View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5160_low_8 (Length: 425)
Name: NF5160_low_8
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_8 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 339814 - 339418
Alignment:
| Q |
19 |
tgaatagccagataagttgggcctccgccacgaccaacactccctccacggccatggaataaagtaaccttaataccgtactctttgcaagcagccacta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
339814 |
tgaatagccagataagttgggcctccgccacgaccaacactccctccacggccatggaataaagtaaccttaataccgtactctttgcaagcagccacta |
339715 |
T |
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| Q |
119 |
catcctcttgagctttgtaaagttcccaagcagcggtaaagcgcccagcatctttaccagaatcagaatacccaaccattacctgcatataggcatatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
339714 |
catcctcttgagctttgtaaagttcccaagcagcggtaaagcgcccagcatctttaccagaatcagaatacccaaccattacctgcatataggcatatat |
339615 |
T |
|
| Q |
219 |
aacattaacacacgcattctcggtaataccataacataaatgaaactgccattattataaacaacctcttgctgtccattatggtttttaatgatatgtt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
339614 |
aacattaacacacgcattctcggtaataccataacataaatgaaactgccattattataaataacctcttgctgtccattatggtttttaatgatatgtt |
339515 |
T |
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| Q |
319 |
ggcggtaccaatctattgatagaagttttctgataacgaaaccagctcctctgaggtccttaacagtttcaaagagaggaaccacccgaagcctatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
339514 |
ggcggtaccaatctattgatagaagttttctgataacggaaccagctcctctgaggtccttaacagtttcaaagagaggaaccacccgaagcctatg |
339418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 42189267 - 42189453
Alignment:
| Q |
19 |
tgaatagccagataagttgggcctccgccacgaccaacactccctccacggccatggaataaagtaaccttaataccgtactctttgcaagcagccacta |
118 |
Q |
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|||||||||||||| || ||||| ||||| ||||||| ||| ||||| ||||||||||| | ||||| |||||||| || || ||||||||||| || | |
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| T |
42189267 |
tgaatagccagatatgtagggccaccgcctcgaccaatactgcctccgcggccatggaacagtgtaactttaataccataatcattgcaagcagctacaa |
42189366 |
T |
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| Q |
119 |
catcctcttgagctttgtaaagttcccaagcagcggtaaagcgcccagcatctttaccagaatcagaatacccaaccattacctgca |
205 |
Q |
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||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
42189367 |
catcctcctgagctttgtaaagttcccaagcagcagtgaagcggccagcatctttaccagaatcagaatatccaaccataacctgca |
42189453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 388
Target Start/End: Original strand, 42189538 - 42189645
Alignment:
| Q |
282 |
acctcttgctgtccattatggtttttaatgatatgttggcggtaccaatctattgatagaa-gttttctgataacgaaaccagctcctctgaggtcctta |
380 |
Q |
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|||||||| |||||||| ||||| ||||||| || | ||||||||| |||||||||| || |||| | |||||| ||||||||||||| |||||||| |
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| T |
42189538 |
acctcttgatgtccattgtggttcttaatgacgtgctcgcggtaccagtctattgataaaaagtttccggataactgaaccagctcctctcaggtccttc |
42189637 |
T |
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| Q |
381 |
acagtttc |
388 |
Q |
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|| ||||| |
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| T |
42189638 |
acggtttc |
42189645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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