View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5160_low_15 (Length: 267)

Name: NF5160_low_15
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5160_low_15
NF5160_low_15
[»] chr6 (8 HSPs)
chr6 (52-261)||(6458396-6458605)
chr6 (103-242)||(6466372-6466511)
chr6 (94-242)||(6472031-6472179)
chr6 (94-242)||(6506525-6506673)
chr6 (67-242)||(6529238-6529413)
chr6 (151-242)||(6519618-6519709)
chr6 (151-242)||(6497712-6497803)
chr6 (148-242)||(6460866-6460960)
[»] chr7 (3 HSPs)
chr7 (103-251)||(3752828-3752976)
chr7 (151-248)||(4047265-4047362)
chr7 (94-242)||(9664291-9664439)
[»] chr4 (1 HSPs)
chr4 (94-242)||(13535315-13535463)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 52 - 261
Target Start/End: Complemental strand, 6458605 - 6458396
Alignment:
Q  52 aagcaaccgacaaatactccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccac 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6458605 aagcaaccgacaaatactccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccac 6458506  T
Q  152 tcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactcctccctctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6458505 tcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaacttctccctctc 6458406  T
Q  252 cctatgctac 261  Q
    ||| ||||||    
T  6458405 cctctgctac 6458396  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 6466511 - 6466372
Alignment:
Q  103 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 202  Q
    ||||| |||||  |||||||||||||||| ||||| || ||  | || ||||| |||||||||||||||||||| ||||||||  |||||||||||  ||    
T  6466511 ctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaac 6466412  T
Q  203 ctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    |||| |||||||| || || ||||||||||| ||||||||    
T  6466411 ctgaatacattcatccatatctcatcaaatcttcaaactc 6466372  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 6472031 - 6472179
Alignment:
Q  94 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 193  Q
    |||||| ||||||| ||||| || || |||||||| || ||| | || ||  | || ||||| ||||||||||||||||||||  |||| ||| ||||||    
T  6472031 tccactgttctccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatg 6472130  T
Q  194 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    |||||  |||||| |||||||| ||||||||||||||||| ||||||||    
T  6472131 gtgaccaacctgaatacattcatccttacctcatcaaatcatcaaactc 6472179  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 6506673 - 6506525
Alignment:
Q  94 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 193  Q
    |||||| | ||||| ||||| || || ||||||||||| ||||| || ||  | || || || |||||||||||||||||||| ||||||||  | ||||    
T  6506673 tccactgtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatg 6506574  T
Q  194 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    ||||  ||||||| ||| |||| ||||||||||||||||| ||||||||    
T  6506573 gtgatgcacctgaatactttcatccttacctcatcaaatcatcaaactc 6506525  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 242
Target Start/End: Complemental strand, 6529413 - 6529238
Alignment:
Q  67 actccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctt 166  Q
    |||| |||||| ||||| ||||   |||||||| | || || ||||| || || ||||||||||| ||||| || ||  | || ||||| ||||||||||    
T  6529413 actcattttctattcccacaaggtaactccactgtccttcctgacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctt 6529314  T
Q  167 tcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    |||||||||| ||||||||  | |||||||||  |||||| |||||||| || || ||||||||||| ||| ||||    
T  6529313 tcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcagactc 6529238  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 6519618 - 6519709
Alignment:
Q  151 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    ||||| |||||||||||||||||||| ||||||||  |||| ||||||  |||||| || ||||| || |||||||| ||||| ||||||||    
T  6519618 ctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacctcattaaatcatcaaactc 6519709  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 6497803 - 6497712
Alignment:
Q  151 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    ||||| |||||||||||||||||||| ||||||||  | || ||||||  |||||| ||  |||| ||||||||||||||||| ||| ||||    
T  6497803 ctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatcagactc 6497712  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 6460866 - 6460960
Alignment:
Q  148 ccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    |||||||| |||||||| ||||||||||| ||||||||  | |||||||||  ||| || ||| |||| ||||||||||||| ||| || |||||    
T  6460866 ccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcagatcttccaactc 6460960  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 103 - 251
Target Start/End: Original strand, 3752828 - 3752976
Alignment:
Q  103 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 202  Q
    |||||| ||||||||||||||||||| |  || || || ||  | || ||||| |||||||||||||||||||| |||||||| || |||||||||||||    
T  3752828 ctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacac 3752927  T
Q  203 ctgagtacattcacccttacctcatcaaatcctcaaactcctccctctc 251  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  3752928 ctgaatacattcacccttacctcatcaaatcctcaaacttttccctctc 3752976  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 4047362 - 4047265
Alignment:
Q  151 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactcctccct 248  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||   || ||| |||||||||||||||||  |||||||||||||||| |||||    
T  4047362 ctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactcttccct 4047265  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 9664291 - 9664439
Alignment:
Q  94 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 193  Q
    |||||| | ||||| || ||||| || ||||||||||| |||||||| ||  | || ||||| |||||||||||||||||||| ||||||||  ||||||    
T  9664291 tccactctcctccccgaaccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatg 9664390  T
Q  194 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    |||||  |  ||| |||||||||||||| ||| ||||||| || |||||    
T  9664391 gtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactc 9664439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 13535315 - 13535463
Alignment:
Q  94 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 193  Q
    |||||| | ||||| || ||||| || ||||||||||| |||||||| ||  | || ||||| |||||||||||||||||||| ||||||||  ||||||    
T  13535315 tccactctcctccccgaaccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatg 13535414  T
Q  194 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 242  Q
    |||||  |  ||| |||||||||||||| ||| ||||||| || |||||    
T  13535415 gtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactc 13535463  T

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