View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5160_low_13 (Length: 341)
Name: NF5160_low_13
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 35680732 - 35681045
Alignment:
| Q |
18 |
attcaatggtgtcatcagttgatacctttcctagtcagtccaaaagcgtcatgtcgaatgatcaatcttttgatatcagtttcacttcaaatttgagttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35680732 |
attcaatggtgtcatcagttgatacctttcctagtcagtccaaaagcgtcatgtcgaatgatcaatcttttgatatcagtttcacttcaaatttgagttg |
35680831 |
T |
|
| Q |
118 |
tggtgtcatggccaaacctccaaagccgccagtacggaacgatggtcaatcaaaattctctcggtataataccattagctataaaggacgaagtcgatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35680832 |
tggtgtcatggccaaacctccaaagccgccagtacggaacgatggtcaatcaaaattctctcggtataataccattagctataaaggacgaagtcgatca |
35680931 |
T |
|
| Q |
218 |
aacattcatttgcaattgctggtggtgctcgtgacacaagggcaatgctgaatcgcgccggtgaagggttgtcgtgtaccattatatctggttatgtttg |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35680932 |
aacattcatttccaattgctggtggtgctcgtgacacaagggcaatgctgaatcgcgccggtgaagggttgtcgtgtgccattatatctggttatgtttg |
35681031 |
T |
|
| Q |
318 |
ttcttttgatgatg |
331 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35681032 |
ttcttttgatgatg |
35681045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 26376113 - 26376242
Alignment:
| Q |
18 |
attcaatggtgtcatcagttgatacctttcctagtcagtccaaaagcgtcatgtcgaatgatcaatcttttgatatcagtttcacttcaaatttgagttg |
117 |
Q |
| |
|
|||||||| |||| |||| |||||||||| |||||| |||||||||| |||||| |||||||||||||| |||||||| ||||||| |||| |||||||| |
|
|
| T |
26376113 |
attcaatgatgtcttcagatgataccttttctagtccgtccaaaagcctcatgttgaatgatcaatcttctgatatcattttcactccaaacttgagttg |
26376212 |
T |
|
| Q |
118 |
tggtgtcatggccaaacctccaaagccgcc |
147 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |
|
|
| T |
26376213 |
tggtgtaatggccaaacctccaaaaccgcc |
26376242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 34318087 - 34318134
Alignment:
| Q |
18 |
attcaatggtgtcatcagttgatacctttcctagtcagtccaaaagcg |
65 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34318087 |
attcaacggtgtcttcagttgatacctttcctagtcagtccaaaagcg |
34318134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 32535745 - 32535651
Alignment:
| Q |
237 |
tggtggtgctcgtgacacaagggcaatgctgaatcgcgccggtgaagggttgtcgtgtaccattatatctggttatgtttgttcttttgatgatg |
331 |
Q |
| |
|
||||||||||||| ||||||| | |||| ||||||| ||||||||||| |||||| | | || ||| |||| ||| |||||||||||||||| |
|
|
| T |
32535745 |
tggtggtgctcgtcacacaagagtggtgcttaatcgcgttggtgaagggttttcgtgtgcaagtacatccggttctgtctgttcttttgatgatg |
32535651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University