View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_high_15 (Length: 261)
Name: NF5160_high_15
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_high_15 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 30663284 - 30663036
Alignment:
| Q |
7 |
accaaaaccaatatgacggctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnn-- |
104 |
Q |
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| T |
30663284 |
accaaaaccaatatcacagctaaaacaaactccatagcaaacaaccactaaaaacaaaatccataagcacccatcgccgctactcactaaaaaaaaaaaa |
30663185 |
T |
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| Q |
105 |
caactcttgcaatcaaacattctcttcacctccccatggttaatttttaaatttttcttatcatattctttagattccctaattttctttacctccattt |
204 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30663184 |
caattcttgcaatcaaacattctcttcacctccccatggttaatttttaaatttttcttatcatattctttagattccctaattttctttacctccattt |
30663085 |
T |
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| Q |
205 |
cctattcctttgtctccctctttctttcatcttccaagtcattcatctc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30663084 |
cctattcctttgtctccctctttctttcatcttccaagtcattcatctc |
30663036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 43344672 - 43344742
Alignment:
| Q |
26 |
ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctcc |
96 |
Q |
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| T |
43344672 |
ctaaaacaaactccatcgtgaacaaccaccaaaaacgaaatctataagcacccatcgccgctactcgctcc |
43344742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 1819797 - 1819867
Alignment:
| Q |
26 |
ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctcc |
96 |
Q |
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| T |
1819797 |
ctaaaacaaactccaacgcaaacaaccattggaaacgaaatccataaatacccatcgccgctactcactcc |
1819867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 1819882 - 1819916
Alignment:
| Q |
113 |
gcaatcaaacattctcttcacctccccatggttaa |
147 |
Q |
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| T |
1819882 |
gcaatcaaacatcctcttcacctccccatggttaa |
1819916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 31611619 - 31611499
Alignment:
| Q |
26 |
ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnncaactcttgcaatcaaacatt |
125 |
Q |
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| T |
31611619 |
ctaaaacaaactccatcacgaacaaccaatggaaacgaaatccataagcatccattgccgctactcactccaaaaaaa-cacccctcgcaatcaaacatc |
31611521 |
T |
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| Q |
126 |
ctcttcacctccccatggttaa |
147 |
Q |
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| T |
31611520 |
ctcttcacctccccatggttaa |
31611499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 34092997 - 34092963
Alignment:
| Q |
113 |
gcaatcaaacattctcttcacctccccatggttaa |
147 |
Q |
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| T |
34092997 |
gcaatcaaacatcctcttcacctccccatggttaa |
34092963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 8987756 - 8987856
Alignment:
| Q |
46 |
aacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnncaactcttgcaatcaaacattctcttcacctccccatggtt |
145 |
Q |
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| T |
8987756 |
aacaaccacttgaaacgaaatccataaccactcatcgccgctactcactcc-aaagaaacacctcgcgcaatcaaacatcctcttcatctccccatggtt |
8987854 |
T |
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| Q |
146 |
aa |
147 |
Q |
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|| |
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| T |
8987855 |
aa |
8987856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 8331 - 8297
Alignment:
| Q |
113 |
gcaatcaaacattctcttcacctccccatggttaa |
147 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
8331 |
gcaatcaaacatcctcttcacctccccatggttaa |
8297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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