View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_low_10 (Length: 414)
Name: NF5160_low_10
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 52049930 - 52050189
Alignment:
| Q |
13 |
aatatcccaatacctacaatttcattggtaaaccaaaacaccaagaacgtaataataagttgaaattaagttggtgtacgtaccctctatcagattcgtg |
112 |
Q |
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| T |
52049930 |
aatatcccaatacctacaatttcattggtaaaccaaaacaccaagaacgtaataataagttgaaattaagttgttgtacgtaccctctatcagattcgtg |
52050029 |
T |
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| Q |
113 |
gttaataatttcgagcaaattatcgagtccattatattgaattccagtaacacatccttctgggtttgatatattgacttgtactatgtcattatcaatt |
212 |
Q |
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| T |
52050030 |
gttattaatttcgagcaaattatcgagtccattatattgaattccagtaacacatccttctgggtttgatatattgacttgtactatgtcattatcaatt |
52050129 |
T |
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| Q |
213 |
accacctaaacagaacnnnnnnnntatacaacatattttattctaagttcattgccttag |
272 |
Q |
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| T |
52050130 |
accacctaaacagaacaaaaaaaatatacaacatattttattctaagttcattgccttag |
52050189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 52050246 - 52050308
Alignment:
| Q |
334 |
gaagtggattacatagttttcttgaatatccaatcgcacccctggagattacatactataaat |
396 |
Q |
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| T |
52050246 |
gaagtggattacatagttttcttgaatatccaatcgcacccctggagattacatactataaat |
52050308 |
T |
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