View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_low_11 (Length: 410)
Name: NF5160_low_11
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 8934181 - 8933794
Alignment:
| Q |
18 |
cctacaaagatcaaattcatgccacaaactatgatacctttcggcataacattctttttctgaagaccttttctccttgatttcactgccttcattttaa |
117 |
Q |
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| T |
8934181 |
cctacaaagatcaaattcatgccacaaactatgatacctttcggcataacattctttttctgaagaccttttctccttgatttcactgccttcattttaa |
8934082 |
T |
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| Q |
118 |
ttggagttctatttagtaactcatccaatgagttcaaaattctgagtccattatgtgtattggcttttctcatagaaccaagtttcattcgtgctgtttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8934081 |
ttggagttctatttagtaactcatccaatgagttcaaaattctgagtccattatgtgtattggcttttctcatagaaccaagtttcattcgtgctgtttt |
8933982 |
T |
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| Q |
218 |
agactcacatgagatagttggtacattgacatggtagatatgagaatttcttgatactatgttgcttgaagcagtcactgttgccattttttatactgnn |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8933981 |
agactcacatgagatagttggtacattgacatggtagatatgagaatttcttgatactatgttgcttgaagcagtcactgttgccattttttatactg-a |
8933883 |
T |
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| Q |
318 |
nnnnnncaaatattcctctagaattagatttcaagtttcaacctcacacttgtgaaattattgtgtataactataaagtataatctacc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
8933882 |
aaaaaacaaatattcctctagaattagatttcaagtttcaacctcacacttgtgaaattattatgtataactataaagtataaactacc |
8933794 |
T |
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