View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160-Insertion-2 (Length: 533)
Name: NF5160-Insertion-2
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 177 - 483
Target Start/End: Complemental strand, 39908083 - 39907779
Alignment:
| Q |
177 |
taattttgccttggaaattaattatgcaagtgaagtgaactactgtttgtaaataggaacttttgatctaatttagtatgattttagacttttgatagag |
276 |
Q |
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| T |
39908083 |
taattttgccttggaaattaattatgcaagtgaagtgaactactgtttgtaaataggaacttttgatgtaattta---tgattttagacttttgatagag |
39907987 |
T |
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| Q |
277 |
gaattggccatatactagtgtcctctgagtggccgacactgatgcataccggataccacgatgcaccgaatcttagaagtgtacgtgcttcatagttatg |
376 |
Q |
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| T |
39907986 |
gaattggtcatatactagtgtcctcttggtggccgacatcgatgcgtaccggataccatgatgcgtcgaatcttagaagtgtatgtgcttcatagttatg |
39907887 |
T |
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| Q |
377 |
aaacaataataaattgctcatgnnnnnnnaaactagagtcaaattgcaatgagtagttggtatactaatttttcatg-nnnnnnnagactatagtcaaat |
475 |
Q |
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| T |
39907886 |
aaacaatgataaattgctcatgtttttttaaactagagtcaaattgcaatgaatagttggtatactaatttttcatgttttttttagactatagtcaaat |
39907787 |
T |
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| Q |
476 |
tgcaatga |
483 |
Q |
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| T |
39907786 |
tgcaatga |
39907779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 39908225 - 39908079
Alignment:
| Q |
8 |
caccactctccaactttctcatcctcctcttcttctacttctcgaactcgtagtcaaagggatgtccgctacaggttcggttcactctctcttttggttg |
107 |
Q |
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| T |
39908225 |
caccactctccaactttctcatcctcctcttcttctacttctcgaactcgtagtcaaagggatgtccgctacaggttcgattcactctctcttttggttg |
39908126 |
T |
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| Q |
108 |
caaaattcgatttctctttatacatgaattaccaatacctgctaatt |
154 |
Q |
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| T |
39908125 |
caaaattcgatttctctttatacatgaattatcaatacctcctaatt |
39908079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 408 - 533
Target Start/End: Complemental strand, 39907799 - 39907670
Alignment:
| Q |
408 |
actagagtcaaattgcaatgagtagttggtatactaatttttcatgnnnnnnn-agactatagtcaaattgcaatgagtaacttgtatgctacatttcaa |
506 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39907799 |
actatagtcaaattgcaatgaatagttggtatactaatttttcatgttttttttagactatagtcaaattgcaatgagtaacttgtatgctacatttcaa |
39907700 |
T |
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| Q |
507 |
ttgctttt---aaacatgagtgatttttga |
533 |
Q |
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| T |
39907699 |
ttgcttttcaacaacatgagtgatttttga |
39907670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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