View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5160_low_18 (Length: 237)
Name: NF5160_low_18
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 50392709 - 50392925
Alignment:
| Q |
1 |
aaaagatatatgtataagagatagaactcatgattaatttatcctattgtttgctgactcatcaaaataaaagaaattgatagcaattttaatttctgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50392709 |
aaaagatatatgtataagagatagaactcatgattaatttatcctattgtttgctgactcatcaaaataaaagaaattgatagcaattttaatttctgtc |
50392808 |
T |
|
| Q |
101 |
tccatctctctctatttaattgaacatacctcatttataacagcagttcacagctgcagagctactgctaaaactaaaactaagtagtaagcagtaagca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50392809 |
tccatctctctctatttaattgaacatacctcatttataacagcagttcacagctgcagagctactgctaaaactaaaactaagt-------agtaagca |
50392901 |
T |
|
| Q |
201 |
ccaacaatatggcggttggtaatt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
50392902 |
ccaacaatatggcggttggtaatt |
50392925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University