View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_low_14 (Length: 313)
Name: NF5160_low_14
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 50392718 - 50392418
Alignment:
| Q |
1 |
tatatcttatagtcaacaagattgtcgtggatacaagttgtgtttgaaaccaacaaaatttgataaacaaaaaatttaattagtaatttattaactcaac |
100 |
Q |
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| T |
50392718 |
tatatcttttagtcaacaagattgtcatggatacaagttgtgtttgaaaccaacaaaatttgataaataaaaaatttaattagtaatttattaactcaac |
50392619 |
T |
|
| Q |
101 |
tgctgctgatgatcaggaatacctccaacatcacatttacaaaaggttgcnnnnnnngcatgaataaaactaaaagtagtaatatgaaaagagcagtgtg |
200 |
Q |
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| T |
50392618 |
tgctgctgatga---ggaatacctccaacatcacatttacaaaaggttgcataaaa-gcaggaataaaattaaaagtagtaatatgaaaagagcagtgtg |
50392523 |
T |
|
| Q |
201 |
tccataatgagcaatcatatgaactcaacgacatgataaaagcatactgagaatgaaaaagtttgacttccatactgtagaattaaaggggcttaccacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50392522 |
tccataatgagcaatcatatgaactcaacgacatgataaaagcatactgagaattaaaaagtttgacttccatactgtagaattaaaggagcttaccacc |
50392423 |
T |
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| Q |
301 |
atatt |
305 |
Q |
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||||| |
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| T |
50392422 |
atatt |
50392418 |
T |
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