View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_low_3 (Length: 474)
Name: NF5160_low_3
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 465
Target Start/End: Original strand, 6156960 - 6157415
Alignment:
| Q |
10 |
aacactgtatcaacataaaacatatgatgtataggtagagttnnnnnnnntacgagactaagataaatgaacataggtgtttaaacactagataaatttg |
109 |
Q |
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|||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6156960 |
aacaatgtatcaacagaaaacatgtgatgtataggtagagttaaaaaaaatacgagactaagataaatgaacataggtgtttaaacactagataaatttg |
6157059 |
T |
|
| Q |
110 |
ttatcataaaacaaagatgaaaaaccttcagctgcat--cataactaaactattaagtggtggcatgagagaaataaataaacaa-gcaaaagattacca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
6157060 |
ttatcataaaacaaagatgaaaaaccttcagctgcatatcataactatactattaagtggtggcatgagagtaataaataaacaaagcaaaagattacca |
6157159 |
T |
|
| Q |
207 |
aaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaacaagataattgg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6157160 |
aaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatacttgtgcaatagccaattaacttaacaagataattgg |
6157259 |
T |
|
| Q |
307 |
aatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaacaagctgcaaatg |
406 |
Q |
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| T |
6157260 |
aatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaaccgtttcactgcaacaagctgcaaatg |
6157359 |
T |
|
| Q |
407 |
caacaaaatatagcaaagtgtgtgacgtttgtaacttaaataatgaccaaaagtataat |
465 |
Q |
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| T |
6157360 |
caacaaaatatagcaaagtgtgtgacgtttgtaattta---aatgaccaaaagtataat |
6157415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 205 - 402
Target Start/End: Original strand, 56020917 - 56021111
Alignment:
| Q |
205 |
caaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaacaagataatt |
304 |
Q |
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| T |
56020917 |
caaaaagatgagcttcaagagatcccttaggcatgtattcataaaccaaaagcatttgatctccattggtgcaataaccaattaacttaacaagatta-- |
56021014 |
T |
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| Q |
305 |
ggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaacaagctgca |
402 |
Q |
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| T |
56021015 |
-gcatgacgcagcacacttagaatatcaagctctgtcataaattcgtgacagccttgacaaccatcaggatttaactgttttactgcaacaagctgca |
56021111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 195 - 404
Target Start/End: Original strand, 54033244 - 54033450
Alignment:
| Q |
195 |
aaaagattaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaa |
294 |
Q |
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| T |
54033244 |
aaaaggttaccaaaaagatgatcttcgagagatcccataggcatgtactcataaaccaaaagcctttgatctccatcagtgcagtagccaattaacttaa |
54033343 |
T |
|
| Q |
295 |
caagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaac |
394 |
Q |
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| T |
54033344 |
ccag---attagaatgatgtagcaagcttaacataagaacctcagtcacaaattcctgaaaaccttgacgaccatcatgacttaattgtttcacagcaac |
54033440 |
T |
|
| Q |
395 |
aagctgcaaa |
404 |
Q |
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|||||||||| |
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| T |
54033441 |
aagctgcaaa |
54033450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 54033134 - 54033190
Alignment:
| Q |
97 |
ctagataaatttgttatcataaaacaaagatgaaaaaccttcagctgcatcataacta |
154 |
Q |
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| T |
54033134 |
ctagataaatttattgtcataaa-caaagatgaaaagccttcagctgtatcataacta |
54033190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 28342031 - 28342080
Alignment:
| Q |
201 |
ttaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaac |
250 |
Q |
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| T |
28342031 |
ttaccaaatagatgataatcaagacttccattaggcatgtattcataaac |
28342080 |
T |
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