View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_high_11 (Length: 352)
Name: NF5160_high_11
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 4315539 - 4315865
Alignment:
| Q |
8 |
tgatatgaatggagattggaccgaaagagataaaatcagagattgattatttgtatctggtgcagtaaggtcgagttgttactttgtgaaagtgtgtgtt |
107 |
Q |
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| T |
4315539 |
tgatatggatggagattggatcgaaagagatgaaatcagagattgattatttgtatctggtgcagtaaggtcaagttgttactttgtgaaagtgtgtgtt |
4315638 |
T |
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| Q |
108 |
gctgttgtcatgtgtgaatatggtctcagtaacgacaaggaaataggcataggatgctgaaatggatccattccccgaaaagtttcacatgaatgaatga |
207 |
Q |
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| T |
4315639 |
gctgttgtcatgtgtgaatatggtctcagtaacgacaaggaaataggcataggatgctgaaatggatccattcaccgaaaagtttcacatgaatgaatga |
4315738 |
T |
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| Q |
208 |
atgaatcaaagaataaaaaagtgtgtgatcttgggacgtgtgaatacagtcgcagtagcagtattttatgcattgaatattgatatcttgattgtttcaa |
307 |
Q |
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| T |
4315739 |
atgaatcaaagaataaaaaagtgtgtgatcttgggacgtgtgaatacagtcgcagtagcagtattttatgcattgaatattgatatcttgattgtttcaa |
4315838 |
T |
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| Q |
308 |
aaacgtatattctgctccgtatgaaga |
334 |
Q |
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| T |
4315839 |
aaacgtatattctgctcagtatgaaga |
4315865 |
T |
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