgtccaagtctgaa |
201 |
Q |
| |
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||||| |||||||| || | ||||||| ||||| ||||| || || ||| |||||||| ||| |||||||| |||| |||||||||||| |||||| |
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| T |
16977632 |
atatgaatggatgggaaaaatgggaatttgaagttgttggggg---ggttgtttttccacgtctaaaaaagctttctataatgcgatgtccaaatctgaa |
16977728 |
T |
|
| Q |
202 |
aggcaaaatgccaaagtcacttgaatgtttagtgaatttgaaaatctgtgactgtaaacaacttgttgattctgttccatcttctccgaaaatcagtgaa |
301 |
Q |
| |
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|| |||| | ||| || |||||||||||||||||| | ||||||| ||||| || ||||| || || ||||||||||| ||||| |||||||||| |
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| T |
16977729 |
agacaaattaccagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaa |
16977828 |
T |
|
| Q |
302 |
ttacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcgtgggaggatcctccgtgc |
401 |
Q |
| |
|
||||||| | |||||| ||| ||||| ||||||||||| || | || ||||||| |||||| | || ||| ||||| | | | ||||||||||||| |
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|
| T |
16977829 |
ctacgtctcaccaattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgttacatcgaaggatcctccgtgg |
16977928 |
T |
|
| Q |
402 |
atttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaa |
501 |
Q |
| |
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||| || |||| | | ||||||||||||||||||||||||||| ||||||||||||||| || |||||| |||| ||||| ||| || ||||| |
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| T |
16977929 |
attggaccgggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcccaactatgcatattcccctatgcggatgctacag |
16978028 |
T |
|
| Q |
502 |
tttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccc |
555 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||| || ||||| |
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| T |
16978029 |
tttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattccc |
16978082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 2 - 555
Target Start/End: Original strand, 17029404 - 17029954
Alignment:
| Q |
2 |
ctctctgggatagtggagattaggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaagg |
101 |
Q |
| |
|
|||||||| ||||||| |||| | | ||||||||||||||||| ||| ||||| || |||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
17029404 |
ctctctggaatagtggtgattggtatggagttttatagggatgggagaagctctactgtatctattccatttccatccttggaaaccttaacttttaagg |
17029503 |
T |
|
| Q |
102 |
atatggatggatggaaagattgggaatctgaagctgttgaggttgagggtgtatttccacgcctacgaaagctttatatagtgcgatgtccaagtctgaa |
201 |
Q |
| |
|
||||| |||||||| || | ||||||| ||||| |||| | | || ||| |||||||| ||| |||||||| |||| |||||||||||| |||||| |
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| T |
17029504 |
atatgaatggatgggaaaaatgggaatttgaagttgttngg---ggggttgtttttccacgtctaaaaaagctttctataatgcgatgtccaaatctgaa |
17029600 |
T |
|
| Q |
202 |
aggcaaaatgccaaagtcacttgaatgtttagtgaatttgaaaatctgtgactgtaaacaacttgttgattctgttccatcttctccgaaaatcagtgaa |
301 |
Q |
| |
|
|| |||| | ||| || |||||||||||||||||| | ||||||| ||||| || ||||| || || ||||||||||| ||||| |||||||||| |
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|
| T |
17029601 |
agacaaattaccagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaa |
17029700 |
T |
|
| Q |
302 |
ttacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcgtgggaggatcctccgtgc |
401 |
Q |
| |
|
||||||| | |||||| ||| ||||| ||||||||||| || | || ||||||| |||||| | || ||| ||| | | | | ||||||||||||| |
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|
| T |
17029701 |
ctacgtctcaccaattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgctacatcgaaggatcctccgtgg |
17029800 |
T |
|
| Q |
402 |
atttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaa |
501 |
Q |
| |
|
||| |||| || | | ||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||| ||||| ||| || |||||| |
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|
| T |
17029801 |
attggatcaggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcgcaactatgcatattcccctatgcggatgctacaa |
17029900 |
T |
|
| Q |
502 |
tttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccc |
555 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||| || ||||| |
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|
| T |
17029901 |
tttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattccc |
17029954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 2 - 555
Target Start/End: Original strand, 17047742 - 17048292
Alignment:
| Q |
2 |
ctctctgggatagtggagattaggacggagttttatagggatgtgagctgctcttctccatctgttccatttccatccttggaaactttaatttttaagg |
101 |
Q |
| |
|
|||||||| ||||||| |||| | | ||||||||| ||||||| ||| ||||| || |||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
17047742 |
ctctctggaatagtggtgattggtatggagttttacagggatgggagaagctctactgtatctattccatttccatccttggaaaccttaacttttaagg |
17047841 |
T |
|
| Q |
102 |
atatggatggatggaaagattgggaatctgaagctgttgaggttgagggtgtatttccacgcctacgaaagctttatatagtgcgatgtccaagtctgaa |
201 |
Q |
| |
|
||||| |||||||| || | ||||||| ||||| |||| ||| || ||| |||||||| ||| |||||||| |||| |||||||||||| |||||| |
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|
| T |
17047842 |
atatgaatggatgggaaaaatgggaatttgaagttgttaaggg---ggttgtttttccacgtctaaaaaagctttctataatgcgatgtccaaatctgaa |
17047938 |
T |
|
| Q |
202 |
aggcaaaatgccaaagtcacttgaatgtttagtgaatttgaaaatctgtgactgtaaacaacttgttgattctgttccatcttctccgaaaatcagtgaa |
301 |
Q |
| |
|
|| |||| | ||| || |||||||||||||||||| | ||||||| ||||| || ||||| || || ||||||||||| ||||| |||||||||| |
|
|
| T |
17047939 |
agacaaattaccagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaa |
17048038 |
T |
|
| Q |
302 |
ttacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcgtgggaggatcctccgtgc |
401 |
Q |
| |
|
||||||| | |||||| ||| ||||| ||||||||||| || | || ||||||| |||||| | || ||| ||| | | | | ||||||||||||| |
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|
| T |
17048039 |
ctacgtctcaccaattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgctacatcgaaggatcctccgtgg |
17048138 |
T |
|
| Q |
402 |
atttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaa |
501 |
Q |
| |
|
||| |||| || | | ||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||| ||||| ||| || |||||| |
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| T |
17048139 |
attggatcaggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcgcaactatgcatattcccctatgcggatgctacaa |
17048238 |
T |
|
| Q |
502 |
tttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccc |
555 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||| || ||||| |
|
|
| T |
17048239 |
tttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattccc |
17048292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 14297979 - 14298044
Alignment:
| Q |
63 |
ctgttccatttccatccttggaaactttaatttttaaggatatggatggatggaaagattgggaat |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| ||| |||| |||| ||||||| |
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| T |
14297979 |
ctgttccatttccatccttggaaactttacaatttgaggatatgtatgaatgggaagaatgggaat |
14298044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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