View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5160_low_7 (Length: 428)

Name: NF5160_low_7
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5160_low_7
NF5160_low_7
[»] chr8 (1 HSPs)
chr8 (23-416)||(41966582-41966975)
[»] chr2 (37 HSPs)
chr2 (26-266)||(10335866-10336109)
chr2 (140-416)||(9284184-9284457)
chr2 (140-409)||(8573499-8573786)
chr2 (26-419)||(9328471-9328864)
chr2 (26-273)||(16269104-16269354)
chr2 (134-267)||(9065581-9065714)
chr2 (39-416)||(9291797-9292186)
chr2 (26-410)||(9320863-9321244)
chr2 (123-260)||(10371886-10372023)
chr2 (123-416)||(9315894-9316178)
chr2 (125-410)||(7115621-7115906)
chr2 (48-416)||(10352984-10353361)
chr2 (135-416)||(9061130-9061426)
chr2 (123-267)||(12012523-12012667)
chr2 (39-252)||(9274557-9274770)
chr2 (26-405)||(10347650-10348059)
chr2 (123-252)||(12006095-12006224)
chr2 (123-416)||(11987467-11987754)
chr2 (142-254)||(9364662-9364774)
chr2 (353-416)||(10335731-10335794)
chr2 (195-416)||(12018937-12019155)
chr2 (352-418)||(10371710-10371776)
chr2 (39-112)||(9316210-9316283)
chr2 (355-409)||(9065820-9065874)
chr2 (353-407)||(16268952-16269006)
chr2 (173-253)||(17566110-17566190)
chr2 (28-106)||(9284054-9284132)
chr2 (47-111)||(12006001-12006065)
chr2 (26-113)||(7115501-7115588)
chr2 (356-407)||(9274384-9274435)
chr2 (352-418)||(10341222-10341291)
chr2 (191-253)||(7611974-7612036)
chr2 (356-416)||(12012759-12012816)
chr2 (190-251)||(8579531-8579592)
chr2 (47-111)||(12012429-12012493)
chr2 (352-410)||(8579708-8579766)
chr2 (348-416)||(12006317-12006385)
[»] chr1 (6 HSPs)
chr1 (123-410)||(29453281-29453565)
chr1 (137-406)||(29443312-29443578)
chr1 (142-410)||(29467776-29468041)
chr1 (123-410)||(29423146-29423430)
chr1 (26-103)||(29467651-29467728)
chr1 (50-103)||(29423459-29423512)
[»] chr7 (5 HSPs)
chr7 (142-268)||(45243719-45243845)
chr7 (153-260)||(45230460-45230570)
chr7 (191-268)||(45237970-45238047)
chr7 (352-406)||(45230293-45230347)
chr7 (352-406)||(45243555-45243609)
[»] chr3 (4 HSPs)
chr3 (135-335)||(37462442-37462645)
chr3 (352-410)||(37462349-37462407)
chr3 (191-251)||(39427680-39427740)
chr3 (47-118)||(37462674-37462745)
[»] chr4 (3 HSPs)
chr4 (118-267)||(26574882-26575031)
chr4 (190-237)||(561273-561320)
chr4 (71-113)||(26575048-26575090)
[»] scaffold0667 (2 HSPs)
scaffold0667 (125-327)||(4432-4634)
scaffold0667 (26-114)||(4663-4751)
[»] chr5 (1 HSPs)
chr5 (191-252)||(36224454-36224515)


Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 23 - 416
Target Start/End: Original strand, 41966582 - 41966975
Alignment:
Q  23 aggaacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaataggtcaaaagaa 122  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966582 aggaacttgatggattacacccttgtttaattgtcgcgtttaacctaacacttgagattttcaaccaggttcctcttcctgctgaaataggtcaaaagaa 41966681  T
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41966682 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgtttgggtgatgaaagaatatcgatct 41966781  T
Q  223 agagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaagg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966782 agagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaagg 41966881  T
Q  323 ttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966882 ttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 41966975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 26 - 266
Target Start/End: Complemental strand, 10336109 - 10335866
Alignment:
Q  26 aacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaatag---gtcaaaagaa 122  Q
    |||||||||| ||||| | |||||||||||  ||||||||  || ||||||||||||||||  ||||||||||||||| |||||||    || |  |||     
T  10336109 aacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgagattttcaatgaggttcctcttcctgatgaaataattagtaatgagag 10336010  T
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    |||| |||||||| || ||||||||||||||||||||||| ||  |||| |||||||||||| | |  |||||||||||||||||||||||||| | | |    
T  10336009 ttttaaaatttctattgctgttttgggagggtgtctttgtttgcctgtgaattatcaaactactaaaattgatgtttgggtgatgaaagaatatggctgt 10335910  T
Q  223 agagatagctggtgtaaactttttactttggttaaatcttgttt 266  Q
    |||||||| |||||||||| |||||||||||||||||| |||||    
T  10335909 agagatagttggtgtaaacattttactttggttaaatcgtgttt 10335866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 140 - 416
Target Start/End: Original strand, 9284184 - 9284457
Alignment:
Q  140 ctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaa 239  Q
    ||||||| ||||| |||||| ||||| ||||| |||||||||||| | |  |||| ||||||||||||||||||||| | ||||||||||| ||||||||    
T  9284184 ctgttttaggaggttgtcttagtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaa 9284283  T
Q  240 actttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaaggaatt 339  Q
    | |||||||||||||||||||  | ||||||| |  ||||||||| ||| ||  |||||||| |||||| ||||| || |||||||| ||   || |||     
T  9284284 aatttttactttggttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctagtgatggtagtaaggttctatt---agaaata 9284380  T
Q  340 aatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
     ||  |  ||| ||| |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||    
T  9284381 gattgtaagaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatga 9284457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 140 - 409
Target Start/End: Original strand, 8573499 - 8573786
Alignment:
Q  140 ctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaa 239  Q
    |||||||||| |||||||||||||||  |||| ||||| |||| | |||  |||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  8573499 ctgttttgggtgggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaa 8573598  T
Q  240 actttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaaggaatt 339  Q
    |||||||||||| |||||||| ||||||||| ||  ||| ||||| | | ||  |||||||| |||||| |||||||| |||||||||||| ||||||||    
T  8573599 actttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctagtgatggaagtaaggttctgttggaaggaatt 8573698  T
Q  340 aatgattt------------------gaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaatt 409  Q
     | | |||                  ||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||||||    
T  8573699 gaagttttgtcggaggtatgtcataggaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattcctaatt 8573786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 419
Target Start/End: Complemental strand, 9328864 - 9328471
Alignment:
Q  26 aacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctga----aataggtcaaaaga 121  Q
    |||||| ||||||||| | || ||||||||| ||||||||| |||||||||| ||||||||   |||||||||||||| ||     ||||| | | ||||    
T  9328864 aacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttgataatag-taataaga 9328766  T
Q  122 attttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatc 221  Q
     ||||||||||  ||||  ||||||||||||||||||||| |||  | || ||||| |||||| |||  |||||||||||||||||||| ||||| |||     
T  9328765 gttttgaaattgatgttgatgttttgggagggtgtctttgcatgactttgaattatgaaactactgaaattgatgtttgggtgatgaaacaatatggata 9328666  T
Q  222 tagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaag 321  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||||  || | |||||||||| ||| ||  |||||||| ||  || |||||||  |||    
T  9328665 tagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtgatggaaaaaag 9328566  T
Q  322 gttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgatgt 419  Q
    ||| |||||  |||  |  ||  |  ||| ||||||| ||||||||| | ||||| |||| ||| ||||||||||||||||||| ||||  |||||||    
T  9328565 gttttgttg--agg-gtggattttgagaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcctgatttccatgatgt 9328471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 26 - 273
Target Start/End: Complemental strand, 16269354 - 16269104
Alignment:
Q  26 aacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaata---ggtcaaaagaa 122  Q
    ||||||| || ||||| | || |||||| || ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||   ||| ||| ||     
T  16269354 aacttgacgggttacatccttctttaatcgtcgcgtttaacctaacacttgagattttcaacgaggttcctcttcctgctgaattacaaggtgaaacgag 16269255  T
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    |||   |||   |||| ||||||||||||| |||||||||||   |||| ||||| |||||| | |  |||||||||||||||||||||| ||| ||| |    
T  16269254 tttgttaatcgatgttgctgttttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatat 16269155  T
Q  223 agagatagctggtgtaaactttttactttggttaaatcttgtttcacttca 273  Q
    |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||    
T  16269154 agagatagttggtgcaaactttttaccttggttaaatcgtgtttcacttca 16269104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 134 - 267
Target Start/End: Original strand, 9065581 - 9065714
Alignment:
Q  134 ctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctg 233  Q
    ||||| |||||||||||||||||||||||||| || || ||||| |||||| | || |||||| ||||||||||||||||||| ||||||||||||| ||    
T  9065581 ctgttgctgttttgggagggtgtctttgtatgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggatctagagatagttg 9065680  T
Q  234 gtgtaaactttttactttggttaaatcttgtttc 267  Q
    ||||||||||||||||||||| ||||||||||||    
T  9065681 gtgtaaactttttactttggtcaaatcttgtttc 9065714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 416
Target Start/End: Complemental strand, 9292186 - 9291797
Alignment:
Q  39 acaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaatag---gtcaaaagaattttgaaatttct 135  Q
    ||||| |||||| ||||| || |||||| |||||||||||| ||||||   ||||||| |||||||||||||||   || || ||    ||  |||| ||    
T  9292186 acacccttgtttcattgtcgcttttaacctaacacttgagactttcaatgtggttccttttcctgctgaaatagaaggtgaagagg---ttacaattgct 9292090  T
Q  136 gtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggt 235  Q
    ||| ||||||| |||| |||||||||||||  |||| ||||| |||||| | |  |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  9292089 gttgctgttttaggagagtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttggt 9291990  T
Q  236 gtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaagg 335  Q
    |||||||||||||||||||||||||  | ||||      |||||||||| ||| ||  |||| ||| |||||| |||||||| |||||||||||| | ||    
T  9291989 gtaaactttttactttggttaaatcgcggttca------ctttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgttggacgg 9291896  T
Q  336 aa------------------ttaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
    ||                  | ||| ||  ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9291895 aactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatga 9291797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 26 - 410
Target Start/End: Complemental strand, 9321244 - 9320863
Alignment:
Q  26 aacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctga----aataggtcaaaaga 121  Q
    |||||| ||||||||| | || ||||||||| || |||||| |||||||||| ||||||||   |||||||||||||| ||     ||||| | |  |||    
T  9321244 aacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttcataatag-taatgaga 9321146  T
Q  122 attttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatc 221  Q
     ||||||||||  ||||  ||||||||||||||||||||| |||  |    ||||  ||||||   | ||||||||||||||||||||||||||| | ||    
T  9321145 gttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttc 9321049  T
Q  222 tagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaag 321  Q
    ||||||||| |||||||||||||||||| |||||||||| |||| |  || | |||||||||| ||| ||  |||||||| ||| || |||||||  |||    
T  9321048 tagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgagtgatggaaaaaag 9320949  T
Q  322 gttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattt 410  Q
    ||| |||||  |||  |  ||| |  ||| ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||    
T  9320948 gttttgttg--agg-gtagatgctgagaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcctgattt 9320863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 10372023 - 10371886
Alignment:
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    ||||||||||  |||| ||||||| ||||||||||||||||||  |||||||||| |||||| | | |||||| |||||||||||||||||||| | |||    
T  10372023 ttttgaaattcgtgttgctgttttaggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttct 10371924  T
Q  223 agagatagctggtgtaaactttttactttggttaaatc 260  Q
    |||||||| |||||||||||||||||||||||||||||    
T  10371923 agagatagttggtgtaaactttttactttggttaaatc 10371886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 123 - 416
Target Start/End: Complemental strand, 9316178 - 9315894
Alignment:
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| || || |||||||||||| | |   ||||||||||||||||||||| ||| ||||     
T  9316178 ttttcaaattgctgttgctgttttgggagggtgtctttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatggatc- 9316080  T
Q  223 agagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaagg 322  Q
         ||| |||||||||||||||||||||||||| || |||||||||| ||||||||| |  |||  |  |||||||| |||||| || ||||| ||||    
T  9316079 -----tagttggtgtaaactttttactttggttaattcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaagg 9315985  T
Q  323 ttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
    |||| |||   | |||  ||  |  ||| |||||||||| ||| |||| |||||||||| ||| |||||||||||||||| ||||||| |||||    
T  9315984 ttctattg---gaaatagattgtaagaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatga 9315894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 125 - 410
Target Start/End: Original strand, 7115621 - 7115906
Alignment:
Q  125 ttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctag 224  Q
    ||||| ||||| || |||||||||||||||||||||||||| ||||| |||||  ||||| | |    |||||||||||||||||| ||||| |||||||    
T  7115621 ttgaactttctattgctgttttgggagggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctag 7115720  T
Q  225 agatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttg---aaatccttgggggttttaggttgttctagcgatggaaggaag 321  Q
    ||| |||||||||||||||||||| |||||||| || ||||||  || |||||||   | ||  ||  ||  |||||||| |||||| |||||||| |||    
T  7115721 agacagctggtgtaaactttttacattggttaattcgtgtttcgatttatctttgattacatggttcaggcctttaggttattctagtgatggaagcaag 7115820  T
Q  322 gttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattt 410  Q
    ||||| |||   | |||  ||  |  ||| ||| ||||||||||||||||||| |||||| ||| || |||||||||||||||||||||    
T  7115821 gttctattg---gaaatagattgtaggaagctggtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattcctaattt 7115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 48 - 416
Target Start/End: Complemental strand, 10353361 - 10352984
Alignment:
Q  48 tttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaatag--------gtcaa----aagaattttgaaatttct 135  Q
    ||||||| | ||||||||| |||||||||||| ||||||  ||||||||||||||| ||||||||        || ||    |||| |||| |||||  |    
T  10353361 tttaattctcgcgtttaacctaacacttgagactttcaatgaggttcctcttcctgatgaaatagaggaagaagttaatagtaagagttttaaaattcgt 10353262  T
Q  136 gtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggt 235  Q
    ||| ||| ||| |||||||||||||||||| ||||||||||| ||  || | |  |||||||||||||||||||||||||| ||| |||||| || ||||    
T  10353261 gttgctgctttaggagggtgtctttgtatgattgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggt 10353162  T
Q  236 gtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaagg 335  Q
    |||||||||||||| |||||||||||| ||||  || | ||||| |||| ||| || ||||||||| ||| || ||| |||  |||||| |||||  |||    
T  10353161 gtaaactttttactgtggttaaatcttctttcgatttacctttgcaatctttgaggcttttaggttattcgagtgatagaaaaaaggttttgttg--agg 10353064  T
Q  336 aattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
      |  ||| |  ||| || ||||||||||||||| ||||| ||||| ||| ||||||| ||| ||||| |||||| |||||    
T  10353063 -gtagatgttgagaatctattttggtatgatttggagagtaaacaagttagttatgttcaagaaattcttaatttggatga 10352984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 135 - 416
Target Start/End: Original strand, 9061130 - 9061426
Alignment:
Q  135 tgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctgg 234  Q
    |||| |||||||||| ||||||||||| |||  |||| ||||| || ||| | |  |||||||||||||||||||||| ||| ||||||||||||| |||    
T  9061130 tgttgctgttttgggtgggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggatctagagatagttgg 9061229  T
Q  235 tgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaag 334  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||| | |  ||| ||   ||| ||| |||||| |||||| | |||||||||||| |||    
T  9061230 tgtaaactttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctagtgatggaggtaaggttctgttggaag 9061329  T
Q  335 gaattaatgattt---------------gaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
     || |  | | ||               ||| ||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9061330 caaatcctaacttggataaaactcttaggaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattcctaattttgatga 9061426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 267
Target Start/End: Original strand, 12012523 - 12012667
Alignment:
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||||| || ||||||||| | |  ||||||| | |||||||||||||||| | | |    
T  12012523 ttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgt 12012622  T
Q  223 agagatagctggtgtaaactttttactttggttaaatcttgtttc 267  Q
    | |||||| |||||||||||||||||||||||  |||| ||||||    
T  12012623 aaagatagttggtgtaaactttttactttggtggaatcgtgtttc 12012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 9274770 - 9274557
Alignment:
Q  39 acaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaataggtcaaaagaattttgaaatttctgtt 138  Q
    ||||| |||||||||||| ||||||||| |||||||||| ||||||||   ||||||||||||||  ||| |   |    ||| ||||||||||  ||||    
T  9274770 acacccttgtttaattgttgcgtttaacctaacacttgatattttcaatgtggttcctcttcctgaagaagtcaatagtgagagttttgaaattaatgtt 9274671  T
Q  139 tctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgta 238  Q
      |||||||| ||||||||||||||||  | || |||||| || || |||  |||| ||||||||||||||||||||| | |||| |||||| |||||||    
T  9274670 gttgttttggaagggtgtctttgtatgactttgaattatcgaaatactgaatttgaagtttgggtgatgaaagaatatggttctacagatagttggtgta 9274571  T
Q  239 aactttttactttg 252  Q
    ||||||||||||||    
T  9274570 aactttttactttg 9274557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 405
Target Start/End: Complemental strand, 10348059 - 10347650
Alignment:
Q  26 aacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaataggtcaaaa------ 119  Q
    |||||||||| ||||| | || ||||||||| ||||||||| | |||||||| ||||||||  ||||||||||||||| |||||||||| || |          
T  10348059 aacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaattttcaatgaggttcctcttcctgatgaaataggtgaagaagttaa 10347960  T
Q  120 ------gaattttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaa 213  Q
          || ||||||| ||  |||| |||||||||||||||||||||||||   ||| |||||| ||  || | |  ||||||||||||| |||||||||    
T  10347959 tggtgagagttttgaagttcatgttgctgttttgggagggtgtctttgtatcactgtcgattataaagatactaaaattgatgtttgggtcatgaaagaa 10347860  T
Q  214 tatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatg 313  Q
    ||| ||| ||||||||| |||||||||||||||||| ||| | | || ||||||  || | |||||||||  ||| ||    || ||| |||||| ||||    
T  10347859 tatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatg 10347760  T
Q  314 gaaggaaggttctgttgcaaggaattaatgatttg------------------aaactgttttggtatgatttgaagagtgaacaaattacttatgttga 395  Q
    |||| |||||||||||| || ||  | ||| ||||                  || |||||||||||||||||||||||||||||||||| |||||||||    
T  10347759 gaagtaaggttctgttggaaagagctcatgttttgttggaggtacaacataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttga 10347660  T
Q  396 aggaattcct 405  Q
    ||||||||||    
T  10347659 aggaattcct 10347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 12006095 - 12006224
Alignment:
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    ||||||||||  |||| ||| ||||||||||||||||||| || ||||| |||||||||||| | |  ||||||| |||||||||||||||||| | | |    
T  12006095 ttttgaaattaatgttgctgatttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggttgt 12006194  T
Q  223 agagatagctggtgtaaactttttactttg 252  Q
    | |||||| |||||||||||||||||||||    
T  12006195 aaagatagttggtgtaaactttttactttg 12006224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 416
Target Start/End: Original strand, 11987467 - 11987754
Alignment:
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    ||||||||||  |||| ||||||||||||||||||||||| ||  |||| || |||| ||||   |  ||||| |||||||||||||||||||| ||| |    
T  11987467 ttttgaaattgatgttgctgttttgggagggtgtctttgtttgactgtgaatcatcatacta---agattgatatttgggtgatgaaagaatatggatgt 11987563  T
Q  223 agagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaagg 322  Q
    |||||||| |||||||||||||| || ||| |  |||| ||||||  || | |||||||||| ||| |   ||| |||| ||| || ||||| |  ||||    
T  11987564 agagatagttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgagtgatggtaaaaagg 11987663  T
Q  323 ttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
    || ||||| |     ||||| |   ||| ||| |||||||||||||||||||||||||| ||| ||||||||| ||||||||||| || |||||    
T  11987664 ttttgttggatc---ttaatcacaagaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatga 11987754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 9364774 - 9364662
Alignment:
Q  142 gttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaac 241  Q
    |||||||||||||||||| ||||| ||||| |||||||||||| | |  |||||||||||||||||||||||||| |||  | |||||| |||||||||     
T  9364774 gttttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaat 9364675  T
Q  242 tttttactttggt 254  Q
    | |||||||||||    
T  9364674 tgtttactttggt 9364662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 10335794 - 10335731
Alignment:
Q  353 tgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  10335794 tgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatga 10335731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 195 - 416
Target Start/End: Original strand, 12018937 - 12019155
Alignment:
Q  195 tgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggtt 294  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |  |||| ||||||  || | |||| | ||  ||| |   |    
T  12018937 tgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccct 12019036  T
Q  295 ttaggttgttctagcgatggaaggaaggttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttg 394  Q
    ||||||| ||| || |||||||  |||||| ||||| | | || | || || ||   ||| |||||||||||||||||||| | ||| ||| ||||||||    
T  12019037 ttaggttattcgagtgatggaaaaaaggttttgttggatgtaaatcataatatg---ctggtttggtatgatttgaagagtcagcaagttagttatgttg 12019133  T
Q  395 aaggaattcctaattttgatga 416  Q
    |||||||||||||||| |||||    
T  12019134 aaggaattcctaatttcgatga 12019155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 10371776 - 10371710
Alignment:
Q  352 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgatg 418  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||| |||||||    
T  10371776 ctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatg 10371710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 9316283 - 9316210
Alignment:
Q  39 acaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaatag 112  Q
    ||||| |||||| ||||| ||||||||| |||||||||||||||||||   |||||||||||||||||||||||    
T  9316283 acacccttgtttcattgtcgcgtttaacctaacacttgagattttcaatgtggttcctcttcctgctgaaatag 9316210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 9065820 - 9065874
Alignment:
Q  355 ttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaatt 409  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  9065820 ttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttcctaatt 9065874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 16269006 - 16268952
Alignment:
Q  353 tgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaa 407  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  16269006 tgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattcctaa 16268952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 17566110 - 17566190
Alignment:
Q  173 attatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttactttgg 253  Q
    |||||||||||| | ||||||||||||||||||| ||||||||| ||| ||||||||  ||||||||| | ||||| ||||    
T  17566110 attatcaaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttaccttgg 17566190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 9284054 - 9284132
Alignment:
Q  28 cttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctg 106  Q
    |||||||| | | ||| |||||||||||| ||||||||| ||||||| ||| |||||||  ||||||||||||||||||    
T  9284054 cttgatgggtcagacctttgtttaattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctgctg 9284132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 12006001 - 12006065
Alignment:
Q  47 gtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaata 111  Q
    |||||||| | ||||||||| ||||||||||| |||||||| |||||||| |||||| |||||||    
T  12006001 gtttaattttcgcgtttaacctaacacttgaggttttcaacgaggttccttttcctgatgaaata 12006065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 7115501 - 7115588
Alignment:
Q  26 aacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaatagg 113  Q
    |||||||||  | ||||| |||||||||||| ||||||||| |||||||||||  |||||   ||||||||||||||| |||| ||||    
T  7115501 aacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctcttcctgatgaattagg 7115588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 9274435 - 9274384
Alignment:
Q  356 tttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaa 407  Q
    |||||||||||||||||||||||||| ||| || |||| |||||||||||||    
T  9274435 tttggtatgatttgaagagtgaacaagttagttttgttaaaggaattcctaa 9274384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 10341291 - 10341222
Alignment:
Q  352 ctgttttggtatgatttgaagagtgaacaaatta---cttatgttgaaggaattcctaattttgatgatg 418  Q
    |||||||||||||||||| ||||||||||| |||    ||||||||||||||||||| |||| |||||||    
T  10341291 ctgttttggtatgatttggagagtgaacaagttagttattatgttgaaggaattcctgatttggatgatg 10341222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 7612036 - 7611974
Alignment:
Q  191 ttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttactttgg 253  Q
    |||||||||||||||||||||||||| |||  | |||||| ||||||||| | ||||||||||    
T  7612036 ttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttgg 7611974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 12012759 - 12012816
Alignment:
Q  356 tttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
    ||||||||||||||||||||   ||| ||| |||||||||||||||||||||||| |||||    
T  12012759 tttggtatgatttgaagagt---caagttagttatgttgaaggaattcctaatttcgatga 12012816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 8579531 - 8579592
Alignment:
Q  190 gttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttacttt 251  Q
    ||||| ||||||||||||||| ||||| ||| ||||||||| ||||||||| | ||||||||    
T  8579531 gttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttt 8579592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 12012429 - 12012493
Alignment:
Q  47 gtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaata 111  Q
    |||||||||| ||||||||| ||||||||||| |||||||  |||||||  |||||| |||||||    
T  12012429 gtttaattgtcgcgtttaacctaacacttgagcttttcaatgaggttccatttcctgatgaaata 12012493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 8579708 - 8579766
Alignment:
Q  352 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattt 410  Q
    ||||||||||||||| | || |||||| || |||||| |||| ||||||||||||||||    
T  8579708 ctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaattt 8579766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 12006317 - 12006385
Alignment:
Q  348 gaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatga 416  Q
    ||| ||| ||||||||||||||||||||||| || ||| |||  |||| |||||||| ||||| |||||    
T  12006317 gaagctggtttggtatgatttgaagagtgaagaagttaattacattgagggaattccaaatttcgatga 12006385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 123 - 410
Target Start/End: Original strand, 29453281 - 29453565
Alignment:
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    ||||||||||  |||| | ||||||| |||||||||||||||| ||||| |||||||||||  | |  |||||||||||||||||||||||||| ||| |    
T  29453281 ttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgt 29453380  T
Q  223 agagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaagg 322  Q
    ||||||||||||||| |||||||||||||||   |||| ||||||| || | |||||||| | ||| ||  ||||| || ||| ||||||||||| | ||    
T  29453381 agagatagctggtgtgaactttttactttggcggaatcatgtttcattttacctttgaaaactttgtggcctttagcttattcgagcgatggaagtatgg 29453480  T
Q  323 ttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattt 410  Q
    |||||||| ||| |  |  |||   ||| ||||||||||||||| | |||||||||||| ||| || |||||||||||||||||||||    
T  29453481 ttctgttggaagtagattgtga---gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaattt 29453565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 406
Target Start/End: Original strand, 29443312 - 29443578
Alignment:
Q  137 tttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtg 236  Q
    |||| ||| ||| |||||||||||||||| ||||| |||||||||||  | |  |||||||||||||||||||||||||| ||| |||||||||||||||    
T  29443312 tttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtg 29443411  T
Q  237 taaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaagga 336  Q
    ||||||||||||||||| | |||| ||||||| || | |||||| | | ||| || ||||||||| ||| |||||| |||| | |||||||||||||| |    
T  29443412 taaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagta 29443511  T
Q  337 attaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattccta 406  Q
      |  |||   ||| ||||||||||||||| | |||||||||    ||| ||||||||||||||||||||    
T  29443512 gatcgtga---gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 29443578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 142 - 410
Target Start/End: Original strand, 29467776 - 29468041
Alignment:
Q  142 gttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaac 241  Q
    |||||||||||||||||||   || ||||| |||||||||||||| |  ||||||||||| |||||||||||||| ||| ||||||||| ||| ||||||    
T  29467776 gttttgggagggtgtctttagttgattgtgaattatcaaactagtaaaattgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaac 29467875  T
Q  242 tttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaaggaattaa 341  Q
    ||||||||||||||| ||| |||||||||| |   ||| |||| ||| ||  |||||||| ||| ||||||||||| | |||||||||  ||| |    |    
T  29467876 tttttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgagcgatggaagtatggttctgtttgaagtagacca 29467975  T
Q  342 tgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattt 410  Q
    |||   |||  |||||||||||||| | |||||||||||  ||| ||||||||||||||||||||||||    
T  29467976 tga---gaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaattt 29468041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 123 - 410
Target Start/End: Complemental strand, 29423430 - 29423146
Alignment:
Q  123 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatct 222  Q
    ||||||||||  |||| | ||| ||| |||||| |||||||||  |||| |||||||||||  | |  ||||||||||| |||||||||||||| ||| |    
T  29423430 ttttgaaattggtgttgcggttctggaagggtgcctttgtatgactgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgt 29423331  T
Q  223 agagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaagg 322  Q
    |||||||||||||||||||||||||||||||   |||| |||||||| | | |||||||| | ||| || |||||| || ||| ||||||||| | | ||    
T  29423330 agagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaggtatgg 29423231  T
Q  323 ttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattt 410  Q
    |||||||||||| |  |  |||   ||| ||||||||||||||| | |||||||||||| ||| || |||| ||||||||||||||||    
T  29423230 ttctgttgcaagtagatcctga---gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaattt 29423146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 29467651 - 29467728
Alignment:
Q  26 aacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctg 103  Q
    |||||||||| |||||   |||||||||| | ||||||||| |||  ||||||||||||||  |||||||||||||||    
T  29467651 aacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgagattttcaatgaggttcctcttcctg 29467728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 29423512 - 29423459
Alignment:
Q  50 taattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctg 103  Q
    ||||||| ||||||||| |||||| ||||||||||||  |||||||| ||||||    
T  29423512 taattgttgcgtttaacctaacacatgagattttcaatgaggttccttttcctg 29423459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 142 - 268
Target Start/End: Complemental strand, 45243845 - 45243719
Alignment:
Q  142 gttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaac 241  Q
    |||||||||| ||||||||||||| ||||| |||||||||||| |||  |||||||||||||||||||||||||| | ||||||||||  ||||||||||    
T  45243845 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaac 45243746  T
Q  242 tttttactttggttaaatcttgtttca 268  Q
    ||||||||||||||||||| |||||||    
T  45243745 tttttactttggttaaatcgtgtttca 45243719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 45230570 - 45230460
Alignment:
Q  153 gtgtctttgtatggttgtggattatcaaactagtga---tgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttact 249  Q
    ||||||||||||| ||||| |||||||||||| | |   || ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  45230570 gtgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 45230471  T
Q  250 ttggttaaatc 260  Q
    |||||||||||    
T  45230470 ttggttaaatc 45230460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 45238047 - 45237970
Alignment:
Q  191 ttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttca 268  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||| |||||||    
T  45238047 ttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttca 45237970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 45230347 - 45230293
Alignment:
Q  352 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattccta 406  Q
    ||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||    
T  45230347 ctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattccta 45230293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 45243609 - 45243555
Alignment:
Q  352 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattccta 406  Q
    ||||||||||||||| | || ||||||||| ||||||||||| ||||||||||||    
T  45243609 ctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattccta 45243555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 335
Target Start/End: Complemental strand, 37462645 - 37462442
Alignment:
Q  135 tgtttctgttttgggagggtgtctttgtatggttgtggattatcaaa---ctagtgatgttgatgtttgggtgatgaaagaatatcgatctagagatagc 231  Q
    |||| ||||||||||||| ||||||||||||  |||| ||||| |||   ||| | |  |||||||||||||||||||||||||| |||||||||||||     
T  37462645 tgttgctgttttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagt 37462546  T
Q  232 tggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgc 331  Q
    ||||||||||||| |||| ||| |||||| |||||||||||| |||||||||| ||| ||  |||| ||| |||||| |||||||| |||||| |||||     
T  37462545 tggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttgg 37462446  T
Q  332 aagg 335  Q
    ||||    
T  37462445 aagg 37462442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 37462407 - 37462349
Alignment:
Q  352 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattt 410  Q
    |||||||||||||||| ||||||||||||| ||| |||| |||||||| ||||||||||    
T  37462407 ctgttttggtatgattggaagagtgaacaagttagttatattgaaggagttcctaattt 37462349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 39427740 - 39427680
Alignment:
Q  191 ttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttacttt 251  Q
    |||||||||||||||||||||||||| ||| |||| |||| ||||||||| | ||||||||    
T  39427740 ttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttt 39427680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 37462745 - 37462674
Alignment:
Q  47 gtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaataggtcaaa 118  Q
    |||||||| | || |||||| ||||| |||||||||| ||| ||||||||||||| | ||||||| ||||||    
T  37462745 gtttaattttcgcatttaacctaacatttgagatttttaacgaggttcctcttccggttgaaataagtcaaa 37462674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 26575031 - 26574882
Alignment:
Q  118 aagaattttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatc 217  Q
    |||| |||| |||||  |||| ||| ||| ||||||||||||||||||  |||||||||| ||  || | |  ||||||||||||||||||||||||||     
T  26575031 aagagttttaaaattcgtgttgctgatttaggagggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatg 26574932  T
Q  218 gatctagagatagctggtgtaaactttttactttggttaaatcttgtttc 267  Q
    ||| ||||||||| |||||||||||||||||| |||||||||| ||||||    
T  26574931 gatgtagagatagttggtgtaaactttttactgtggttaaatcgtgtttc 26574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 561320 - 561273
Alignment:
Q  190 gttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgt 237  Q
    |||||||||||||| |||||||||||| ||| ||||||||| ||||||    
T  561320 gttgatgtttgggtaatgaaagaatatggatttagagatagttggtgt 561273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 26575090 - 26575048
Alignment:
Q  71 cacttgagattttcaaccaggttcctcttcctgctgaaatagg 113  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||    
T  26575090 cacttgagactttcaacgaggttcctcttcctgatgaaatagg 26575048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 125 - 327
Target Start/End: Complemental strand, 4634 - 4432
Alignment:
Q  125 ttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagtgatgttgatgtttgggtgatgaaagaatatcgatctag 224  Q
    ||||||||  |||| ||| ||||||||| ||||||||||||  |||| ||||| |||||| | |  |||||||||||||||||||| ||||| |||  |     
T  4634 ttgaaattgatgttgctgctttgggaggatgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaa 4535  T
Q  225 agatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggtt 324  Q
    |||||| |||||||||||||||||| || | ||||| ||| ||||||||  ||||||||| | | |   |||| ||| |||||| |||||||| ||||||    
T  4534 agatagttggtgtaaactttttactatgatgaaatcgtgtgtcacttcacatttgaaatcttcgagtcctttatgttattctagtgatggaagtaaggtt 4435  T
Q  325 ctg 327  Q
    |||    
T  4434 ctg 4432  T

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Target: scaffold0667; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 4751 - 4663
Alignment:
Q  26 aacttgatggattacaccgttgtttaattgtggcgtttaacttaacacttgagattttcaaccaggttcctcttcctgctgaaataggt 114  Q
    |||||||||| ||||| | || | ||||||| || |||||| |||||||||| ||||||||  |||||||||||||||  |||||||||    
T  4751 aacttgatgggttacatccttctctaattgtcgcttttaacctaacacttgaaattttcaatgaggttcctcttcctgacgaaataggt 4663  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 36224515 - 36224454
Alignment:
Q  191 ttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttactttg 252  Q
    |||||||||||||||||||||||||| ||| ||||||||| ||||||||| | |||||||||    
T  36224515 ttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttactttg 36224454  T

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