View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_high_18 (Length: 236)
Name: NF5160_high_18
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 4293174 - 4293367
Alignment:
| Q |
19 |
ctctaatagtggtaaaaattatccttgtttacacnnnnnnncttgcacaacattaattcaatcaataagtaacgtttaaagcgtctacaagaattatgtg |
118 |
Q |
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| T |
4293174 |
ctctaatagtggtaaaaattatcctagtttacactttttttcttgcacaacattaattcaatcaataagtaacgtttaaagcgcctacaagaattatgtg |
4293273 |
T |
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| Q |
119 |
cataggcatgcagaaactctcctaaaatttatgaatttagcgtacgtgagctgtctgagttaggtgaataattccaagagaaacatggatgata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4293274 |
cataggcatgcagaaactctcctaaaatttatgaatttagcgtacgtgagctgtctgagttaggtgaataattccaacagaaacatggatgata |
4293367 |
T |
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