View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_low_6 (Length: 437)
Name: NF5160_low_6
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 3 - 421
Target Start/End: Complemental strand, 40902902 - 40902484
Alignment:
| Q |
3 |
cacagagcagaatataaacggtatttaactgagaaaccgatgtaatcttccgtacttaaacgtaaccgagaagccaatgtaatcttccgtatttaaacgt |
102 |
Q |
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| T |
40902902 |
cacagagcagaatataaacggtatttaactgagaaaccgatgtaatcttccgtacttaaacgtaactgagaaaccaatgtaatcttccgtatttaaacgt |
40902803 |
T |
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| Q |
103 |
atgtgtcacgccttcctgcagctgcactgtaggcagggcaatgaccagttcaacagcaggctgattttcttcatggttcagatttggactccaactccat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40902802 |
atgtgtcacgccttcctgcagctgcactgtaggcagggcaatgaccagttcaacagcaggctgattttcttcatggttcagatttcgactccaactccat |
40902703 |
T |
|
| Q |
203 |
ttccagttctgcacaccatcggatgcagacagtttctgtgctactatgaattgcttgtcagaagctaaactgaacgggtatggaaattgatgacagattg |
302 |
Q |
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| T |
40902702 |
ttccagttctgcacaccatcggatgcagacagtttctgtgctactatgaattgcttgtcagaagctaaactgaacgggtatggaaattgatgacagattg |
40902603 |
T |
|
| Q |
303 |
gctgatccacttgccataactccttctagaataacgtgttttcaccgtttccgatctcttttccaacaactttcgcgaaccagtttgtgtcagcatctat |
402 |
Q |
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| T |
40902602 |
gctgatccacttgccataactccttctagaataacgcgttttcaccgtttccgatctcttttccaacaactttcgcgaaccagtttgtgtcagcatctat |
40902503 |
T |
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| Q |
403 |
tgggaaaaacccaagttcc |
421 |
Q |
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| T |
40902502 |
tgggaaaaacccaagttcc |
40902484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 158 - 345
Target Start/End: Complemental strand, 30149676 - 30149497
Alignment:
| Q |
158 |
gcaggctgattttcttcatggttcagatttggactccaactccatttccagttctgcacaccatcggatgcagacagtttctgtgctactatgaattgct |
257 |
Q |
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|||||| |||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||| || |
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| T |
30149676 |
gcaggcagattttgttcatggttcagatttcgactccaacttcatttccagttctgcacaccatcggtctcatacagtttctgtgctactgtgaattcct |
30149577 |
T |
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| Q |
258 |
tgtcagaagctaaactgaacgggtatggaaattgatgacagattggctgatccacttgccataactccttctagaataacgtgttttc |
345 |
Q |
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| T |
30149576 |
tgtcagaagctaaacagaacaggtttggaaattg--------ttggctgattcccttgccataactccttccagaataatgtgttttc |
30149497 |
T |
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