View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160-Insertion-3 (Length: 209)
Name: NF5160-Insertion-3
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0201 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 2636947 - 2637127
Alignment:
| Q |
29 |
tcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttagttttgttaatcgctcttgtaat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636947 |
tcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttagttttgttaatcgctcttgtaat |
2637046 |
T |
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| Q |
129 |
atagctgctcatgagctcgctctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtctgg |
209 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2637047 |
gtagctgctcatgagctcgctctggctgcaaaaactctaggatcatgtacttgggtggggaatgcccttcttaaagtctgg |
2637127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 16566 - 16365
Alignment:
| Q |
7 |
agttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttag |
106 |
Q |
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||||||||| || || |||| ||||||||||||||||| || || |||||||||||||||||||| || |||||||| ||||| |||| |||||||||| |
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| T |
16566 |
agttaagtgtttcaatgggctgtcaacaatagctagtattagtccctttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttag |
16468 |
T |
|
| Q |
107 |
ttttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtc |
206 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||| |
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| T |
16467 |
ctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcaggctgcaaaatcaataggatcacgtacttgggtggggaatgcccctcttaaagtc |
16368 |
T |
|
| Q |
207 |
tgg |
209 |
Q |
| |
|
||| |
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|
| T |
16367 |
tgg |
16365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 29347022 - 29346821
Alignment:
| Q |
7 |
agttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttag |
106 |
Q |
| |
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||||||||| || || |||| ||||||||||||||||| || || |||||||||||||||||||| || |||||||| ||||| |||| |||||||||| |
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| T |
29347022 |
agttaagtgtttcaatgggctgtcaacaatagctagtattagtccctttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttag |
29346924 |
T |
|
| Q |
107 |
ttttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtc |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||| |
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| T |
29346923 |
ctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcaggctgcaaaatcaataggatcacgtacttgggtggggaatgcccctcttaaagtc |
29346824 |
T |
|
| Q |
207 |
tgg |
209 |
Q |
| |
|
||| |
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|
| T |
29346823 |
tgg |
29346821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 4460959 - 4461158
Alignment:
| Q |
9 |
ttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttagtt |
108 |
Q |
| |
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||||||| ||||| |||| ||||||||||||||||| || ||||||||||||||||||||||| || |||||||| ||||| |||| |||||||||| | |
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| T |
4460959 |
ttaagtgttttaatgggctgtcaacaatagctagtattagtccttttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttagct |
4461057 |
T |
|
| Q |
109 |
ttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtctg |
208 |
Q |
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|| ||||| ||||||||||| ||| |||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4461058 |
ttattaattgctcttgtaatgtaggtgctcatgagcttactcaggctgcaaaatccataggatcatgtacttgggtggggaatgcccgtcttaaagtctg |
4461157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 14443702 - 14443501
Alignment:
| Q |
7 |
agttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttag |
106 |
Q |
| |
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||||||||| || || |||| ||||||||||||||||| || || |||||||||||||||||||| || |||||||| ||||| |||| |||||||||| |
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| T |
14443702 |
agttaagtgtttcaatgggctgtcaacaatagctagtattagtccctttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttag |
14443604 |
T |
|
| Q |
107 |
ttttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagtc |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||| |
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| T |
14443603 |
ctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcaggctgcaaaatcaataggatcacgtacttgggtggggaatgcccctcttaaagtc |
14443504 |
T |
|
| Q |
207 |
tgg |
209 |
Q |
| |
|
||| |
|
|
| T |
14443503 |
tgg |
14443501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 35788893 - 35789089
Alignment:
| Q |
7 |
agttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttag |
106 |
Q |
| |
|
||||||||| ||||| || | ||||||||||||||||| || || |||||||||||||||||||| || |||||||| ||||| |||| |||||||||| |
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| T |
35788893 |
agttaagtgttttaatggactgtcaacaatagctagtattagtccctttattagtgactgtcatgactt-gtttggtagtttagttggtagttctgttag |
35788991 |
T |
|
| Q |
107 |
ttttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaag |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| |||||||||| | ||| |||| ||| |||||||||||||||||||||||||| |
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| T |
35788992 |
ctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcaggctgcaaaatcaatagaatcacgtatttgggtggggaatgcccctcttaaag |
35789089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 19501191 - 19500986
Alignment:
| Q |
7 |
agttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttag |
106 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||| | || |||||||||||||||||||| || |||||||| | ||| |||| |||||||||| |
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| T |
19501191 |
agttaagtgttttaatgggatgtcaacaatagctagtattattccctttattagtgactgtcatgactt-gtttggtagtatagttggtagttctgttag |
19501093 |
T |
|
| Q |
107 |
ttttgttaatcgctcttgtaatata----gctgctcatgagctcgctctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaa |
202 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||| |||| | |||||||| | |||||||| |||||||||||||||||||||||||||| |
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| T |
19501092 |
ctttgttaatcgctcttgtaatgtagttggttgctcatgagcttgctcagactgcaaaatcaataggatcacgtacttgggtggggaatgcccctcttaa |
19500993 |
T |
|
| Q |
203 |
agtctgg |
209 |
Q |
| |
|
||||||| |
|
|
| T |
19500992 |
agtctgg |
19500986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 6468345 - 6468153
Alignment:
| Q |
7 |
agttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttag |
106 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||||| || || ||||| |||||||||| || ||||||| ||||| |||| ||||||| || |
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|
| T |
6468345 |
agttaagtgttttaatgggctgtcaacaatagctagtattagtccctttat-----actgtcatgactta-tttggtagtttagttggtagttctgtcag |
6468252 |
T |
|
| Q |
107 |
ttttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcatgtacttgggtggggaatgcccctcttaaagt |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| |||||||||| | |||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
6468251 |
ctttgttaatcgctcttgtaatgtagctgctcatgagcttgctcaggctgcaaaatccataggatcacgtacttgggtggggaatgccccccttaaagt |
6468153 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 2731509 - 2731642
Alignment:
| Q |
75 |
ttgtttggtaatttagatggttgttctgttagttttgttaatcgctcttgtaatatagctgctcatgagctcgctctggctgcaaaaactttaggatcat |
174 |
Q |
| |
|
|||||||||| |||| |||| ||||||||| |||||||||||||||| |||| |||||||||||||||| |||| ||| ||||| |||||||| |
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|
| T |
2731509 |
ttgtttggtagcttagttggtggttctgttaactttgttaatcgctcttctaatgtagctgctcatgagcttgctcaggc-ccaaaatgcataggatcac |
2731607 |
T |
|
| Q |
175 |
gtacttgggtggggaatgcccctcttaaagtctgg |
209 |
Q |
| |
|
|||||| | || ||||||| ||||||||||||||| |
|
|
| T |
2731608 |
gtacttagatgaggaatgctcctcttaaagtctgg |
2731642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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