View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_low_2 (Length: 580)
Name: NF5160_low_2
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 555
Target Start/End: Original strand, 5468653 - 5469182
Alignment:
| Q |
20 |
acttcttctaccaaatgatataaattaaacacatatagaaccaaatgtaaattaaccatgtttaattttcttttctgcatgtcttgttaaaatgttattt |
119 |
Q |
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| T |
5468653 |
acttcttctaccaaatgatataaattaaacacatatagaaccaaatgtaaattaaccatgtttaattttcttttctgcatgtcttgttaaaatgttattt |
5468752 |
T |
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| Q |
120 |
cttttgataaaactttgctagcattatgcttatatccaaaacagcccaaataaaaactgaaaagtaatcaatgtcaaaccggtagggatggatccaccgt |
219 |
Q |
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| T |
5468753 |
cttttgataaaactttgctagcattatgcttatatccaaaacagcccaaa--------------taatcaatgtcaaaccggtagggatggatccaccgt |
5468838 |
T |
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| Q |
220 |
atgac----tatgactatagccatactagaatattactcaaaaagtgtgtgtacgcccgcgcgcgttctggcatgtaagaatcgactacaaagacaaata |
315 |
Q |
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| T |
5468839 |
atgacttagtatgactatag-cacactagagtattactcaaaaagtgtgtgtacg--cgcgcgcgttctggcatgtgagaatcgactacaaagacaaata |
5468935 |
T |
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| Q |
316 |
agtgaaaaatataagcatttacctctaattaagatataatgtttgatgtataaatgtcgcatcattagtatgtatc--------------ccaactctga |
401 |
Q |
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| T |
5468936 |
agtgaaaaatataagcatttatctc----taagatataatgtttgatgtataaatgtcgcatcattagtatgtatcccaattctgaatatccaactctga |
5469031 |
T |
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| Q |
402 |
tgattttctttgttgaatctccaattctgattttgaattttgatttttctcagaatgctttattagttattgtgcttacaaagtcattgttttgctttat |
501 |
Q |
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| T |
5469032 |
tgattttctttgttgaatctccaattctgattttgaattttgatttttctcagaatgct---ttagttattgtgcttacaaagtcattgttttgctttat |
5469128 |
T |
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| Q |
502 |
agtataaataaatattttcctatgctttcatgagagaaacaatattatttctta |
555 |
Q |
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| T |
5469129 |
agtataaagaaatattttcctatgctttcttgagagaaacaatgttatttctta |
5469182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 517
Target Start/End: Complemental strand, 14319237 - 14319158
Alignment:
| Q |
437 |
aattttgatttttctcagaatgctttattagttattgtgcttacaaagtcattgttttgctttatagtataaataaatatt |
517 |
Q |
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| T |
14319237 |
aattttgattttcctgagaatgctt-attagttattgtgcttacaaagtcattgttctaatttataggatgaagaaatatt |
14319158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 9590476 - 9590394
Alignment:
| Q |
405 |
ttttctttgttgaatctccaattctgattttgaattttgatttttctcagaatgctttattagttattgtgcttacaaagtcat |
488 |
Q |
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| T |
9590476 |
ttttctttgttgaatccccaattctgattctgaatttggattttttttagaat-atgtattagtcattttgctttcaaagtcat |
9590394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 9590578 - 9590532
Alignment:
| Q |
315 |
aagtgaaaaatataagcatttacctctaattaagatataatgtttgatgta |
365 |
Q |
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| T |
9590578 |
aagtgaaaaatataagcatttacctc----taagctataatgtttgatgta |
9590532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 502
Target Start/End: Complemental strand, 38572176 - 38572135
Alignment:
| Q |
461 |
ttattagttattgtgcttacaaagtcattgttttgctttata |
502 |
Q |
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| T |
38572176 |
ttattagttattgtacttacaaagtcactgttttgctttata |
38572135 |
T |
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