View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5159_low_5 (Length: 234)
Name: NF5159_low_5
Description: NF5159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5159_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 5778822 - 5779005
Alignment:
| Q |
32 |
tcctcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgtta |
131 |
Q |
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| T |
5778822 |
tcctcaacctaaccaaaattctttactcatctcacactttctttaaagcagcctcggagtttcattctctcggcattgacagtgagattgacactcgtta |
5778921 |
T |
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| Q |
132 |
ttcaaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataa |
215 |
Q |
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| T |
5778922 |
ttcaaccacggtatttgttccggatgacaaagcattcgcaaatgctactgtttccaaaagatatgagtcgcttagcgacgataa |
5779005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 5796550 - 5796733
Alignment:
| Q |
32 |
tcctcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgtta |
131 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
5796550 |
tcctcaacctaaccaaaattctttactcctctcacactttctttaaagcaacctcggagtttcattctctcggcattgacagtgatattgacactcgtta |
5796649 |
T |
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| Q |
132 |
ttcaaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataa |
215 |
Q |
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| T |
5796650 |
tccaaccacgatatttgttcctgatgacaaagcattcgcaaatgcttctgtttccaaaagatataactcgcttagcaacgataa |
5796733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 5796958 - 5796778
Alignment:
| Q |
35 |
tcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgttattc |
134 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
5796958 |
tcaacctaaccaaaattctttactcctctcacactttctttaaagcagcctcggagtttcattctctcggcattgacagtgagattgacactcgttatcc |
5796859 |
T |
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| Q |
135 |
aaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataa |
215 |
Q |
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|||||||||||||||| | ||| ||||||||||| | |||||||||||||||||||||| |||||||||||||| |||| |
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| T |
5796858 |
aaccacggtatttgtttctgataacaaagcattcgtagatgctactgtttccaaaagatacaagtcgcttagcgacaataa |
5796778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 5817125 - 5817280
Alignment:
| Q |
59 |
cctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgttattcaaccacggtatttgttccggatga |
158 |
Q |
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||||| ||||||||||| ||||| | |||| |||||| |||| | ||||||| |||||||||||||||| || ||| || ||||| |||| ||||| |
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| T |
5817125 |
cctctgacactttctttgaagcaacttcggtgtttcaatctcacgtcattgaccttgagattgacactcgtgatccaattacaatattt-ttcctgatga |
5817223 |
T |
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| Q |
159 |
caaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataa |
215 |
Q |
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|||||||||| || ||||| |||||| ||||||||| |||||||||| |||||||| |
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| T |
5817224 |
caaagcattcgcagatgcttatgtttctaaaagatataagtcgcttagtgacgataa |
5817280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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