View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5159_low_2 (Length: 306)

Name: NF5159_low_2
Description: NF5159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5159_low_2
NF5159_low_2
[»] chr5 (15 HSPs)
chr5 (21-296)||(31694120-31694392)
chr5 (23-170)||(27328729-27328875)
chr5 (19-170)||(38879558-38879708)
chr5 (19-170)||(24448867-24449015)
chr5 (20-110)||(12006339-12006428)
chr5 (19-170)||(4619114-4619264)
chr5 (99-186)||(18426000-18426087)
chr5 (119-181)||(39079873-39079935)
chr5 (128-181)||(3771307-3771360)
chr5 (128-181)||(10634262-10634315)
chr5 (19-59)||(16957399-16957439)
chr5 (19-59)||(25622545-25622585)
chr5 (78-170)||(28516500-28516592)
chr5 (125-181)||(39301089-39301145)
chr5 (19-59)||(39801601-39801641)
[»] chr3 (23 HSPs)
chr3 (20-170)||(6411833-6411979)
chr3 (22-181)||(34420656-34420813)
chr3 (21-191)||(25944447-25944615)
chr3 (21-181)||(26573115-26573272)
chr3 (19-168)||(13628800-13628948)
chr3 (19-170)||(40272822-40272970)
chr3 (28-170)||(8247706-8247847)
chr3 (18-170)||(46421043-46421195)
chr3 (18-111)||(45948847-45948937)
chr3 (26-170)||(9607202-9607345)
chr3 (19-181)||(22609754-22609912)
chr3 (22-170)||(29366733-29366880)
chr3 (19-170)||(13730612-13730762)
chr3 (71-181)||(45620887-45620998)
chr3 (151-189)||(829581-829619)
chr3 (19-170)||(26869706-26869853)
chr3 (19-111)||(49013483-49013574)
chr3 (21-156)||(54374357-54374490)
chr3 (19-161)||(516417-516559)
chr3 (76-170)||(4495728-4495822)
chr3 (19-112)||(353359-353451)
chr3 (19-190)||(53996575-53996744)
chr3 (19-59)||(54484798-54484838)
[»] chr4 (26 HSPs)
chr4 (76-181)||(25343153-25343258)
chr4 (19-170)||(21646941-21647091)
chr4 (19-176)||(35567141-35567295)
chr4 (128-187)||(47441646-47441705)
chr4 (21-169)||(30690188-30690340)
chr4 (44-167)||(17043429-17043549)
chr4 (19-111)||(20639668-20639758)
chr4 (77-181)||(487200-487304)
chr4 (26-170)||(16911539-16911682)
chr4 (20-182)||(54730213-54730376)
chr4 (104-182)||(11054238-11054317)
chr4 (19-170)||(44363140-44363290)
chr4 (102-181)||(54640429-54640508)
chr4 (22-170)||(5648236-5648380)
chr4 (103-180)||(49938681-49938759)
chr4 (77-170)||(39029126-39029219)
chr4 (19-170)||(40915806-40915953)
chr4 (125-181)||(49938551-49938608)
chr4 (125-169)||(6966070-6966114)
chr4 (19-111)||(23501823-23501914)
chr4 (19-59)||(35532077-35532117)
chr4 (19-59)||(38755918-38755958)
chr4 (19-59)||(40553947-40553987)
chr4 (125-181)||(42164261-42164317)
chr4 (27-75)||(44718636-44718684)
chr4 (129-181)||(54966987-54967039)
[»] chr1 (31 HSPs)
chr1 (23-170)||(23768334-23768478)
chr1 (19-170)||(27474281-27474428)
chr1 (19-181)||(45812547-45812705)
chr1 (19-156)||(35005137-35005273)
chr1 (19-170)||(20004100-20004250)
chr1 (19-170)||(46247963-46248111)
chr1 (20-170)||(6925100-6925247)
chr1 (19-170)||(18944643-18944794)
chr1 (76-170)||(41319870-41319964)
chr1 (76-181)||(2435851-2435956)
chr1 (76-181)||(17470410-17470515)
chr1 (76-181)||(18724609-18724714)
chr1 (19-181)||(35019219-35019377)
chr1 (19-170)||(35117775-35117926)
chr1 (23-170)||(27201647-27201793)
chr1 (20-170)||(30395737-30395886)
chr1 (128-181)||(6983925-6983978)
chr1 (19-170)||(46991804-46991952)
chr1 (19-109)||(4349699-4349786)
chr1 (19-59)||(45402204-45402244)
chr1 (147-194)||(43207465-43207512)
chr1 (147-190)||(50811919-50811962)
chr1 (76-170)||(4430090-4430184)
chr1 (147-181)||(28894666-28894700)
chr1 (147-181)||(46859060-46859094)
chr1 (129-187)||(49546024-49546082)
chr1 (128-181)||(2436009-2436062)
chr1 (19-170)||(14617038-14617186)
chr1 (19-170)||(18741967-18742119)
chr1 (22-59)||(33594144-33594181)
chr1 (125-181)||(52910206-52910262)
[»] chr6 (8 HSPs)
chr6 (19-170)||(12221924-12222075)
chr6 (74-181)||(12889392-12889499)
chr6 (19-164)||(29355865-29356009)
chr6 (18-170)||(2755429-2755582)
chr6 (19-170)||(1346941-1347087)
chr6 (76-181)||(13905043-13905148)
chr6 (19-170)||(1354767-1354913)
chr6 (19-59)||(12885998-12886038)
[»] chr8 (18 HSPs)
chr8 (22-181)||(44781517-44781675)
chr8 (23-170)||(28817640-28817784)
chr8 (19-181)||(29521695-29521855)
chr8 (77-181)||(14018034-14018138)
chr8 (21-170)||(36720773-36720919)
chr8 (19-170)||(39461004-39461154)
chr8 (19-170)||(20284079-20284231)
chr8 (19-170)||(35261656-35261804)
chr8 (19-170)||(21070707-21070860)
chr8 (19-170)||(7136537-7136687)
chr8 (19-170)||(25250499-25250649)
chr8 (19-170)||(44530126-44530274)
chr8 (19-181)||(8483948-8484107)
chr8 (102-181)||(26457681-26457760)
chr8 (19-170)||(12670260-12670406)
chr8 (128-181)||(42083815-42083868)
chr8 (19-59)||(16013541-16013581)
chr8 (21-111)||(29877130-29877217)
[»] scaffold1176 (1 HSPs)
scaffold1176 (21-170)||(1599-1743)
[»] chr2 (15 HSPs)
chr2 (19-181)||(10543663-10543825)
chr2 (19-170)||(14530295-14530445)
chr2 (77-170)||(7214511-7214604)
chr2 (128-192)||(99379-99443)
chr2 (19-170)||(8455326-8455474)
chr2 (71-170)||(23145757-23145856)
chr2 (71-170)||(23557547-23557646)
chr2 (19-170)||(24200633-24200783)
chr2 (19-170)||(11514413-11514560)
chr2 (19-181)||(4516361-4516520)
chr2 (19-107)||(10546203-10546288)
chr2 (19-170)||(25249748-25249895)
chr2 (76-181)||(44521437-44521542)
chr2 (19-59)||(9671264-9671304)
chr2 (19-59)||(44643608-44643648)
[»] chr7 (21 HSPs)
chr7 (33-181)||(19266416-19266561)
chr7 (76-181)||(19265781-19265885)
chr7 (76-181)||(48123548-48123653)
chr7 (19-137)||(38262206-38262321)
chr7 (19-170)||(43557449-43557600)
chr7 (19-170)||(42805501-42805651)
chr7 (19-170)||(2541029-2541178)
chr7 (76-170)||(22699034-22699128)
chr7 (76-170)||(42798646-42798740)
chr7 (19-170)||(11617598-11617746)
chr7 (22-181)||(10693086-10693241)
chr7 (76-170)||(19426953-19427047)
chr7 (19-170)||(35334826-35334972)
chr7 (76-168)||(11741774-11741864)
chr7 (76-181)||(23419738-23419843)
chr7 (128-181)||(28362261-28362314)
chr7 (128-181)||(32233250-32233303)
chr7 (19-56)||(36602535-36602572)
chr7 (19-168)||(47716438-47716586)
chr7 (19-137)||(7879648-7879763)
chr7 (155-191)||(20473734-20473770)
[»] scaffold0258 (1 HSPs)
scaffold0258 (19-170)||(13034-13181)
[»] scaffold0057 (1 HSPs)
scaffold0057 (19-111)||(46867-46956)
[»] scaffold0024 (1 HSPs)
scaffold0024 (125-181)||(83840-83897)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 31694120 - 31694392
Alignment:
Q  21 ggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactt 120  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31694120 ggtgcactaaatctcccgcatacgcaaggtctgggaaggagtcccatc---aataggtgtattgtatgcagctttagcctattttttacacgagtgactt 31694216  T
Q  121 ttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaaaactcccctttgacagcatcagtttatgtggaaaaaata 220  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31694217 ttttcaagacttgaacctatgacctatcagtcacgtgacaacaactttactgttgcgccaaaactcccctttgacagcatcagtttatgtggaaaaaata 31694316  T
Q  221 tgatgttctaaatattaactnnnnnnncatcaactgaaatttatacattgaatttattggcttatttatttcctct 296  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31694317 tgatgttctaaatattaactaaaaaaacatcaactgaaatttatacattgaatttattggcttatttatttcctct 31694392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 27328875 - 27328729
Alignment:
Q  23 tgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactttt 122  Q
    |||| |||| ||||||| ||||||||||  |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| |||||||||| || |||| ||    
T  27328875 tgcattaaagctcccgcatacgcagggttcgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctgttttttacacaagagactgtt 27328777  T
Q  123 ttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | || ||||||||||| ||| || |||||||| |||||||||||||||    
T  27328776 tccaggacttgaacctgtgacctttcagtcacatgacaacaactttac 27328729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 38879708 - 38879558
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| ||||||| || || | |    
T  38879708 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctgttttttatacaagaggc 38879610  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| || |||||||| |||||||||||||||    
T  38879609 tgtttccaggacttgaacccgtgacctttcagtcacatgacaacaactttac 38879558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 24449015 - 24448867
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| |||| || ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| |||||||||||||| |  | |    
T  24449015 ccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctattttttacacaaaaggc 24448919  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  24448918 tgtttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 24448867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 12006339 - 12006428
Alignment:
Q  20 cggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttaca 110  Q
    |||||||||||| ||||||| || ||||||||||||||||  ||||| |||  || ||||||||||||| ||| ||| |||||||||||||    
T  12006339 cggtgcactaaagctcccgcataggcagggtctgggaaggggtcccaccat-tattggtgtattgtatggagccttaccctattttttaca 12006428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 4619114 - 4619264
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||| ||| || || ||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| |||||||||| || | |    
T  4619114 ccggtgcactaaagctctcgcatatgcggggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctgttttttacacaagaggc 4619212  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  4619213 tatttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 4619264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 18426087 - 18426000
Alignment:
Q  99 ctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaaaactc 186  Q
    ||||||||||||| || || | |||||||||||| ||||| |||  | |||||||||| | |||||||||| ||||| ||||| ||||    
T  18426087 ctattttttacacaagagattgttttcaagacttaaacctgtgacatttcagtcacgtaataacaactttattgttgtgccaagactc 18426000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 39079873 - 39079935
Alignment:
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||| |||||||||||||  ||| || || ||||| ||||||||||||||| ||||||||||    
T  39079873 tttttccaagacttgaacccgtgacctttctgtcacatgacaacaactttaccgttgcgccaa 39079935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 3771360 - 3771307
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||| ||||| ||| || |||||||||||| |||||| |||||||||||||||    
T  3771360 gacttaaacctgtgacctttcagtcacgtgagaacaacattactgttgcgccaa 3771307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 10634262 - 10634315
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    |||||||||| |||| || |||||||| |||||||||||| || ||||||||||    
T  10634262 gacttgaacccatgacctttcagtcacttgacaacaacttcaccgttgcgccaa 10634315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16957439 - 16957399
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  16957439 ccggtgcactaaagctcccgcatacgcagggtccgggaagg 16957399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 25622585 - 25622545
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  25622585 ccggtgcactaaagctcccgcatacgcagggtccgggaagg 25622545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 28516500 - 28516592
Alignment:
Q  78 tgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||| |||||  |||||| |||||||||| || |  | ||| |||||||||||||  ||| || |||| ||| |||||||||||||||    
T  28516500 tgtattgtacgcagccctagcctgttttttacacaagaggatgtttccaagacttgaacccgtgacctttcagccacctgacaacaactttac 28516592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 39301145 - 39301089
Alignment:
Q  125 caagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    |||||||||||||  ||| || ||||| || ||||||||||||||| ||||||||||    
T  39301145 caagacttgaacccgtgacctttcagtaacatgacaacaactttaccgttgcgccaa 39301089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 39801641 - 39801601
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| |||| ||||||||||||||    
T  39801641 ccggtgcactaaagctcccgcatacgtagggtctgggaagg 39801601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 6411833 - 6411979
Alignment:
Q  20 cggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgact 119  Q
    |||||||||||| ||||||| |||||| ||||||||||||  |||||||||   | ||||||||||| ||||| ||| ||| ||||| |||| || | ||    
T  6411833 cggtgcactaaagctcccgcatacgcaaggtctgggaaggggtcccatcat---ttggtgtattgtacgcagccttaccctgttttt-acacaagaggct 6411928  T
Q  120 tttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
     ||| ||||||||||||| |||| |||||||| || |||||||||||||||    
T  6411929 gtttacaagacttgaacccatgacctatcagttacatgacaacaactttac 6411979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 34420656 - 34420813
Alignment:
Q  22 gtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttt 121  Q
    |||||||||| ||||| | |||||| |||| |||||||  ||||| |||   | ||||||| ||| ||||| ||| ||| |||||||||| || | || |    
T  34420656 gtgcactaaagctcccacatacgcaaggtccgggaaggggtcccaccatt--ttggtgtatggtacgcagccttaccctgttttttacacaagaggctgt 34420753  T
Q  122 tttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    || || ||||||||||  ||| || |||||||||||||||||||||||||||||||||||    
T  34420754 ttccaggacttgaacccgtgacctttcagtcacgtgacaacaactttactgttgcgccaa 34420813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 25944615 - 25944447
Alignment:
Q  21 ggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactt 120  Q
    ||||| ||||| ||||| | ||||||||||| |||||||  ||||| |||   | |||||||||||  |||| ||  ||  ||||||||||||| | |      
T  25944615 ggtgcgctaaagctcccacatacgcagggtcagggaaggggtcccaccatt--ttggtgtattgtactcagccttgcccagttttttacacgagaggcgg 25944518  T
Q  121 ttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaaaactcccctt 191  Q
    ||| || |||||||||| |||| || |||||||||||||||||||||||||||||||||||  ||||||||    
T  25944517 tttccaggacttgaacccatgacctttcagtcacgtgacaacaactttactgttgcgccaaggctcccctt 25944447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 26573272 - 26573115
Alignment:
Q  21 ggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactt 120  Q
    ||||||||||| ||| ||| ||||||||||| |||| ||  |||   || |||| ||||||||||| ||||| ||| ||| ||||||||||  | | ||     
T  26573272 ggtgcactaaagctcacgcatacgcagggtccgggatggggtcc---caccaattggtgtattgtacgcagccttaccctgttttttacacaggaggctg 26573176  T
Q  121 ttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||| || ||||||||||  ||| || |||||||||||||||||||||||| ||||||||||    
T  26573175 tttccaggacttgaacccgtgacctttcagtcacgtgacaacaactttaccgttgcgccaa 26573115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 13628800 - 13628948
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||  || ||||||||||| ||||| ||| ||| ||| |||||| || | |    
T  13628800 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat-tattggtgtattgtacgcagccttaccctgtttcttacacaagaggc 13628898  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttt 168  Q
    | ||| || ||||||||||  ||| || |||||||| |||||||||||||    
T  13628899 tgtttccaggacttgaacccgtgacctttcagtcacatgacaacaacttt 13628948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 40272822 - 40272970
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || |      
T  40272822 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgttttttacacaagaggt 40272918  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || |||||||||| |||| ||  ||||||| |||||||||||||||    
T  40272919 tgtttccaggacttgaacccatgaccttccagtcacatgacaacaactttac 40272970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 8247706 - 8247847
Alignment:
Q  28 taaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaa 127  Q
    |||| ||||||| ||||||||||| |||||||| ||||| ||| | | ||||||||||| ||| | ||| ||| |||||||||| || | || ||| ||     
T  8247706 taaagctcccgcatacgcagggtccgggaaggagtcccaccattatt-ggtgtattgtacgcaaccttaccctgttttttacacaagaggctgtttccag 8247804  T
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||||  ||| || |||||||| |||||||||||||||    
T  8247805 gacttgaacccgtgacctttcagtcacatgacaacaactttac 8247847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 46421043 - 46421195
Alignment:
Q  18 accggtgcact-aaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtg 116  Q
    ||||||||||| ||| ||||||| ||||||||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| |||||||||| || |    
T  46421043 accggtgcacttaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctgttttttacacaagag 46421141  T
Q  117 acttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
     || ||| || ||||||||||  ||| || | |||||| |||||||||||||||    
T  46421142 gctgtttccaggacttgaacccgtgacctttaagtcacatgacaacaactttac 46421195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 45948847 - 45948937
Alignment:
Q  18 accggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacac 111  Q
    |||||||||||||| ||||||| ||||||||||| | |||||  ||||| ||   || ||||||||||||||||| ||| ||||||||||||||    
T  45948847 accggtgcactaaagctcccgcatacgcagggtccgagaaggggtcccacca---attggtgtattgtatgcagccttaccctattttttacac 45948937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 9607345 - 9607202
Alignment:
Q  26 actaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttttttc 125  Q
    |||||| ||||||| || || |||||||||||||  ||||| ||| | | |||||||| || ||||| ||| ||| |||||||| | || | || ||| |    
T  9607345 actaaagctcccgcatatgcggggtctgggaaggggtcccaacattatt-ggtgtattctacgcagccttaccctgttttttacgcaagaggctgtttcc 9607247  T
Q  126 aagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | |||||||||| |||| || |||||||| |||||||||||||||    
T  9607246 aggacttgaaccgatgacctttcagtcacatgacaacaactttac 9607202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 22609912 - 22609754
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    |||||||||| || ||||||| |||||| |||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||| |||| || | |    
T  22609912 ccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgttttt-acacaagaggc 22609817  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    | ||| |||||||||||||  | | ||  ||||||| ||||||||||||||| ||||||||||    
T  22609816 tgtttccaagacttgaacccgttaccttacagtcacatgacaacaactttaccgttgcgccaa 22609754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 29366733 - 29366880
Alignment:
Q  22 gtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttt 121  Q
    |||||||||| ||||| | ||||||||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| ||||||| || || | || |    
T  29366733 gtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctgttttttatacaagaggctgt 29366831  T
Q  122 tttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    || || ||||||||||  ||| || | |||||| |||||||||||||||    
T  29366832 ttccaggacttgaacccgtgaccttttagtcacatgacaacaactttac 29366880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 13730612 - 13730762
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| || || ||||| |||||||  ||||| ||| | | |||||||||||  |||| ||| ||| |||||||||| || | |    
T  13730612 ccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt-ggtgtattgtacacagccttaccctgttttttacacaagaggc 13730710  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  13730711 tgtttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 13730762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 45620887 - 45620998
Alignment:
Q  71 caataggtgtattgtatgcagctttagcctatttttt-acacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttta 169  Q
    |||| ||||||||||| ||||| ||| ||| |||||| |||| || | || ||| ||  |||||||||  ||| || |||||||||||||||||||||||    
T  45620887 caattggtgtattgtacgcagccttaccctgtttttttacacaagaggctgtttccagaacttgaacccgtgacctttcagtcacgtgacaacaacttta 45620986  T
Q  170 ctgttgcgccaa 181  Q
    | ||||||||||    
T  45620987 ccgttgcgccaa 45620998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 829581 - 829619
Alignment:
Q  151 tcacgtgacaacaactttactgttgcgccaaaactcccc 189  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  829581 tcacgtgacaacaactttaccgttgcgccaaaactcccc 829619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 26869853 - 26869706
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||| ||| ||||||| |||||| |||| || ||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||| |||| || | |    
T  26869853 ccggtgcaccaaagctcccgcatacgcatggtccggcaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgttttt-acaccagaggc 26869758  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||| ||| || |||||||| |||||||||||||||    
T  26869757 tgtttccaggacttgaacctgtgacctttcagtcacatgacaacaactttac 26869706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 49013483 - 49013574
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacac 111  Q
    ||||||||||||| |||||||||| || ||||| |||||||  ||||| |||  || ||||||||||| ||||| ||| ||| ||||||||||    
T  49013483 ccggtgcactaaagctcccgcgtatgcggggtccgggaaggggtcccaccat-tattggtgtattgtacgcagccttaccctgttttttacac 49013574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 54374357 - 54374490
Alignment:
Q  21 ggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactt 120  Q
    |||| |||||| ||||||| || |||||||| |||||||  ||||| |||   | |||| |||||| ||||| ||| |||||||||||||| || |  |     
T  54374357 ggtgaactaaagctcccgcatatgcagggtccgggaaggggtcccaccatt--ttggtggattgtacgcagccttaccctattttttacacaagaggttg 54374454  T
Q  121 ttttcaagacttgaacctatgaactatcagtcacgt 156  Q
    ||| |||||||||||||| ||| || ||||||||||    
T  54374455 tttccaagacttgaacctgtgacctttcagtcacgt 54374490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 516559 - 516417
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||  |||   | ||| ||||||  ||||| ||| ||| |||||||||| || | |    
T  516559 ccggtgcactaaagctcccgcatacgcagggtcggggaaggggtcccgccattttttggtttattgtgcgcagccttaccctgttttttacacaagaggc 516460  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaa 161  Q
    | ||| || ||||||||||  ||| || |||||||| ||||||    
T  516459 tgtttccaggacttgaacccgtgacctttcagtcacatgacaa 516417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 4495728 - 4495822
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||||| ||||| ||| ||| |||||||||| |  | || |||||| ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  4495728 ggtgtattgtacgcagccttaccctgttttttacacaataggctattttcaggacttgaacccgtgaccttccagtcacatgacaacaactttac 4495822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 353359 - 353451
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacg 112  Q
    ||||||||||||| ||||||| || || ||||| |||||||  ||||| |||  || ||||||||||| ||||| ||| ||| |||||||||||    
T  353359 ccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccat-tattggtgtattgtacgcagccttaccctgttttttacacg 353451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 53996575 - 53996744
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||| | ||||||| ||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || |      
T  53996575 ccggtgcactaaagctcccacatacgcagtgtcagggaaggggtcccaccat--tttggtgtattgtaagcagccttaccctgttttttacacaagaggt 53996672  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaaaactcccct 190  Q
    | ||| || |||||||||   ||| || |||||||  ||||||||| ||||| || |||||||  |||||||    
T  53996673 tgtttccacgacttgaacacgtgacctttcagtcaaatgacaacaaatttaccgtagcgccaaggctcccct 53996744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 54484838 - 54484798
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  54484838 ccggtgcactaaagctcccgcatacgcagggtccgggaagg 54484798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 25343258 - 25343153
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    ||||||||||| ||||| ||| ||| |||||||||| || |||| ||| ||  |||||||||| ||| |||||||||||||||||||||||||||  |||    
T  25343258 ggtgtattgtacgcagccttaccctgttttttacacaagagactatttccagaacttgaacctgtgacctatcagtcacgtgacaacaactttaccattg 25343159  T
Q  176 cgccaa 181  Q
    ||||||    
T  25343158 cgccaa 25343153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 21647091 - 21646941
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| || || |||||||||||||  ||||| ||| | | ||| ||||||| ||||| ||| |||||||||||||| || | |    
T  21647091 ccggtgcactaaagctcccgcatatgcggggtctgggaaggggtcccaccattatt-ggtatattgtacgcagccttaccctattttttacacaagaggc 21646993  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||| ||| ||  ||||||| |||||||||||||||    
T  21646992 tgtttccaggacttgaacctgtgaccttccagtcacatgacaacaactttac 21646941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 35567295 - 35567141
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| |||||||  |||||||||  |||||||  ||||| |||   | ||||| |||||  |||| ||| ||| |||||||||| |||| |    
T  35567295 ccggtgcactaaagctcccgcagacgcagggttcgggaaggggtcccaccat---ttggtgtgttgtacacagccttaccctgttttttacacaagtggc 35567199  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgc 176  Q
    | ||| ||||||||||||| |||| || ||||| || ||||||||||||||| |||||    
T  35567198 tgtttccaagacttgaacccatgacctttcagttacatgacaacaactttaccgttgc 35567141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 47441646 - 47441705
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaaaactcc 187  Q
    ||||||||||| ||| || |||||||||||||||||||||||| ||||||||||| ||||    
T  47441646 gacttgaacctgtgacctttcagtcacgtgacaacaactttaccgttgcgccaaagctcc 47441705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 30690188 - 30690340
Alignment:
Q  21 ggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcc-------tattttttacacga 113  Q
    ||||||||||| ||||||| ||||||||||| |||||||  |||   || |||| ||||||||||||||||| ||| ||       |||||||||||| |    
T  30690188 ggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc---caccaattggtgtattgtatgcagccttaccctgttttttattttttacacaa 30690284  T
Q  114 gtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttta 169  Q
    | | |||||| || ||||||||||  ||| || |||||||| ||||||| ||||||    
T  30690285 gaggctttttccaggacttgaacccgtgacctttcagtcacttgacaaccacttta 30690340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 17043429 - 17043549
Alignment:
Q  44 gcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaa 143  Q
    ||||||||||||||||  ||||| |||   | ||||||||||| ||||| ||| ||| | |||||||| || | || ||| || ||||||||||| |||     
T  17043429 gcagggtctgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgtattttacacaagaggctgtttccaggacttgaacctgtgac 17043525  T
Q  144 ctatcagtcacgtgacaacaactt 167  Q
    || |||||||| ||||||||||||    
T  17043526 ctttcagtcacttgacaacaactt 17043549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 20639668 - 20639758
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacac 111  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||||||||    
T  20639668 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat--tttggtgtattgtacgcagccttaccctgttttttacac 20639758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 487200 - 487304
Alignment:
Q  77 gtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgc 176  Q
    |||||||||| ||||||||| | | |||| ||||| || |  | ||| |||||||||||||  ||| || |||||||| ||||||||||||||| ||| |    
T  487200 gtgtattgtacgcagctttaccttgttttatacacaagaggttgtttccaagacttgaacccgtgacctttcagtcacatgacaacaactttaccgttac 487299  T
Q  177 gccaa 181  Q
    |||||    
T  487300 gccaa 487304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 16911682 - 16911539
Alignment:
Q  26 actaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttttttc 125  Q
    |||||| ||||||||||||||||||| |||||||  ||||| |||  || ||||||||||| ||||| ||| |||  ||| ||||| || | || |||      
T  16911682 actaaagctcccgcgtacgcagggtccgggaaggggtcccaccat-tattggtgtattgtacgcagccttaccctgatttgtacacaagaggctgtttct 16911584  T
Q  126 aagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||||||||||  ||| || | |||||| |||||||||||||||    
T  16911583 aggacttgaacccgtgacctttaagtcacatgacaacaactttac 16911539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 54730376 - 54730213
Alignment:
Q  20 cggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctatttttt-acacgagtgac 118  Q
    |||||||||||| ||||||| ||||||||||| |||||||  | ||||||| | | |||||||| || ||||| ||| |||||||||| |||| || | |    
T  54730376 cggtgcactaaagctcccgcatacgcagggtccgggaaggggttccatcattatt-ggtgtattatacgcagccttatcctatttttttacacaagaggc 54730278  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactg-ttgcgccaaa 182  Q
    | |||  | ||||||||||  ||| || |  ||||| ||||||||||||||| | ||||||||||    
T  54730277 tgtttctaggacttgaacccgtgaccttttggtcacatgacaacaactttaccgattgcgccaaa 54730213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 11054238 - 11054317
Alignment:
Q  104 ttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttta-ctgttgcgccaaa 182  Q
    |||||||| || |||| |||||| ||||||||||  ||| || |||||||| |||||||||||||| | |||||||||||    
T  11054238 ttttacacaagagactgttttcaggacttgaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaa 11054317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 44363140 - 44363290
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||  ||||| |||||  || ||| ||||||||||  | | |    
T  44363140 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat-ttttggtgcgttgtacgcagccctaccctgttttttacacacgaggc 44363238  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | |||||| |||||||||   ||| || |||||||| |||||||||||||||    
T  44363239 tgttttcaggacttgaactcgtgacctttcagtcacatgacaacaactttac 44363290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 54640429 - 54640508
Alignment:
Q  102 ttttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    |||||||||| || | || ||| |||||||||||||  ||| || |||| ||||||||||||| ||||| ||||||||||    
T  54640429 ttttttacacaagaggctgtttccaagacttgaacccgtgacctttcagccacgtgacaacaattttaccgttgcgccaa 54640508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 5648380 - 5648236
Alignment:
Q  22 gtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttt 121  Q
    ||||||| || ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| |||  ||||||||| || | || |    
T  5648380 gtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccct-gtttttacacaagaggctgt 5648285  T
Q  122 tttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    || || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  5648284 ttccaggacttgaacccgtgaccttacagtcacatgacaacaactttac 5648236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 49938681 - 49938759
Alignment:
Q  103 tttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaac-tttactgttgcgcca 180  Q
    ||||||||| || | || ||| || ||||||||||| ||| || ||||||||||||||||||| ||||| |||||||||    
T  49938681 tttttacacaagaggctgtttccaggacttgaacctgtgacctttcagtcacgtgacaacaacttttaccgttgcgcca 49938759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 39029126 - 39029219
Alignment:
Q  77 gtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||||  |||| ||| ||| |||||||||| || | || ||| |||| ||||||||||||| || | ||||||  ||||||||||||||    
T  39029126 gtgtattgtacacagccttaccctgttttttacacaagaggctgtttccaaggcttgaacctatgaccttttagtcacacgacaacaactttac 39029219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 40915953 - 40915806
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    |||||||||| || ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| |||  ||||||||| || | |    
T  40915953 ccggtgcactgaagctcccgcatacgcagggtccgggaagggctcccaccat---ttggtgtattgtacgcagcctta-ccttgtttttacacaagaggc 40915858  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||   |||||| |||||||||||||||    
T  40915857 tgtttccaggacttgaacccgtgaccttatagtcacatgacaacaactttac 40915806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 49938551 - 49938608
Alignment:
Q  125 caagacttgaacctatgaactatcagtcacgtgacaacaac-tttactgttgcgccaa 181  Q
    ||||||||||| || ||| || ||||||||||||||||||| ||||| ||||||||||    
T  49938551 caagacttgaatctgtgacctttcagtcacgtgacaacaacttttaccgttgcgccaa 49938608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 6966114 - 6966070
Alignment:
Q  125 caagacttgaacctatgaactatcagtcacgtgacaacaacttta 169  Q
    |||||||||||||  |||||||||| ||| |||||||||||||||    
T  6966114 caagacttgaacccgtgaactatcactcatgtgacaacaacttta 6966070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 23501914 - 23501823
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacac 111  Q
    ||||||||||||| ||||||| || |||||||| |||||||  ||||| |||  || ||||||||||| ||| | ||| ||| ||||||||||    
T  23501914 ccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccat-tattggtgtattgtacgcaaccttaccctgttttttacac 23501823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 35532117 - 35532077
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  35532117 ccggtgcactaaagctcccgcatacgcagggtccgggaagg 35532077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 38755918 - 38755958
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  38755918 ccggtgcactaaagctcccgcatacgcagggtccgggaagg 38755958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 40553947 - 40553987
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  40553947 ccggtgcactaaagctcccgcatacgcagggtccgggaagg 40553987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 42164261 - 42164317
Alignment:
Q  125 caagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    |||||||||||||  ||| || |||||||| ||||||||| ||||| ||||||||||    
T  42164261 caagacttgaacccgtgacctttcagtcacatgacaacaattttaccgttgcgccaa 42164317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 44718684 - 44718636
Alignment:
Q  27 ctaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaata 75  Q
    ||||| ||||||| |||||||||||||||||||  ||||| ||||||||    
T  44718684 ctaaagctcccgcatacgcagggtctgggaaggggtcccaccatcaata 44718636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 54967039 - 54966987
Alignment:
Q  129 acttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    |||||||| | ||| || |||||||| ||||||||||||||| ||||||||||    
T  54967039 acttgaacatgtgacctttcagtcacatgacaacaactttaccgttgcgccaa 54966987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 23768334 - 23768478
Alignment:
Q  23 tgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactttt 122  Q
    ||||||||| ||||||| |||||||||||||||||||  ||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || | || ||    
T  23768334 tgcactaaagctcccgcatacgcagggtctgggaaggtgtcccaccat---ttggtgtattgtacgcagccttaccctgttttttacacaagaggctgtt 23768430  T
Q  123 ttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | || ||||||||||| ||| ||  ||||||| |||||||||||||||    
T  23768431 tccatgacttgaacctgtgaccttacagtcacatgacaacaactttac 23768478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 27474428 - 27474281
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||  |   |||||||||| ||||||||  ||| ||||| |||| || |||    
T  27474428 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattca---gtgtattgtacgcagctttgccctgttttt-acacaagagac 27474333  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| |||||||||||||| ||| || |||||||| |||||||||||||||    
T  27474332 tgtttccaagacttgaacctgtgacctttcagtcacatgacaacaactttac 27474281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 45812547 - 45812705
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||| | ||||||| || ||||||| ||||||||  ||||| |||   | ||||||||||||||||| ||| ||| ||||  |||| || |||    
T  45812547 ccggtgcactagagctcccgcatatgcagggtttgggaaggggtcccaccat---ttggtgtattgtatgcagccttaccctctttt--acacaagagac 45812641  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttta-ctgttgcgccaa 181  Q
    | |||||| ||||||||||| ||| || |||||||| |||||||||||||| | ||||||||||    
T  45812642 tgttttcaggacttgaacctgtgacctttcagtcacatgacaacaactttatcagttgcgccaa 45812705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 35005273 - 35005137
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| | ||||| ||||||||||| |||||||  ||||| |||   | ||||||||||||||||| ||| ||| |||||||||| || | |    
T  35005273 ccggtgcactaaagcgcccgcatacgcagggtccgggaaggggtcccaccattttt-ggtgtattgtatgcagccttaccctgttttttacacaagaggc 35005175  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgt 156  Q
    | |||||||||||||||||  ||| || ||||||||||    
T  35005174 tgttttcaagacttgaacccgtgacctttcagtcacgt 35005137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 20004100 - 20004250
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| || || |||||||||||||  ||||| ||| | | ||||||||||| ||||| ||| | | ||||||||||||| | |    
T  20004100 ccggtgcactaaagctcccgcatatgcggggtctgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccttgttttttacacgagaggc 20004198  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  20004199 tgtttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 20004250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 46247963 - 46248111
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||| ||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||  ||| ||| |||||||||| || | |    
T  46247963 ccggtacactaaagctcccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagtcttaccctgttttttacacaagaggc 46248059  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| |||||||||||||  |||  | |||||||| |||||||||||||||    
T  46248060 tgtttccaagacttgaacccgtgacatttcagtcacatgacaacaactttac 46248111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 6925247 - 6925100
Alignment:
Q  20 cggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgact 119  Q
    |||||||||||| ||||||| ||||||||| | |||||||  ||||| |||   | ||||||||||  ||||| ||| |||||||||||||| || | ||    
T  6925247 cggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccat---tcggtgtattgtccgcagccttaccctattttttacacaagaggct 6925151  T
Q  120 tttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
     ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  6925150 atttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 6925100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 18944794 - 18944643
Alignment:
Q  19 ccggtgcactaaat-ctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtga 117  Q
    |||||||||||||  ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || |     
T  18944794 ccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattgtt-ggtgtattgtacgcagccttaccctgttttttacacaagagg 18944696  T
Q  118 cttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    || ||| || | ||||||||| ||| || |||||||| |||||||||||||||    
T  18944695 ctgtttccaggccttgaacctgtgacctttcagtcacatgacaacaactttac 18944643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 41319870 - 41319964
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||||| ||||| ||| ||| |||||||||| || |||| ||| || ||||| ||||| ||| || |||||||| |||||||||||||||    
T  41319870 ggtgtattgtacgcagccttaccctgttttttacacaagagactgtttccaggacttaaacctgtgacctttcagtcacatgacaacaactttac 41319964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 2435851 - 2435956
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    ||||||||||| ||||  ||| ||||||||| ||||  | | || ||| || ||||||||||  ||| || |||||||||||||||||||||||| ||||    
T  2435851 ggtgtattgtacgcaggcttaccctatttttcacacaggaggctgtttccaggacttgaacccgtgacctttcagtcacgtgacaacaactttaccgttg 2435950  T
Q  176 cgccaa 181  Q
    ||||||    
T  2435951 cgccaa 2435956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 17470410 - 17470515
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    ||||||||||| ||||| ||| ||| |||||||||| || | || |||  | |||||||||| |||| |  |||||||||||||||||||||||| ||||    
T  17470410 ggtgtattgtacgcagccttaccctgttttttacacaagaggctgtttctaggacttgaacccatgaccattcagtcacgtgacaacaactttaccgttg 17470509  T
Q  176 cgccaa 181  Q
    | ||||    
T  17470510 caccaa 17470515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 18724609 - 18724714
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    |||||||||||  |||| ||| ||| |||||||||| || | || ||| || ||||||||||  ||| || |||||||| ||||||||||||||| ||||    
T  18724609 ggtgtattgtacacagccttaccctgttttttacacaagaggctgtttccaggacttgaacccgtgacctttcagtcacatgacaacaactttaccgttg 18724708  T
Q  176 cgccaa 181  Q
    ||||||    
T  18724709 cgccaa 18724714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 35019377 - 35019219
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||| ||| |||||||||||||||| || | ||    | |||| ||||||||||||||||| |||  ||  |||||| || || |      
T  35019377 ccggtgcactaaagctctcgcatacgcagggtctgggaggggtccc----accaattggtgtattgtatgcagccttatactgatttttatacaagaggt 35019282  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    | ||| || |||||||| || ||| || ||||||| |||||||||||||||| ||||||||||    
T  35019281 tgtttacaggacttgaatctgtgacctttcagtcatgtgacaacaactttaccgttgcgccaa 35019219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 35117775 - 35117926
Alignment:
Q  19 ccggtgcactaaatctcccgcgt-acgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtga 117  Q
    ||||||||||||| |||| || | |||||||||| |||||||  |||||||||   | |||||||||||  |||| ||| ||| | |||||||| || |     
T  35117775 ccggtgcactaaagctcctgcattacgcagggtccgggaaggggtcccatcattttt-ggtgtattgtacacagccttaccctgtattttacacaagagg 35117873  T
Q  118 cttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    || ||| || ||||||||||  ||| || ||||||||||||||||||||||||    
T  35117874 ctatttccaggacttgaacccgtgacctttcagtcacgtgacaacaactttac 35117926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 27201793 - 27201647
Alignment:
Q  23 tgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactttt 122  Q
    ||||||||| ||||||| |||||| |||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||| | |||| || | || ||    
T  27201793 tgcactaaagctcccgcatacgcaaggtccgggaaggggtcccaccattttt-ggtgtattgtacgcagccttaccctgtttctgacacaagaggctgtt 27201695  T
Q  123 ttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | || |||||||||| |||| || |||||||| |||||||||||||||    
T  27201694 tccaggacttgaacccatgacctttcagtcacatgacaacaactttac 27201647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 30395737 - 30395886
Alignment:
Q  20 cggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgact 119  Q
    |||||||||||| ||||||| || || ||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| |||||||||| || | ||    
T  30395737 cggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctgttttttacacaagaggct 30395835  T
Q  120 tttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
     ||| || ||||||||||  ||| ||   |||||| |||||||||||||||    
T  30395836 gtttccaggacttgaacccgtgaccttaaagtcacatgacaacaactttac 30395886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 6983925 - 6983978
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||||||||| ||| || ||||||||||||||||||||||||  |||||||||    
T  6983925 gacttgaacctgtgacctttcagtcacgtgacaacaactttaccattgcgccaa 6983978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 46991952 - 46991804
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||| | ||||||||||| |||||||  ||||| |||   | |||||||||||  |||| ||| ||| |||||||||| || |      
T  46991952 ccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccat---tcggtgtattgtacacagccttaccctgttttttacacaagaggt 46991856  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  46991855 tgtttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 46991804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 4349786 - 4349699
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttac 109  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||||||    
T  4349786 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgttttttac 4349699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 45402244 - 45402204
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  45402244 ccggtgcactaaagctcccgcatacgcagggtctgggaagg 45402204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 43207512 - 43207465
Alignment:
Q  147 tcagtcacgtgacaacaactttactgttgcgccaaaactcccctttga 194  Q
    |||||||||||||||||||||||| ||||||||||  |||||| ||||    
T  43207512 tcagtcacgtgacaacaactttaccgttgcgccaaggctcccccttga 43207465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 50811962 - 50811919
Alignment:
Q  147 tcagtcacgtgacaacaactttactgttgcgccaaaactcccct 190  Q
    |||||||||||||||||||||||| ||||||||||  |||||||    
T  50811962 tcagtcacgtgacaacaactttaccgttgcgccaaggctcccct 50811919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 4430090 - 4430184
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||||| ||||  ||| ||| |||||||||| ||  ||| |||||||||||| ||||  ||| ||  ||||||| |||||||||||||||    
T  4430090 ggtgtattgtacgcagtcttaccctgttttttacacaagatactgttttcaagacttaaacccgtgaccttccagtcacatgacaacaactttac 4430184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 28894666 - 28894700
Alignment:
Q  147 tcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    |||||||| ||||||||||||||||||||||||||    
T  28894666 tcagtcacatgacaacaactttactgttgcgccaa 28894700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 46859094 - 46859060
Alignment:
Q  147 tcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||||| |||||||||||||||||||||||||||    
T  46859094 tcagtcaagtgacaacaactttactgttgcgccaa 46859060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 49546024 - 49546082
Alignment:
Q  129 acttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaaaactcc 187  Q
    |||||||||| | | || |||| ||||||||||||||||||| ||||||||||| ||||    
T  49546024 acttgaacctgtaacctttcagccacgtgacaacaactttaccgttgcgccaaagctcc 49546082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 2436009 - 2436062
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||||||||  ||| || |||||||||||||||||||||||| ||||| ||||    
T  2436009 gacttgaacccgtgacctttcagtcacgtgacaacaactttaccgttgcaccaa 2436062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 14617186 - 14617038
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| || |||||||| |||||||  ||||| |||   | ||||||||||| ||| | ||| | | || ||||||| || | |    
T  14617186 ccggtgcactaaagctcccgcatatgcagggtccgggaagggatcccaccat---ttggtgtattgtacgcaaccttaccttgttatttacacaagaggc 14617090  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || |||||||||   ||| || |||||||| |||||||||||||||    
T  14617089 tgtttccaggacttgaactcgtgacctttcagtcacatgacaacaactttac 14617038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 18741967 - 18742119
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcct-attttttacacgagtga 117  Q
    ||||||||||||| ||| ||| |||||||||||||||||||  ||||| |||   | ||||||||||| ||||| ||| |||  ||||||| || |  ||    
T  18741967 ccggtgcactaaagctctcgcatacgcagggtctgggaaggggtcccaccat-ttttggtgtattgtacgcagccttaccctgtttttttatacaaaaga 18742065  T
Q  118 ct-tttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    || |||  ||||| |||||||  ||| || |||||||| |||||||||||||||    
T  18742066 ctgtttcccaagatttgaacccttgacctttcagtcacatgacaacaactttac 18742119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 33594144 - 33594181
Alignment:
Q  22 gtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  33594144 gtgcactaaagctcccgcatacgcagggtctgggaagg 33594181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 52910262 - 52910206
Alignment:
Q  125 caagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||| |||||||| ||| || |||||||| ||||||||||||||| ||||| ||||    
T  52910262 caagagttgaacctgtgacctttcagtcacatgacaacaactttaccgttgcaccaa 52910206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 12221924 - 12222075
Alignment:
Q  19 ccggtgcactaaat-ctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtga 117  Q
    |||||||||||||  ||||||| ||||||||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| |||||||||| || |     
T  12221924 ccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctgttttttacacaagagg 12222022  T
Q  118 cttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    || ||| |||||||||||||  ||| || |||||||| |||||||||||||||    
T  12222023 ctgtttccaagacttgaacccgtgacctttcagtcacatgacaacaactttac 12222075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 12889499 - 12889392
Alignment:
Q  74 taggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgt 173  Q
    ||||||||||||||||||| ||  ||| ||||| |||| || | || |||||||||||||||||| ||| || ||| |||||||||||||||||||| ||    
T  12889499 taggtgtattgtatgcagccttgccctgtttttaacacaagaggctgttttcaagacttgaacctgtgacctttcactcacgtgacaacaactttaccgt 12889400  T
Q  174 tgcgccaa 181  Q
    || |||||    
T  12889399 tgtgccaa 12889392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 29355865 - 29356009
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||  || ||||||||||| ||||| ||| ||| ||| |||||| || | |    
T  29355865 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat-tattggtgtattgtacgcagccttaccctgtttcttacacaagaggc 29355963  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaa 164  Q
    | ||| || ||||||||||  ||| || |||||||| |||||||||    
T  29355964 tgtttccaggacttgaacccgtgacctttcagtcacatgacaacaa 29356009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 2755429 - 2755582
Alignment:
Q  18 accggtgcactaaatctcccgcg--tacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagt 115  Q
    |||||||||||||| ||||||||  || ||||| | ||||||||| ||||| |||   | ||||||||||| ||||| |||||||||||||   |  ||     
T  2755429 accggtgcactaaagctcccgcgcatatgcaggatttgggaaggactcccaccattttt-ggtgtattgtacgcagccttagcctatttttggtataaga 2755527  T
Q  116 gacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    |  | ||| ||||||||||||||| || || |||||||| |||||||||||||||    
T  2755528 ggatgtttgcaagacttgaacctacgacctttcagtcacatgacaacaactttac 2755582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 1347087 - 1346941
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||| | ||||||| || |||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||  |||| |||| |    
T  1347087 ccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgtttt--acacaagtggc 1346993  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| || |||||||| |||||||||||||||    
T  1346992 tgtttccaggacttgaacccgtgacctttcagtcacatgacaacaactttac 1346941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 13905043 - 13905148
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    |||| |||||||||||| ||| ||| |||||||||| || |    |||||| ||||||| ||  ||| || |||||||| ||||||||||||||| ||||    
T  13905043 ggtgaattgtatgcagccttaccctgttttttacacaagaggtcgttttcaggacttgagcccgtgacctttcagtcacatgacaacaactttaccgttg 13905142  T
Q  176 cgccaa 181  Q
    ||||||    
T  13905143 cgccaa 13905148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 1354767 - 1354913
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||| | ||||||| || |||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||  |||| || | |    
T  1354767 ccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgtttt--acacaagaggc 1354861  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| || |||||||| |||||||||||||||    
T  1354862 tgtttccaggacttgaaccagtgacctttcagtcacatgacaacaactttac 1354913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 12886038 - 12885998
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||| | |||||||||||||||||||    
T  12886038 ccggtgcactaaagctcccacatacgcagggtctgggaagg 12885998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 44781517 - 44781675
Alignment:
Q  22 gtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttt 121  Q
    |||||||||| ||||||| |||||||||||||||| ||  ||||| |||   | |||||||||||  |||| ||| ||| | |||||||| || |  | |    
T  44781517 gtgcactaaagctcccgcatacgcagggtctgggacggggtcccaacattttt-ggtgtattgtacacagccttaccctgtcttttacacaagaggttgt 44781615  T
Q  122 tttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    || || ||||||||||  |||||| |||||||||||||||||||||||| ||||||||||    
T  44781616 ttccaggacttgaacccgtgaactttcagtcacgtgacaacaactttaccgttgcgccaa 44781675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 28817640 - 28817784
Alignment:
Q  23 tgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactttt 122  Q
    ||||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || | || ||    
T  28817640 tgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat---tgggtgtattgtacgcagccttaccctgttttttacacaagaggctgtt 28817736  T
Q  123 ttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  28817737 tccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 28817784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 29521695 - 29521855
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| |||||||||||||||| || |||||| |||   | ||||||||||| ||||| ||| ||| ||||||| || || | |    
T  29521695 ccggtgcactaaagctcccgcatacgcagggtctgggatgggttcccaccat---ttggtgtattgtacgcagccttaccctgttttttaaacaagaggc 29521791  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttta-ctgttgcgccaa 181  Q
    | ||| || ||||||||||  ||| ||  |||||||  ||||||||||||| | ||||||||||    
T  29521792 tgtttccaggacttgaacccgtgaccttccagtcacacgacaacaactttatcagttgcgccaa 29521855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 14018034 - 14018138
Alignment:
Q  77 gtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgc 176  Q
    |||||||||| ||||  | | ||| |||||||||| || |||| ||| ||||||||||||| |||| || ||| ||||||||||||||| |||| |||||    
T  14018034 gtgtattgtacgcagtctcaccctgttttttacacaagagactgtttccaagacttgaacccatgacctttcaatcacgtgacaacaacattaccgttgc 14018133  T
Q  177 gccaa 181  Q
    |||||    
T  14018134 gccaa 14018138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 36720919 - 36720773
Alignment:
Q  21 ggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactt 120  Q
    ||||||||||| || |||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || | ||     
T  36720919 ggtgcactaaagcttccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgttttttacacaagaggctg 36720823  T
Q  121 ttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  36720822 tttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 36720773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 39461004 - 39461154
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  || || |||  || ||||||||||| ||||| |||  || |||||||||| || | |    
T  39461004 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtctcaccat-tattggtgtattgtacgcagccttactctgttttttacacaagaggc 39461102  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| || |||||| | |||||||||||||||    
T  39461103 tgtttccaggacttgaacccgtgacctttcagtctcatgacaacaactttac 39461154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 20284079 - 20284231
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctatttttt--acacgagtg 116  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| ||||||  | || || |    
T  20284079 ccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttacccttttttttttatacaagag 20284177  T
Q  117 acttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
     || ||| || ||||||||||  ||| || |||||||| |||||||||||||||    
T  20284178 gctgtttccaggacttgaacccgtgacctttcagtcacatgacaacaactttac 20284231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 35261804 - 35261656
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| |||||||||||  ||||||  ||||| |||   | ||||||||||| ||| | ||| ||| |||||||||| || |||    
T  35261804 ccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccat---ttggtgtattgtacgcaaccttaccctgttttttacacaagagac 35261708  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || | ||||||||  ||| ||  ||||||| |||||||||||||||    
T  35261707 tgtttccagggcttgaacccgtgaccttccagtcacatgacaacaactttac 35261656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 21070707 - 21070860
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcc---tattttttacacgagt 115  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||  || ||||||||||| ||||| ||| ||   | ||||||| || ||     
T  21070707 ccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccat-tattggtgtattgtacgcagccttaccctttttttttttatacaaga 21070805  T
Q  116 gacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | || ||| || ||||||||||  ||| || |||||||| |||||||||||||||    
T  21070806 ggctgtttccaggacttgaacccgtgacctttcagtcacatgacaacaactttac 21070860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 7136537 - 7136687
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| || || ||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| |||  ||||||||| || |      
T  7136537 ccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctggtttttacacaagaggt 7136635  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || |||||||||| |||| ||  ||||||| |||||||||||||||    
T  7136636 tgtttccaggacttgaacccatgaccttccagtcacatgacaacaactttac 7136687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 25250649 - 25250499
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||||||||||| || || ||||  |||||||  ||||| |||  || ||||||||||| |||||  || |||||||||||||| |  | |    
T  25250649 ccggtgcactaaatctcccgcatatgcggggttcgggaaggggtcccaccat-tattggtgtattgtacgcagccataccctattttttacacaataggc 25250551  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||| | ||| ||  ||||||| |||||||||||||||    
T  25250550 tgtttccaggacttgaacatgtgaccttccagtcacatgacaacaactttac 25250499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 44530274 - 44530126
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| |||||||||||  ||||||  ||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || |      
T  44530274 ccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgttttttacacaagaggt 44530178  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| |||||||||||||  ||| ||   |||||| ||||| |||||||||    
T  44530177 tgtttccaagacttgaacccgtgaccttctagtcacatgacagcaactttac 44530126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 8483948 - 8484107
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||| ||||| ||||||| |||||||||||||||| ||  |||   || |||| ||||||||||| ||||| ||  ||| |||||||||| || |      
T  8483948 ccggtgccctaaagctcccgcatacgcagggtctgggatggggtcc---caccaattggtgtattgtacgcagccttgccctgttttttacacaagaggt 8484044  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    | ||| || |||||||||| ||||  | | ||||||||| ||||  |||||| ||||||||||    
T  8484045 tgtttccaggacttgaacccatgacatttaagtcacgtggcaaccgctttaccgttgcgccaa 8484107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 26457760 - 26457681
Alignment:
Q  102 ttttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    |||||||||| ||  ||| |||| ||||| |||||| |||| || ||| ||||| |||||||||||||| ||||||||||    
T  26457760 ttttttacacaagaaactctttttaagacctgaacccatgacctttcaatcacgcgacaacaactttaccgttgcgccaa 26457681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 12670260 - 12670406
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||| | ||||||| || |||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||  |||| || | |    
T  12670260 ccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgtttt--acacaagaggc 12670354  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| || |||||||| |||||||||||||||    
T  12670355 tgtttccaggacttgaacccgtgacctttcagtcacatgacaacaactttac 12670406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 42083815 - 42083868
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||||||||  ||| || |||||||||||||||||| ||||| ||||||||||    
T  42083815 gacttgaacccgtgacctttcagtcacgtgacaacaattttaccgttgcgccaa 42083868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16013581 - 16013541
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| || ||||||||||||||||    
T  16013581 ccggtgcactaaagctcccgcataggcagggtctgggaagg 16013541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 29877217 - 29877130
Alignment:
Q  21 ggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacac 111  Q
    ||||||||||  ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||||||||    
T  29877217 ggtgcactaacgctcccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgttttttacac 29877130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 1599 - 1743
Alignment:
Q  21 ggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgactt 120  Q
    ||||||||||| ||||||| ||||| ||||| |||||||  |||||||||   | ||||||||||||||||| ||| ||| ||||  |||| || |  |     
T  1599 ggtgcactaaagctcccgcatacgccgggtccgggaaggggtcccatcat---ttggtgtattgtatgcagccttatcctgtttt--acacaagaggttg 1693  T
Q  121 ttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    |||||| |||||||||| |||| || |||||||| |||||||||||||||    
T  1694 ttttcaggacttgaacccatgacctttcagtcacatgacaacaactttac 1743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 10543825 - 10543663
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || | |    
T  10543825 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattttt-ggtgtattgtacgcagccttaccctgttttttacacaagaggc 10543727  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttta-ctgttgcgccaa 181  Q
      ||| || ||||||||||  ||| || |||||||| |||||||||||||| | ||||||||||    
T  10543726 cgtttccaggacttgaacccgtgacctttcagtcacatgacaacaactttatcagttgcgccaa 10543663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 14530445 - 14530295
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||  || ||||||||||| | ||| ||| ||| ||||||| || || | |    
T  14530445 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat-tattggtgtattgtacgtagccttaccctgttttttatacaagaggc 14530347  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| || |||||||| |||||||||||||||    
T  14530346 tgtttccaggacttgaacccgtgacctttcagtcacatgacaacaactttac 14530295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 7214604 - 7214511
Alignment:
Q  77 gtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    |||||||||| ||||| ||| ||| | |||||||| || |||| ||| ||||||||||||| |||| || |||||||| |||||||||||||||    
T  7214604 gtgtattgtacgcagccttaccctgtattttacacaagagactgtttccaagacttgaacccatgacctttcagtcacatgacaacaactttac 7214511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 99379 - 99443
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaaaactccccttt 192  Q
    ||||||||||  ||| || |||||||||||||||||||||||||||||||||||  |||||||||    
T  99379 gacttgaacccgtgacctttcagtcacgtgacaacaactttactgttgcgccaaggctccccttt 99443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 8455326 - 8455474
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| |||| || ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| | |||||||| || | |    
T  8455326 ccggtgcactaaagctccggcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgtgttttacacaagaggc 8455422  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  8455423 tgtttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 8455474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 23145757 - 23145856
Alignment:
Q  71 caataggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    |||| ||||||||||| ||||| |||  || |||||||||| || | || |||||||||||||||||  ||| || |||||||||  |||||||||||||    
T  23145757 caattggtgtattgtacgcagccttacactgttttttacacaagagtctgttttcaagacttgaacccgtgacctttcagtcacgctacaacaactttac 23145856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 23557547 - 23557646
Alignment:
Q  71 caataggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    |||| ||||||||||| ||||| |||  || |||||||||| || | || |||||||||||||||||  ||| || |||||||||  |||||||||||||    
T  23557547 caattggtgtattgtacgcagccttacactgttttttacacaagagtctgttttcaagacttgaacccgtgacctttcagtcacgctacaacaactttac 23557646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 24200633 - 24200783
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||| | | ||| ||||||| ||||||| |||||| |||   | ||||||||||| ||||| ||| ||| |||||||||| || | |    
T  24200633 ccggtgcactaaagctctcacatactcagggtccgggaagggttcccaccattttt-ggtgtattgtacgcagccttaccctgttttttacacaagaggc 24200731  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  |||  | |||||||| |||||||||||||||    
T  24200732 tgtttccaggacttgaacccgtgacttttcagtcacatgacaacaactttac 24200783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 11514560 - 11514413
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| |||||||||||||||||||  ||||| |||   | ||||||||||| ||||| |||   | |||||||||| || | |    
T  11514560 ccggtgcactaaagctcccgcatacgcagggtctgggaagg-gtcccaccat---ttggtgtattgtacgcagccttactttgttttttacacaagaggc 11514465  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || || |||||||  ||| ||  ||||||| |||||||||||||||    
T  11514464 tgtttccaggagttgaacccgtgaccttccagtcacatgacaacaactttac 11514413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 4516361 - 4516520
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||| ||||||| || || | ||||||||||| |||||||  ||||| ||   || ||||||||||| ||||| ||  ||| |||||||||| || | |    
T  4516361 ccggtacactaaagcttccacatacgcagggtccgggaaggggtcccacca---attggtgtattgtacgcagcgttgccctgttttttacacaagaggc 4516457  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    | |||  |  |||||||  | ||| || |||||||||||||||||||||||| ||||||||||    
T  4516458 tgtttctagaacttgaatatgtgacctttcagtcacgtgacaacaactttaccgttgcgccaa 4516520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 10546288 - 10546203
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctatttttt 107  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||||    
T  10546288 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctgtttttt 10546203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 25249748 - 25249895
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||| ||| ||||||||||  |||||||  ||||| |||   | ||||||||||| ||||| ||| |||  ||| ||||| || |||    
T  25249748 ccggtgcactaaagctcacgcatacgcagggttcgggaagggatcccaccat---ttggtgtattgtacgcagccttaccct-gtttgtacacaagagac 25249843  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  25249844 tgtttccatgacttgaacccgtgaccttacagtcacatgacaacaactttac 25249895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 44521437 - 44521542
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    |||||||| |||||||| ||| | | |||||||||| || || | ||| ||||| ||||||   ||| || |||||||||||| ||||||||||| |||     
T  44521437 ggtgtattatatgcagccttaccttgttttttacacaagagattgtttccaagatttgaacgcgtgacctttcagtcacgtgataacaactttaccgttc 44521536  T
Q  176 cgccaa 181  Q
    ||||||    
T  44521537 cgccaa 44521542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 9671304 - 9671264
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  9671304 ccggtgcactaaagctcccgcatacgcagggtccgggaagg 9671264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 44643648 - 44643608
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaagg 59  Q
    ||||||||||||  ||||||| |||||||||||||||||||    
T  44643648 ccggtgcactaaggctcccgcatacgcagggtctgggaagg 44643608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 19266561 - 19266416
Alignment:
Q  33 ctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagactt 132  Q
    ||||||| ||||||||||| |||||||  |||||  ||   | ||||||||||| ||||| ||| ||| |||||||| | |||| || |||||| |||||    
T  19266561 ctcccgcatacgcagggtccgggaagggatcccacaat---ttggtgtattgtacgcagccttaccctgttttttacgcaagtggctattttcaggactt 19266465  T
Q  133 gaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||| | || || |||||||| ||||||||||||||| ||||| ||||    
T  19266464 gaacccacgacctttcagtcacatgacaacaactttaccgttgcaccaa 19266416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 19265885 - 19265781
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    ||||||||||| ||||| ||| ||| ||||| |||| || | || | | |||||||||||||  ||| || |||||||||||||||||||||||| ||||    
T  19265885 ggtgtattgtacgcagccttaccctcttttt-acacaagcggctgtatccaagacttgaacccgtgacctttcagtcacgtgacaacaactttaccgttg 19265787  T
Q  176 cgccaa 181  Q
    ||||||    
T  19265786 cgccaa 19265781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 48123548 - 48123653
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    |||||||||||||||| |||| ||| || ||||||| || | || ||| || |||||||||| |||| || |||| ||| ||| ||||||||||| ||||    
T  48123548 ggtgtattgtatgcagttttaccctgttatttacacaagaggctgtttccaggacttgaacccatgacctttcagacacatgataacaactttaccgttg 48123647  T
Q  176 cgccaa 181  Q
    ||||||    
T  48123648 cgccaa 48123653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 38262206 - 38262321
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||| ||  |||||||  |||||||||   | ||||||||||||||| | ||| | |||||||||||| || |||    
T  38262206 ccggtgcactaaagctcccgcatacgcagtgttcgggaaggggtcccatcat---ttggtgtattgtatgcaacattaccatattttttacacaagagac 38262302  T
Q  119 ttttttcaagacttgaacc 137  Q
    | ||| || ||||||||||    
T  38262303 tgtttccaggacttgaacc 38262321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 43557600 - 43557449
Alignment:
Q  19 ccggtgcactaaat-ctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtga 117  Q
    |||||||||||||  ||||||| ||||||| ||| |||| ||  ||||| ||| | | ||||||||||| ||||| |||  || |||||||||| || |     
T  43557600 ccggtgcactaaaagctcccgcatacgcagagtccgggagggggtcccaccattatt-ggtgtattgtacgcagccttactctgttttttacacaagagg 43557502  T
Q  118 cttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    || ||| || |||||||||| |||| || |||||||| |||||||||||||||    
T  43557501 ctgtttccaggacttgaacccatgacctttcagtcacatgacaacaactttac 43557449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 42805651 - 42805501
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| || || ||||| |||||||  ||||| ||| | | |||||||||||  |||| ||| ||| |||||||||| || | |    
T  42805651 ccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt-ggtgtattgtacacagccttaccctgttttttacacaagaggc 42805553  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| ||  ||||||| |||||||||||||||    
T  42805552 tgtttccaggacttgaacccgtgaccttccagtcacatgacaacaactttac 42805501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 2541029 - 2541178
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| ||||||| ||||||||| | |||||||  ||||| |||   | ||||||| ||| ||||| ||| ||| |||||||||| || | |    
T  2541029 ccggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccat---ttggtgtatagtacgcagccttaccctgttttttacacaagaggc 2541125  T
Q  119 ttttttcaagacttgaacctatgaactat-cagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| || | ||||||| |||||||||||||||    
T  2541126 tgtttccaggacttgaacccgtgacctttccagtcacatgacaacaactttac 2541178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 22699034 - 22699128
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||||| ||||  ||| ||| |||||||||| || |||| ||| || |||||||||| || | || |||||||| |||||||||||||||    
T  22699034 ggtgtattgtacgcagtcttaccctgttttttacacaagagactatttccaggacttgaacccataacctttcagtcacatgacaacaactttac 22699128  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 42798740 - 42798646
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||||| ||||| ||| | | |||||||||| || |||| ||| |||||||||||||  ||| ||  ||||||| |||||||||||||||    
T  42798740 ggtgtattgtacgcagccttaccttgttttttacacaagagactgtttccaagacttgaacccgtgaccttccagtcacatgacaacaactttac 42798646  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 11617598 - 11617746
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    |||||||||||||  ||| || |||||||||||  ||||||  ||||| |||   | ||||||||||| ||||  ||| ||| |||||||||| || |      
T  11617598 ccggtgcactaaaggtcctgcatacgcagggtccaggaaggggtcccaccat---ttggtgtattgtacgcagtcttaccctgttttttacacaagaggt 11617694  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||| ||| || |||||||| |||||||||||||||    
T  11617695 tgtttccaggacttgaacctgtgacctttcagtcacatgacaacaactttac 11617746  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 10693086 - 10693241
Alignment:
Q  22 gtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgacttt 121  Q
    |||||||| | ||||||| || |||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| ||| ||||  |||| || | || |    
T  10693086 gtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccctctttt--acacaagaggctgt 10693180  T
Q  122 tttcaagacttgaacctatgaactatcagtcacgtgacaacaactttact-gttgcgccaa 181  Q
    || || ||||||||||  ||| || |||||||| |||||||||||||||| ||||||||||    
T  10693181 ttccaggacttgaacccgtgacctttcagtcacatgacaacaactttactagttgcgccaa 10693241  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 19426953 - 19427047
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    ||||||||||| ||||  ||| |||||||||||||| || | || ||| || ||||||||||  ||| || || ||||| |||||||||||||||    
T  19426953 ggtgtattgtacgcagtcttaccctattttttacacaagaggctgtttccaggacttgaacccgtgacctttcggtcacatgacaacaactttac 19427047  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 35334826 - 35334972
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| |||| || ||||||||||| |||||||  ||||| |||   | |||||||||||  |||  ||| ||| ||||||||||||  |||    
T  35334826 ccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccaccat---tcggtgtattgtacacagtcttaccctgttttttacacga--gac 35334920  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || |||||||||   ||| ||  ||||||| |||||||||||||||    
T  35334921 tgtttccaggacttgaactcgtgaccttccagtcacatgacaacaactttac 35334972  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 11741864 - 11741774
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttt 168  Q
    ||||||||||| ||||| ||| ||||||||  |||| ||   || |||||| |||||||||| |||| || |||||||| |||||||||||||    
T  11741864 ggtgtattgtacgcagccttaccctatttt--acactagaagctgttttcaggacttgaacccatgacctttcagtcacatgacaacaacttt 11741774  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 23419738 - 23419843
Alignment:
Q  76 ggtgtattgtatgcagctttagcctattttttacacgagtgacttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttactgttg 175  Q
    ||||||||||| ||||  ||| ||| |||||||||| || | || ||| ||  |||||||||| ||| || | |||||| ||||| ||||||||| ||||    
T  23419738 ggtgtattgtacgcagtcttaccctgttttttacacaagaggctgtttccagaacttgaacctgtgaccttttagtcacatgacagcaactttaccgttg 23419837  T
Q  176 cgccaa 181  Q
    ||||||    
T  23419838 cgccaa 23419843  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 28362261 - 28362314
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    ||||||||||| ||| || |||| ||| ||||||||||||||| ||||||||||    
T  28362261 gacttgaacctgtgacctttcagccacatgacaacaactttaccgttgcgccaa 28362314  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 32233250 - 32233303
Alignment:
Q  128 gacttgaacctatgaactatcagtcacgtgacaacaactttactgttgcgccaa 181  Q
    |||||||||| |||| || ||||||| |||||||||| ||| ||||||||||||    
T  32233250 gacttgaacccatgacctttcagtcaggtgacaacaatttttctgttgcgccaa 32233303  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 36602572 - 36602535
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctggga 56  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  36602572 ccggtgcactaaagctcccgcatacgcagggtctggga 36602535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 47716586 - 47716438
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||| ||| ||||||| || || ||||| |||||||  ||||| ||| | | ||||||||||| ||||| ||| ||| |||||||||| || | |    
T  47716586 ccggtgcaccaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt-ggtgtattgtacgcagccttaccctgttttttacacaagaggc 47716488  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaacttt 168  Q
    | ||| || ||||||||||  ||| ||  ||||||| || ||||||||||    
T  47716487 tgtttccaggacttgaacccgtgaccttccagtcacatggcaacaacttt 47716438  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 7879763 - 7879648
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    |||||||||| || ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||||| ||| | | |||||||||| || ||     
T  7879763 ccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcagccttaccttgttttttacacaagagat 7879667  T
Q  119 ttttttcaagacttgaacc 137  Q
    | ||| || ||||||||||    
T  7879666 tgtttccaggacttgaacc 7879648  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 20473770 - 20473734
Alignment:
Q  155 gtgacaacaactttactgttgcgccaaaactcccctt 191  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  20473770 gtgacaacaactttactattgcgccaaacctcccctt 20473734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 13034 - 13181
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacacgagtgac 118  Q
    ||||||||||||| | ||||| |||||||||||||||||||  ||||| |||   | ||||||||||| ||||| ||| |||  ||||||| | || | |    
T  13034 ccggtgcactaaagcccccgcatacgcagggtctgggaaggggtcccaccat---tcggtgtattgtacgcagcctta-ccttgtttttacgcaagaggc 13129  T
Q  119 ttttttcaagacttgaacctatgaactatcagtcacgtgacaacaactttac 170  Q
    | ||| || ||||||||||  ||| || |||||||| |||||||||||||||    
T  13130 tgtttccaggacttgaaccggtgacctttcagtcacatgacaacaactttac 13181  T

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Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 46956 - 46867
Alignment:
Q  19 ccggtgcactaaatctcccgcgtacgcagggtctgggaaggattcccatcatcaataggtgtattgtatgcagctttagcctattttttacac 111  Q
    ||||||||||||| ||||||| ||||||||||| |||||||  ||||| |||   | ||||||||||| ||| | ||| ||||||||||||||    
T  46956 ccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccat---ttggtgtattgtacgcaaccttaccctattttttacac 46867  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 83897 - 83840
Alignment:
Q  125 caagacttgaacctatgaactatcagtcacgtgacaacaactttact-gttgcgccaa 181  Q
    |||||||||||||  ||| || |||||||| |||||||||||||||| ||||||||||    
T  83897 caagacttgaacccgtgacctttcagtcacatgacaacaactttactagttgcgccaa 83840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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